Wall clock time and date at job start Tue Mar 31 2020 22:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46993 * 2 1 4 4 C 1.53002 * 109.47074 * 119.99657 * 2 1 3 5 5 N 1.46499 * 109.47222 * 64.99875 * 4 2 1 6 6 C 1.46498 * 120.00032 * 263.87183 * 5 4 2 7 7 C 1.50699 * 109.47104 * 261.88805 * 6 5 4 8 8 H 1.08001 * 119.99945 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00336 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00357 * 179.97438 * 9 7 6 11 11 Si 1.86804 * 119.99720 * 359.97438 * 9 7 6 12 12 H 1.48502 * 109.46669 * 90.00284 * 11 9 7 13 13 H 1.48495 * 109.47023 * 210.00138 * 11 9 7 14 14 H 1.48499 * 109.47277 * 330.00118 * 11 9 7 15 15 C 1.34775 * 119.99880 * 83.86592 * 5 4 2 16 16 O 1.21507 * 119.99994 * 1.93130 * 15 5 4 17 17 C 1.48250 * 120.00287 * 181.92758 * 15 5 4 18 18 N 1.32771 * 119.58526 * 355.29232 * 17 15 5 19 19 C 1.31355 * 121.81783 * 179.97438 * 18 17 15 20 20 C 1.39795 * 120.76120 * 0.02562 * 19 18 17 21 21 C 1.48005 * 120.45656 * 179.97438 * 20 19 18 22 22 N 1.34776 * 119.99945 * 359.97438 * 21 20 19 23 23 O 1.21528 * 120.00180 * 179.97438 * 21 20 19 24 24 C 1.39773 * 119.09278 * 0.25128 * 20 19 18 25 25 C 1.38679 * 118.34035 * 359.46386 * 24 20 19 26 26 Cl 1.73601 * 120.41822 * 180.25919 * 25 24 20 27 27 H 1.09000 * 109.47169 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47346 * 300.00234 * 1 2 3 29 29 H 1.09007 * 109.46982 * 60.00355 * 1 2 3 30 30 H 1.08994 * 109.47263 * 239.99817 * 2 1 3 31 31 H 1.08995 * 109.47275 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47013 * 299.99525 * 3 2 1 33 33 H 1.08994 * 109.47265 * 59.99819 * 3 2 1 34 34 H 1.09003 * 109.47169 * 305.00144 * 4 2 1 35 35 H 1.08991 * 109.47393 * 185.00279 * 4 2 1 36 36 H 1.08990 * 109.47427 * 21.89115 * 6 5 4 37 37 H 1.09003 * 109.46890 * 141.89510 * 6 5 4 38 38 H 0.96997 * 120.00292 * 179.97438 * 10 9 7 39 39 H 1.08005 * 119.61945 * 180.02562 * 19 18 17 40 40 H 0.97002 * 119.99849 * 0.02562 * 22 21 20 41 41 H 0.97004 * 120.00468 * 179.72525 * 22 21 20 42 42 H 1.07997 * 120.82927 * 179.70758 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6524 -2.1328 1.1908 6 6 0.4413 -2.5889 1.8773 7 6 0.8141 -3.1874 3.2091 8 1 1.8496 -3.2246 3.5136 9 6 -0.1667 -3.6883 4.0386 10 7 0.1586 -4.2111 5.2008 11 14 -1.9578 -3.6246 3.5117 12 1 -2.2998 -4.8646 2.7697 13 1 -2.8234 -3.5118 4.7130 14 1 -2.1739 -2.4467 2.6336 15 6 2.4100 -3.0117 0.5052 16 8 3.4331 -2.6402 -0.0349 17 6 1.9952 -4.4318 0.4101 18 7 0.9277 -4.8492 1.0802 19 6 0.5209 -6.0970 1.0272 20 6 1.2057 -7.0401 0.2551 21 6 0.7418 -8.4445 0.2007 22 7 -0.3474 -8.8219 0.8989 23 8 1.3431 -9.2573 -0.4735 24 6 2.3379 -6.6398 -0.4601 25 6 2.7306 -5.3120 -0.3821 26 17 4.1247 -4.7550 -1.2537 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 1.8933 -0.5138 -0.8899 31 1 3.1299 1.4426 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6053 -0.2616 2.1370 35 1 3.1262 -0.6443 1.2953 36 1 -0.2282 -1.7432 2.0336 37 1 -0.0599 -3.3414 1.2684 38 1 -0.5314 -4.5632 5.7845 39 1 -0.3526 -6.3980 1.5865 40 1 -0.8276 -8.1730 1.4367 41 1 -0.6539 -9.7414 0.8601 42 1 2.8909 -7.3460 -1.0616 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645627194.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:39 Heat of formation + Delta-G solvation = -20.218071 kcal Electronic energy + Delta-G solvation = -28111.378393 eV Core-core repulsion = 24118.467956 eV Total energy + Delta-G solvation = -3992.910437 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.78322 -39.48355 -38.35908 -36.49567 -36.06717 -34.23205 -33.95627 -32.39927 -32.19352 -30.98085 -28.21148 -26.92479 -26.54756 -24.61521 -23.57159 -22.58297 -21.17652 -20.34739 -19.24461 -18.23801 -17.46907 -17.03112 -16.63040 -16.27169 -15.42563 -15.31876 -15.17106 -14.89954 -14.74324 -14.29770 -14.02439 -13.86803 -13.50869 -13.41704 -12.95932 -12.82111 -12.60753 -12.29186 -12.09938 -11.87444 -11.73788 -11.47592 -11.13537 -11.12045 -10.97400 -10.73542 -10.58970 -10.44649 -10.33478 -10.18875 -9.89047 -9.74123 -9.63413 -9.35540 -8.89476 -8.74584 -8.49001 -7.73082 -6.14685 -4.08223 0.32167 1.12420 2.19375 2.56308 3.11752 3.24772 3.26457 3.30247 3.32067 3.54400 4.03141 4.30183 4.33391 4.69388 4.75167 4.78430 5.08053 5.11243 5.19466 5.19725 5.21457 5.34948 5.70899 5.79584 5.83500 5.89987 5.91835 6.05049 6.15616 6.20727 6.28392 6.32180 6.44394 6.59329 6.60062 6.61702 7.02242 7.11958 7.36155 7.55986 7.84636 8.05092 8.06545 8.43195 8.74988 8.90436 9.45909 10.98514 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.008810 B = 0.005954 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3177.501206 B = 4701.878578 C = 7074.306421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.112 4.112 3 C -0.141 4.141 4 C 0.124 3.876 5 N -0.565 5.565 6 C 0.197 3.803 7 C -0.497 4.497 8 H 0.070 0.930 9 C 0.075 3.925 10 N -0.898 5.898 11 Si 0.870 3.130 12 H -0.276 1.276 13 H -0.289 1.289 14 H -0.265 1.265 15 C 0.560 3.440 16 O -0.537 6.537 17 C 0.123 3.877 18 N -0.377 5.377 19 C 0.128 3.872 20 C -0.172 4.172 21 C 0.575 3.425 22 N -0.846 5.846 23 O -0.540 6.540 24 C -0.027 4.027 25 C -0.053 4.053 26 Cl -0.019 7.019 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.047 0.953 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.027 0.973 37 H 0.068 0.932 38 H 0.263 0.737 39 H 0.164 0.836 40 H 0.405 0.595 41 H 0.407 0.593 42 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.312 -0.694 -9.835 10.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.131 4.131 3 C -0.199 4.199 4 C 0.001 3.999 5 N -0.293 5.293 6 C 0.076 3.924 7 C -0.536 4.536 8 H 0.089 0.911 9 C -0.126 4.126 10 N -0.538 5.538 11 Si 0.697 3.303 12 H -0.202 1.202 13 H -0.215 1.215 14 H -0.190 1.190 15 C 0.346 3.654 16 O -0.415 6.415 17 C -0.016 4.016 18 N -0.088 5.088 19 C -0.033 4.033 20 C -0.178 4.178 21 C 0.360 3.640 22 N -0.411 5.411 23 O -0.417 6.417 24 C -0.054 4.054 25 C -0.084 4.084 26 Cl 0.010 6.990 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.045 0.955 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.181 0.819 40 H 0.235 0.765 41 H 0.238 0.762 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -1.685 -0.260 -9.980 10.124 hybrid contribution -0.974 -0.836 -0.064 1.285 sum -2.659 -1.097 -10.044 10.447 Atomic orbital electron populations 1.21878 0.95276 1.02153 1.01045 1.21496 0.96102 0.96085 0.99456 1.21738 1.00998 0.95702 1.01457 1.21485 1.00542 0.80463 0.97402 1.47867 1.26299 1.07041 1.48092 1.20505 0.82366 0.95602 0.93911 1.21213 0.95708 1.37757 0.98951 0.91140 1.24743 0.98285 0.94942 0.94668 1.69910 1.33344 1.40570 1.09944 0.86973 0.85885 0.79143 0.78251 1.20174 1.21529 1.19015 1.17667 0.83814 0.83849 0.80103 1.90797 1.24280 1.78468 1.47958 1.21482 0.91763 0.95717 0.92603 1.68885 1.10770 1.15311 1.13784 1.23293 0.98168 0.88445 0.93353 1.21034 0.98917 0.95106 1.02765 1.17988 0.80123 0.87153 0.78738 1.43726 1.30605 1.15676 1.51054 1.90807 1.56137 1.53360 1.41406 1.21491 0.94176 0.93652 0.96079 1.21892 0.93436 0.94038 0.99007 1.98404 1.37853 1.89270 1.73449 0.92250 0.92659 0.93430 0.90973 0.92630 0.92933 0.92668 0.89994 0.90724 0.95521 0.91459 0.92730 0.81936 0.76464 0.76183 0.82490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 8.40 37.16 0.31 -1.73 16 2 C -0.11 -1.62 3.08 -90.62 -0.28 -1.90 16 3 C -0.14 -1.67 9.19 37.16 0.34 -1.33 16 4 C 0.12 2.11 4.76 -4.04 -0.02 2.10 16 5 N -0.56 -11.13 2.21 -176.03 -0.39 -11.52 16 6 C 0.20 4.17 2.71 -5.20 -0.01 4.15 16 7 C -0.50 -12.48 8.37 -34.44 -0.29 -12.76 16 8 H 0.07 2.05 8.06 -52.49 -0.42 1.62 16 9 C 0.08 1.92 5.47 -17.82 -0.10 1.82 16 10 N -0.90 -24.99 13.96 55.43 0.77 -24.22 16 11 Si 0.87 18.76 27.47 -169.99 -4.67 14.09 16 12 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 13 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 14 H -0.27 -5.52 6.54 56.52 0.37 -5.15 16 15 C 0.56 11.33 7.53 -12.15 -0.09 11.24 16 16 O -0.54 -11.16 13.61 5.36 0.07 -11.09 16 17 C 0.12 2.35 6.62 -82.91 -0.55 1.80 16 18 N -0.38 -7.14 4.86 -9.46 -0.05 -7.18 16 19 C 0.13 2.01 10.71 -17.17 -0.18 1.82 16 20 C -0.17 -2.51 5.89 -104.74 -0.62 -3.13 16 21 C 0.58 7.78 8.06 -12.26 -0.10 7.69 16 22 N -0.85 -8.11 8.83 30.56 0.27 -7.84 16 23 O -0.54 -8.85 17.25 5.34 0.09 -8.76 16 24 C -0.03 -0.41 9.51 -38.84 -0.37 -0.78 16 25 C -0.05 -0.90 6.36 -38.99 -0.25 -1.15 16 26 Cl -0.02 -0.31 26.01 -51.86 -1.35 -1.66 16 27 H 0.06 0.92 6.51 -51.93 -0.34 0.58 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.58 8.14 -51.92 -0.42 0.15 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 1.37 8.01 -51.93 -0.42 0.96 16 35 H 0.07 1.30 7.58 -51.93 -0.39 0.91 16 36 H 0.03 0.56 6.09 -51.93 -0.32 0.25 16 37 H 0.07 1.41 4.76 -51.98 -0.25 1.17 16 38 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 39 H 0.16 2.16 6.41 -52.48 -0.34 1.83 16 40 H 0.41 3.27 6.89 -40.82 -0.28 2.99 16 41 H 0.41 3.08 8.93 -40.82 -0.36 2.72 16 42 H 0.16 2.13 7.72 -52.49 -0.41 1.73 16 LS Contribution 359.75 15.07 5.42 5.42 Total: -1.00 -30.85 359.75 -7.25 -38.10 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -5.23 Total: 6.82 kcal Atomic # 6 Polarization: 10.05 SS G_CDS: -2.20 Total: 7.84 kcal Atomic # 7 Polarization: -51.37 SS G_CDS: 0.61 Total: -50.76 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: 0.17 Total: -19.85 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -4.67 Total: 14.09 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -1.35 Total: -1.66 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.85 -7.25 -38.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645627194.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.881 kcal (2) G-P(sol) polarization free energy of solvation -30.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds