Wall clock time and date at job start Tue Mar 31 2020 22:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30742 * 1 3 3 Si 1.86803 * 120.00043 * 2 1 4 4 H 1.48502 * 109.47050 * 240.00172 * 3 2 1 5 5 H 1.48498 * 109.46672 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47114 * 120.00091 * 3 2 1 7 7 C 1.40024 * 120.00232 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00440 * 180.02562 * 7 2 1 9 9 C 1.41318 * 119.99950 * 359.97438 * 7 2 1 10 10 C 1.40588 * 119.78465 * 180.02562 * 9 7 2 11 11 C 1.38353 * 119.14354 * 180.02562 * 10 9 7 12 12 C 1.38636 * 118.68364 * 359.74697 * 11 10 9 13 13 C 1.39752 * 119.49047 * 0.47705 * 12 11 10 14 14 N 1.38822 * 119.58617 * 179.79378 * 13 12 11 15 15 C 1.46962 * 111.00486 * 180.02562 * 14 13 12 16 16 C 1.53465 * 109.74256 * 165.12430 * 15 14 13 17 17 N 1.46308 * 108.17555 * 49.60674 * 16 15 14 18 18 C 1.35943 * 123.86388 * 343.72835 * 17 16 15 19 19 N 1.29626 * 107.36032 * 179.69461 * 18 17 16 20 20 N 1.28982 * 109.47648 * 0.14457 * 19 18 17 21 21 C 1.30930 * 109.75467 * 359.94924 * 20 19 18 22 22 C 1.50699 * 126.48294 * 179.90144 * 21 20 19 23 23 F 1.39892 * 109.47278 * 15.04124 * 22 21 20 24 24 F 1.39897 * 109.46679 * 135.04132 * 22 21 20 25 25 F 1.39897 * 109.46905 * 255.03736 * 22 21 20 26 26 C 1.47396 * 111.00048 * 55.76992 * 14 13 12 27 27 N 1.31980 * 120.82889 * 359.50919 * 13 12 11 28 28 H 0.97002 * 119.99944 * 359.97438 * 1 2 3 29 29 H 1.07995 * 120.42991 * 0.02562 * 10 9 7 30 30 H 1.08001 * 120.65458 * 179.97438 * 11 10 9 31 31 H 1.08003 * 120.25409 * 180.27090 * 12 11 10 32 32 H 1.09007 * 109.42726 * 285.21305 * 15 14 13 33 33 H 1.09004 * 109.42708 * 45.04266 * 15 14 13 34 34 H 1.08990 * 109.72813 * 289.92940 * 16 15 14 35 35 H 1.09007 * 109.75109 * 169.28978 * 16 15 14 36 36 H 1.09002 * 109.74843 * 293.84173 * 26 14 13 37 37 H 1.08996 * 109.75344 * 54.57727 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0952 1.6964 -1.2125 5 1 1.2764 2.7464 0.0006 6 1 3.0952 1.6964 1.2125 7 6 2.0076 -1.2126 -0.0005 8 1 3.0875 -1.2127 -0.0001 9 6 1.3010 -2.4365 -0.0005 10 6 2.0086 -3.6513 -0.0005 11 6 1.3035 -4.8417 -0.0011 12 6 -0.0820 -4.7944 0.0038 13 6 -0.7281 -3.5552 -0.0011 14 7 -2.1155 -3.5056 -0.0006 15 6 -2.5928 -2.1156 -0.0068 16 6 -4.0817 -2.0805 -0.3770 17 7 -4.7838 -3.0514 0.4627 18 6 -4.1626 -4.0401 1.1588 19 7 -5.0796 -4.7023 1.7920 20 7 -6.2352 -4.1914 1.5330 21 6 -6.0975 -3.1752 0.7190 22 6 -7.2027 -2.3088 0.1724 23 9 -8.3699 -2.5183 0.9145 24 9 -6.8284 -0.9638 0.2619 25 9 -7.4357 -2.6399 -1.1667 26 6 -2.6705 -4.2555 1.1405 27 7 -0.0359 -2.4315 -0.0005 28 1 -0.4850 0.8401 0.0004 29 1 3.0885 -3.6553 -0.0001 30 1 1.8223 -5.7890 -0.0015 31 1 -0.6577 -5.7082 0.0079 32 1 -2.4549 -1.6805 0.9831 33 1 -2.0240 -1.5402 -0.7372 34 1 -4.2061 -2.3445 -1.4271 35 1 -4.4822 -1.0825 -0.1987 36 1 -2.4532 -5.3172 1.0242 37 1 -2.2337 -3.8891 2.0695 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649758120.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:22 Heat of formation + Delta-G solvation = -18.617904 kcal Electronic energy + Delta-G solvation = -29512.736068 eV Core-core repulsion = 24876.930785 eV Total energy + Delta-G solvation = -4635.805283 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.100 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -51.52558 -49.05438 -48.99637 -44.87398 -40.87041 -38.63742 -36.24311 -35.26759 -33.50701 -32.38054 -31.59400 -30.90589 -28.24438 -27.41690 -26.86976 -25.13343 -23.37504 -23.08018 -22.52762 -21.12885 -19.98618 -19.83095 -19.56495 -19.41265 -18.14279 -17.92408 -17.49640 -16.65435 -16.53794 -16.20173 -16.16130 -15.86743 -15.78062 -15.46384 -15.37057 -15.14997 -15.11746 -15.05807 -14.78407 -14.35932 -14.15438 -13.95215 -13.73185 -13.23851 -12.91205 -12.86889 -12.79178 -12.65558 -12.59573 -12.29887 -12.04752 -11.83201 -11.61187 -11.30036 -10.94732 -10.57749 -9.95723 -9.58095 -8.95802 -8.32746 -6.49644 0.03275 0.53314 0.82336 1.14478 1.17635 1.28459 1.44198 1.52508 1.55383 2.06573 2.23456 2.32063 2.61317 2.84210 2.90169 2.94248 3.23906 3.57110 3.83571 3.89021 3.99918 4.11644 4.16172 4.22994 4.39584 4.48286 4.56664 4.68174 4.83924 4.92886 4.93435 5.08987 5.25361 5.27792 5.51027 5.74559 5.86917 5.91472 6.23562 6.37978 6.76113 7.00763 7.02271 8.08960 8.42164 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.014649 B = 0.003579 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.920641 B = 7822.176798 C = 9313.722220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.743 5.743 2 C 0.036 3.964 3 Si 0.977 3.023 4 H -0.263 1.263 5 H -0.268 1.268 6 H -0.266 1.266 7 C -0.464 4.464 8 H 0.085 0.915 9 C 0.244 3.756 10 C -0.310 4.310 11 C -0.040 4.040 12 C -0.314 4.314 13 C 0.305 3.695 14 N -0.479 5.479 15 C 0.067 3.933 16 C 0.099 3.901 17 N -0.435 5.435 18 C 0.220 3.780 19 N -0.295 5.295 20 N -0.256 5.256 21 C 0.078 3.922 22 C 0.584 3.416 23 F -0.147 7.147 24 F -0.157 7.157 25 F -0.156 7.156 26 C 0.152 3.848 27 N -0.527 5.527 28 H 0.280 0.720 29 H 0.106 0.894 30 H 0.134 0.866 31 H 0.125 0.875 32 H 0.043 0.957 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.130 0.870 36 H 0.138 0.862 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.682 0.084 -1.197 9.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.365 5.365 2 C -0.187 4.187 3 Si 0.799 3.201 4 H -0.188 1.188 5 H -0.193 1.193 6 H -0.190 1.190 7 C -0.495 4.495 8 H 0.103 0.897 9 C 0.118 3.882 10 C -0.333 4.333 11 C -0.064 4.064 12 C -0.338 4.338 13 C 0.068 3.932 14 N -0.199 5.199 15 C -0.061 4.061 16 C -0.022 4.022 17 N -0.124 5.124 18 C -0.048 4.048 19 N -0.136 5.136 20 N -0.100 5.100 21 C -0.191 4.191 22 C 0.527 3.473 23 F -0.128 7.128 24 F -0.138 7.138 25 F -0.137 7.137 26 C 0.024 3.976 27 N -0.246 5.246 28 H 0.090 0.910 29 H 0.124 0.876 30 H 0.152 0.848 31 H 0.143 0.857 32 H 0.061 0.939 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.148 0.852 36 H 0.155 0.845 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.175 -0.136 -0.796 11.204 hybrid contribution 1.626 1.173 -0.232 2.018 sum -9.549 1.037 -1.029 9.660 Atomic orbital electron populations 1.70080 1.08273 1.28967 1.29200 1.26709 0.95779 1.03639 0.92529 0.85323 0.78826 0.76294 0.79666 1.18798 1.19256 1.19026 1.19889 0.94702 0.90413 1.44519 0.89721 1.18679 0.87879 0.93135 0.88468 1.21872 0.99427 0.93732 1.18222 1.21119 0.93744 0.97503 0.94080 1.21045 0.94802 0.96306 1.21691 1.19853 0.87924 0.91008 0.94450 1.59357 1.06020 1.14854 1.39643 1.22153 0.91435 0.88799 1.03709 1.22900 0.91607 0.92184 0.95541 1.46077 1.05138 1.25577 1.35620 1.24952 0.98168 0.88082 0.93580 1.74054 0.94224 1.23525 1.21836 1.74551 1.17646 1.05945 1.11831 1.24223 0.85683 1.03051 1.06140 1.16060 0.78892 0.76718 0.75680 1.93284 1.48412 1.94594 1.76539 1.93276 1.91165 1.33454 1.95931 1.93300 1.94642 1.92246 1.33517 1.20799 0.81426 1.02431 0.92958 1.68511 1.08145 1.25862 1.22038 0.90974 0.87579 0.84847 0.85730 0.93904 0.86236 0.86148 0.85209 0.84472 0.90370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -34.15 11.03 21.84 0.24 -33.91 16 2 C 0.04 1.66 5.50 85.29 0.47 2.12 16 3 Si 0.98 34.73 29.56 68.60 2.03 36.76 16 4 H -0.26 -9.24 7.11 99.48 0.71 -8.54 16 5 H -0.27 -9.03 7.11 99.48 0.71 -8.33 16 6 H -0.27 -9.39 7.11 99.48 0.71 -8.68 16 7 C -0.46 -22.93 9.14 23.46 0.21 -22.71 16 8 H 0.08 3.98 7.85 -2.91 -0.02 3.96 16 9 C 0.24 12.22 6.55 40.19 0.26 12.49 16 10 C -0.31 -13.89 9.83 22.87 0.22 -13.67 16 11 C -0.04 -1.57 10.15 22.39 0.23 -1.34 16 12 C -0.31 -12.10 9.31 22.73 0.21 -11.89 16 13 C 0.30 12.67 6.39 133.40 0.85 13.52 16 14 N -0.48 -16.55 4.68 -703.62 -3.29 -19.84 16 15 C 0.07 2.19 4.89 86.45 0.42 2.61 16 16 C 0.10 2.43 6.93 86.57 0.60 3.03 16 17 N -0.44 -12.18 3.12 -504.45 -1.57 -13.75 16 18 C 0.22 6.78 7.86 138.12 1.09 7.86 16 19 N -0.29 -9.84 12.20 -50.27 -0.61 -10.46 16 20 N -0.26 -8.34 12.08 -50.58 -0.61 -8.95 16 21 C 0.08 2.17 7.35 138.20 1.02 3.19 16 22 C 0.58 13.21 3.41 71.24 0.24 13.45 16 23 F -0.15 -3.39 17.19 44.97 0.77 -2.62 16 24 F -0.16 -3.23 16.03 44.97 0.72 -2.51 16 25 F -0.16 -3.34 17.30 44.97 0.78 -2.56 16 26 C 0.15 4.61 5.45 85.48 0.47 5.07 16 27 N -0.53 -25.19 5.97 -186.60 -1.11 -26.30 16 28 H 0.28 11.58 8.29 -92.71 -0.77 10.81 16 29 H 0.11 4.46 8.06 -2.91 -0.02 4.43 16 30 H 0.13 4.23 8.06 -2.91 -0.02 4.20 16 31 H 0.12 4.10 7.23 -2.91 -0.02 4.08 16 32 H 0.04 1.55 8.08 -2.38 -0.02 1.53 16 33 H 0.12 4.55 6.85 -2.38 -0.02 4.53 16 34 H 0.12 2.63 8.14 -2.39 -0.02 2.61 16 35 H 0.13 2.62 7.11 -2.38 -0.02 2.60 16 36 H 0.14 3.70 7.13 -2.39 -0.02 3.69 16 37 H 0.08 2.45 8.12 -2.39 -0.02 2.43 16 Total: -1.00 -55.86 328.15 4.79 -51.08 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: 1.15 Total: 19.33 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: 6.30 Total: 13.74 kcal Atomic # 7 Polarization: -106.25 SS G_CDS: -6.96 Total: -113.21 kcal Atomic # 9 Polarization: -9.96 SS G_CDS: 2.27 Total: -7.69 kcal Atomic # 14 Polarization: 34.73 SS G_CDS: 2.03 Total: 36.76 kcal Total: -55.86 4.79 -51.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649758120.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.458 kcal (2) G-P(sol) polarization free energy of solvation -55.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds