Wall clock time and date at job start Tue Mar 31 2020 22:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46993 * 2 1 4 4 C 1.53002 * 109.47074 * 119.99657 * 2 1 3 5 5 N 1.46499 * 109.47222 * 64.99875 * 4 2 1 6 6 C 1.46498 * 120.00032 * 263.87183 * 5 4 2 7 7 C 1.50699 * 109.47104 * 261.88805 * 6 5 4 8 8 H 1.08001 * 119.99945 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00336 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00357 * 179.97438 * 9 7 6 11 11 Si 1.86804 * 119.99720 * 359.97438 * 9 7 6 12 12 H 1.48502 * 109.46669 * 90.00284 * 11 9 7 13 13 H 1.48495 * 109.47023 * 210.00138 * 11 9 7 14 14 H 1.48499 * 109.47277 * 330.00118 * 11 9 7 15 15 C 1.34775 * 119.99880 * 83.86592 * 5 4 2 16 16 O 1.21507 * 119.99994 * 1.93130 * 15 5 4 17 17 C 1.48250 * 120.00287 * 181.92758 * 15 5 4 18 18 N 1.32771 * 119.58526 * 355.29232 * 17 15 5 19 19 C 1.31355 * 121.81783 * 179.97438 * 18 17 15 20 20 C 1.39795 * 120.76120 * 0.02562 * 19 18 17 21 21 C 1.48005 * 120.45656 * 179.97438 * 20 19 18 22 22 N 1.34776 * 119.99945 * 359.97438 * 21 20 19 23 23 O 1.21528 * 120.00180 * 179.97438 * 21 20 19 24 24 C 1.39773 * 119.09278 * 0.25128 * 20 19 18 25 25 C 1.38679 * 118.34035 * 359.46386 * 24 20 19 26 26 Cl 1.73601 * 120.41822 * 180.25919 * 25 24 20 27 27 H 1.09000 * 109.47169 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47346 * 300.00234 * 1 2 3 29 29 H 1.09007 * 109.46982 * 60.00355 * 1 2 3 30 30 H 1.08994 * 109.47263 * 239.99817 * 2 1 3 31 31 H 1.08995 * 109.47275 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47013 * 299.99525 * 3 2 1 33 33 H 1.08994 * 109.47265 * 59.99819 * 3 2 1 34 34 H 1.09003 * 109.47169 * 305.00144 * 4 2 1 35 35 H 1.08991 * 109.47393 * 185.00279 * 4 2 1 36 36 H 1.08990 * 109.47427 * 21.89115 * 6 5 4 37 37 H 1.09003 * 109.46890 * 141.89510 * 6 5 4 38 38 H 0.96997 * 120.00292 * 179.97438 * 10 9 7 39 39 H 1.08005 * 119.61945 * 180.02562 * 19 18 17 40 40 H 0.97002 * 119.99849 * 0.02562 * 22 21 20 41 41 H 0.97004 * 120.00468 * 179.72525 * 22 21 20 42 42 H 1.07997 * 120.82927 * 179.70758 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6524 -2.1328 1.1908 6 6 0.4413 -2.5889 1.8773 7 6 0.8141 -3.1874 3.2091 8 1 1.8496 -3.2246 3.5136 9 6 -0.1667 -3.6883 4.0386 10 7 0.1586 -4.2111 5.2008 11 14 -1.9578 -3.6246 3.5117 12 1 -2.2998 -4.8646 2.7697 13 1 -2.8234 -3.5118 4.7130 14 1 -2.1739 -2.4467 2.6336 15 6 2.4100 -3.0117 0.5052 16 8 3.4331 -2.6402 -0.0349 17 6 1.9952 -4.4318 0.4101 18 7 0.9277 -4.8492 1.0802 19 6 0.5209 -6.0970 1.0272 20 6 1.2057 -7.0401 0.2551 21 6 0.7418 -8.4445 0.2007 22 7 -0.3474 -8.8219 0.8989 23 8 1.3431 -9.2573 -0.4735 24 6 2.3379 -6.6398 -0.4601 25 6 2.7306 -5.3120 -0.3821 26 17 4.1247 -4.7550 -1.2537 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 1.8933 -0.5138 -0.8899 31 1 3.1299 1.4426 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6053 -0.2616 2.1370 35 1 3.1262 -0.6443 1.2953 36 1 -0.2282 -1.7432 2.0336 37 1 -0.0599 -3.3414 1.2684 38 1 -0.5314 -4.5632 5.7845 39 1 -0.3526 -6.3980 1.5865 40 1 -0.8276 -8.1730 1.4367 41 1 -0.6539 -9.7414 0.8601 42 1 2.8909 -7.3460 -1.0616 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645627194.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:38 Heat of formation + Delta-G solvation = -40.721836 kcal Electronic energy + Delta-G solvation = -28112.267503 eV Core-core repulsion = 24118.467956 eV Total energy + Delta-G solvation = -3993.799547 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.10995 -40.79433 -39.66054 -37.86592 -37.42979 -35.68839 -34.99115 -34.16717 -33.56968 -32.26317 -29.94918 -27.97984 -27.92014 -25.95483 -24.86343 -24.31994 -22.36271 -21.61771 -20.59577 -19.30820 -18.97428 -18.67985 -18.11775 -17.48564 -16.73816 -16.64589 -16.56784 -16.24419 -16.02741 -15.80992 -15.30798 -15.11197 -14.86923 -14.74046 -14.43677 -14.26262 -14.05699 -13.66900 -13.40606 -13.13570 -13.01904 -12.92794 -12.56333 -12.51651 -12.38321 -12.07444 -11.95543 -11.73270 -11.61530 -11.54960 -11.53699 -11.06793 -10.89504 -10.80183 -10.58785 -10.21988 -9.98951 -9.31692 -8.10879 -6.10936 -0.98603 -0.14586 0.88271 1.29552 1.44834 1.52166 1.60233 1.96666 2.08983 2.31818 2.49031 2.65786 3.01934 3.26253 3.40004 3.51353 3.63840 3.79895 3.87877 3.99264 4.04490 4.20695 4.45416 4.60518 4.64492 4.70608 4.80386 4.89928 4.91516 4.98783 5.03996 5.07546 5.23879 5.34104 5.45777 5.46614 5.66316 5.76742 5.81503 6.21016 6.30720 6.48673 6.63610 6.85668 7.11681 7.19707 7.49382 9.06169 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.008810 B = 0.005954 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3177.501206 B = 4701.878578 C = 7074.306421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.103 4.103 3 C -0.136 4.136 4 C 0.119 3.881 5 N -0.570 5.570 6 C 0.211 3.789 7 C -0.493 4.493 8 H 0.014 0.986 9 C 0.027 3.973 10 N -0.951 5.951 11 Si 0.928 3.072 12 H -0.240 1.240 13 H -0.298 1.298 14 H -0.251 1.251 15 C 0.551 3.449 16 O -0.551 6.551 17 C 0.100 3.900 18 N -0.406 5.406 19 C 0.127 3.873 20 C -0.159 4.159 21 C 0.578 3.422 22 N -0.822 5.822 23 O -0.569 6.569 24 C -0.020 4.020 25 C -0.056 4.056 26 Cl -0.017 7.017 27 H 0.041 0.959 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.081 0.919 35 H 0.063 0.937 36 H 0.033 0.967 37 H 0.080 0.920 38 H 0.263 0.737 39 H 0.189 0.811 40 H 0.416 0.584 41 H 0.420 0.580 42 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.513 -1.098 -11.261 12.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.123 4.123 3 C -0.193 4.193 4 C -0.003 4.003 5 N -0.298 5.298 6 C 0.089 3.911 7 C -0.532 4.532 8 H 0.033 0.967 9 C -0.170 4.170 10 N -0.593 5.593 11 Si 0.751 3.249 12 H -0.163 1.163 13 H -0.225 1.225 14 H -0.175 1.175 15 C 0.338 3.662 16 O -0.430 6.430 17 C -0.038 4.038 18 N -0.116 5.116 19 C -0.034 4.034 20 C -0.165 4.165 21 C 0.362 3.638 22 N -0.387 5.387 23 O -0.449 6.449 24 C -0.047 4.047 25 C -0.087 4.087 26 Cl 0.012 6.988 27 H 0.060 0.940 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.082 0.918 36 H 0.051 0.949 37 H 0.097 0.903 38 H 0.072 0.928 39 H 0.206 0.794 40 H 0.248 0.752 41 H 0.254 0.746 42 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -3.906 -0.653 -11.412 12.080 hybrid contribution -0.183 -0.778 0.405 0.896 sum -4.089 -1.431 -11.007 11.829 Atomic orbital electron populations 1.21847 0.94468 1.01389 1.02326 1.21406 0.96697 0.97159 0.97039 1.21702 1.00937 0.93909 1.02787 1.21650 1.00028 0.79651 0.98974 1.47922 1.25989 1.08060 1.47847 1.20284 0.82969 0.95719 0.92106 1.21188 0.93045 1.38021 1.00915 0.96747 1.25497 1.03075 0.94217 0.94224 1.70082 1.34998 1.42536 1.11658 0.86029 0.79468 0.81344 0.78056 1.16310 1.22504 1.17478 1.17995 0.83692 0.84649 0.79903 1.90767 1.24697 1.78970 1.48608 1.21367 0.92943 0.95400 0.94137 1.68698 1.11316 1.17145 1.14430 1.23680 0.98801 0.87578 0.93332 1.21170 0.98136 0.95712 1.01443 1.17792 0.80828 0.86169 0.78996 1.43553 1.28975 1.16746 1.49449 1.90809 1.57369 1.53738 1.42979 1.21706 0.94237 0.92979 0.95771 1.21932 0.93384 0.94495 0.98840 1.98400 1.37715 1.89420 1.73291 0.93986 0.92221 0.91281 0.92502 0.92778 0.91131 0.91760 0.90077 0.91818 0.94936 0.90283 0.92788 0.79397 0.75197 0.74574 0.80879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.74 8.40 71.98 0.60 -3.13 16 2 C -0.10 -2.91 3.08 -10.79 -0.03 -2.95 16 3 C -0.14 -2.99 9.19 71.98 0.66 -2.33 16 4 C 0.12 4.13 4.76 86.38 0.41 4.54 16 5 N -0.57 -22.90 2.21 -829.13 -1.83 -24.73 16 6 C 0.21 8.88 2.71 85.63 0.23 9.11 16 7 C -0.49 -25.32 8.37 25.60 0.21 -25.11 16 8 H 0.01 0.88 8.06 -2.91 -0.02 0.85 16 9 C 0.03 1.38 5.47 84.65 0.46 1.84 16 10 N -0.95 -54.09 13.96 21.45 0.30 -53.79 16 11 Si 0.93 37.18 27.47 68.60 1.88 39.07 16 12 H -0.24 -8.16 7.11 99.48 0.71 -7.45 16 13 H -0.30 -12.41 7.11 99.48 0.71 -11.70 16 14 H -0.25 -9.42 6.54 99.48 0.65 -8.77 16 15 C 0.55 22.81 7.53 86.91 0.65 23.46 16 16 O -0.55 -23.49 13.61 -3.74 -0.05 -23.54 16 17 C 0.10 3.82 6.62 41.95 0.28 4.10 16 18 N -0.41 -15.07 4.86 -183.86 -0.89 -15.97 16 19 C 0.13 3.74 10.71 85.14 0.91 4.65 16 20 C -0.16 -4.31 5.89 -19.94 -0.12 -4.43 16 21 C 0.58 14.14 8.06 86.83 0.70 14.84 16 22 N -0.82 -13.00 8.83 -175.50 -1.55 -14.55 16 23 O -0.57 -17.43 17.25 -3.81 -0.07 -17.50 16 24 C -0.02 -0.58 9.51 22.75 0.22 -0.36 16 25 C -0.06 -1.88 6.36 22.65 0.14 -1.73 16 26 Cl -0.02 -0.57 26.01 -2.72 -0.07 -0.64 16 27 H 0.04 1.23 6.51 -2.39 -0.02 1.22 16 28 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 29 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 30 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.08 2.77 8.01 -2.39 -0.02 2.75 16 35 H 0.06 2.31 7.58 -2.39 -0.02 2.29 16 36 H 0.03 1.34 6.09 -2.39 -0.01 1.32 16 37 H 0.08 3.22 4.76 -2.48 -0.01 3.21 16 38 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 39 H 0.19 4.38 6.41 -2.91 -0.02 4.36 16 40 H 0.42 5.10 6.89 -92.71 -0.64 4.46 16 41 H 0.42 4.92 8.93 -92.71 -0.83 4.09 16 42 H 0.17 4.42 7.72 -2.91 -0.02 4.39 16 Total: -1.00 -69.00 359.75 2.63 -66.37 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: -0.43 Total: 22.77 kcal Atomic # 6 Polarization: 17.17 SS G_CDS: 5.34 Total: 22.51 kcal Atomic # 7 Polarization: -105.06 SS G_CDS: -3.98 Total: -109.04 kcal Atomic # 8 Polarization: -40.93 SS G_CDS: -0.12 Total: -41.04 kcal Atomic # 14 Polarization: 37.18 SS G_CDS: 1.88 Total: 39.07 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -0.07 Total: -0.64 kcal Total: -69.00 2.63 -66.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645627194.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.651 kcal (2) G-P(sol) polarization free energy of solvation -69.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds