Wall clock time and date at job start Tue Mar 31 2020 22:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52999 * 109.46588 * 2 1 4 4 C 1.52992 * 109.47065 * 239.99763 * 2 1 3 5 5 C 1.50701 * 109.46989 * 60.00326 * 4 2 1 6 6 H 1.07997 * 120.00173 * 359.97438 * 5 4 2 7 7 C 1.37886 * 119.99732 * 180.02562 * 5 4 2 8 8 N 1.31506 * 120.00150 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99671 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47329 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47188 * 119.99872 * 9 7 5 12 12 H 1.48504 * 109.46658 * 239.99463 * 9 7 5 13 13 C 1.53005 * 109.46906 * 119.99558 * 2 1 3 14 14 N 1.46494 * 109.47388 * 300.00230 * 13 2 1 15 15 C 1.34777 * 120.00029 * 180.02562 * 14 13 2 16 16 O 1.21502 * 119.99793 * 359.97438 * 15 14 13 17 17 C 1.48255 * 120.00153 * 179.97438 * 15 14 13 18 18 N 1.32769 * 119.58403 * 0.02562 * 17 15 14 19 19 C 1.31356 * 121.82048 * 179.97438 * 18 17 15 20 20 C 1.39804 * 120.75484 * 0.02562 * 19 18 17 21 21 C 1.48008 * 120.45443 * 179.97438 * 20 19 18 22 22 N 1.34777 * 119.99670 * 359.97438 * 21 20 19 23 23 O 1.21523 * 120.00022 * 180.02562 * 21 20 19 24 24 C 1.39768 * 119.09280 * 0.25761 * 20 19 18 25 25 C 1.38678 * 118.34598 * 359.45779 * 24 20 19 26 26 Cl 1.73599 * 120.42641 * 180.25978 * 25 24 20 27 27 H 1.08995 * 109.46920 * 299.99936 * 1 2 3 28 28 H 1.08998 * 109.47174 * 60.00156 * 1 2 3 29 29 H 1.09001 * 109.46551 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46476 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47690 * 299.99526 * 3 2 1 32 32 H 1.08995 * 109.47438 * 60.00381 * 3 2 1 33 33 H 1.09001 * 109.46694 * 179.97438 * 4 2 1 34 34 H 1.08996 * 109.47146 * 299.99768 * 4 2 1 35 35 H 0.97000 * 120.00079 * 180.02562 * 8 7 5 36 36 H 1.09004 * 109.46520 * 179.97438 * 13 2 1 37 37 H 1.09007 * 109.46617 * 60.00576 * 13 2 1 38 38 H 0.97003 * 120.00100 * 0.02562 * 14 13 2 39 39 H 1.07993 * 119.62544 * 179.97438 * 19 18 17 40 40 H 0.97001 * 120.00485 * 0.02562 * 22 21 20 41 41 H 0.97005 * 119.99790 * 179.72347 * 22 21 20 42 42 H 1.07995 * 120.83013 * 179.70831 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5378 -0.0108 -2.4796 6 1 0.9166 0.8670 -2.3806 7 6 1.8704 -0.4823 -3.7319 8 7 2.6264 -1.5515 -3.8526 9 14 1.2472 0.3979 -5.2572 10 1 0.4219 1.5644 -4.8530 11 1 2.4019 0.8644 -6.0660 12 1 0.4220 -0.5358 -6.0650 13 6 2.0401 -0.7212 1.2494 14 7 1.5517 -0.0306 2.4454 15 6 1.8777 -0.4907 3.6696 16 8 2.5762 -1.4786 3.7811 17 6 1.3840 0.2085 4.8801 18 7 0.6207 1.2869 4.7486 19 6 0.1590 1.9398 5.7907 20 6 0.4589 1.5176 7.0893 21 6 -0.0644 2.2586 8.2588 22 7 -0.8354 3.3488 8.0757 23 8 0.2018 1.8845 9.3839 24 6 1.2646 0.3896 7.2681 25 6 1.7267 -0.2747 6.1419 26 17 2.7254 -1.6856 6.3014 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1301 -0.7208 -1.2493 34 1 1.6768 -1.7489 -1.2491 35 1 2.8608 -1.8830 -4.7335 36 1 3.1301 -0.7215 1.2491 37 1 1.6767 -1.7489 1.2493 38 1 0.9937 0.7579 2.3564 39 1 -0.4586 2.8133 5.6427 40 1 -1.0476 3.6477 7.1776 41 1 -1.1817 3.8322 8.8422 42 1 1.5177 0.0416 8.2586 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649807540.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:15 Heat of formation + Delta-G solvation = -49.939048 kcal Electronic energy + Delta-G solvation = -26341.901667 eV Core-core repulsion = 22347.702432 eV Total energy + Delta-G solvation = -3994.199235 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.36739 -39.89270 -38.89624 -37.17300 -36.81604 -34.51517 -33.83855 -33.04632 -32.08644 -31.61036 -27.35286 -26.81247 -26.51050 -25.37833 -24.26610 -23.01008 -21.76802 -20.68796 -19.13305 -18.65593 -18.06788 -17.40224 -16.75153 -16.31479 -16.02868 -15.83462 -15.41121 -15.23646 -15.01516 -14.49617 -14.29284 -14.26405 -13.77806 -13.41548 -13.40613 -13.08323 -12.76009 -12.36803 -12.15282 -12.07516 -11.59627 -11.17439 -11.10567 -11.03013 -10.84289 -10.65104 -10.48166 -10.44149 -10.41911 -10.35361 -10.24978 -9.89119 -9.62530 -9.54224 -9.18611 -8.92829 -8.77651 -8.37034 -6.00848 -4.01932 -0.35850 0.41230 1.65555 1.95134 2.72902 2.75306 2.99254 3.29507 3.37559 3.37771 3.39941 3.59005 4.01361 4.12493 4.24196 4.38939 4.44520 4.59159 5.12333 5.25022 5.34884 5.47546 5.60118 5.60162 5.74774 6.11325 6.17320 6.21172 6.24106 6.37879 6.49488 6.60849 6.62992 6.71899 6.94853 7.04991 7.06720 7.11232 7.55054 7.62298 7.64760 7.75190 7.97920 8.21825 8.40005 9.03030 9.61228 11.10640 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.019500 B = 0.002358 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.550292 B =11869.181370 C =13108.368781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.072 4.072 3 C -0.128 4.128 4 C 0.035 3.965 5 C -0.510 4.510 6 H 0.060 0.940 7 C 0.055 3.945 8 N -0.894 5.894 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.126 3.874 14 N -0.695 5.695 15 C 0.552 3.448 16 O -0.510 6.510 17 C 0.122 3.878 18 N -0.444 5.444 19 C 0.136 3.864 20 C -0.167 4.167 21 C 0.572 3.428 22 N -0.845 5.845 23 O -0.529 6.529 24 C -0.014 4.014 25 C -0.050 4.050 26 Cl 0.000 7.000 27 H 0.030 0.970 28 H 0.067 0.933 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.067 0.933 32 H 0.030 0.970 33 H 0.019 0.981 34 H 0.019 0.981 35 H 0.259 0.741 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.409 0.591 39 H 0.172 0.828 40 H 0.403 0.597 41 H 0.410 0.590 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.827 9.663 23.486 26.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.072 4.072 3 C -0.185 4.185 4 C -0.002 4.002 5 C -0.548 4.548 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.212 1.212 13 C 0.003 3.997 14 N -0.346 5.346 15 C 0.334 3.666 16 O -0.385 6.385 17 C -0.017 4.017 18 N -0.155 5.155 19 C -0.026 4.026 20 C -0.173 4.173 21 C 0.356 3.644 22 N -0.410 5.410 23 O -0.406 6.406 24 C -0.041 4.041 25 C -0.080 4.080 26 Cl 0.030 6.970 27 H 0.049 0.951 28 H 0.086 0.914 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.049 0.951 33 H 0.037 0.963 34 H 0.037 0.963 35 H 0.069 0.931 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.246 0.754 39 H 0.189 0.811 40 H 0.233 0.767 41 H 0.242 0.758 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -6.054 8.575 23.192 25.457 hybrid contribution -0.600 0.839 -0.271 1.066 sum -6.654 9.414 22.921 25.657 Atomic orbital electron populations 1.21774 0.95196 1.01195 1.00385 1.20909 0.95566 0.95904 0.94842 1.21773 1.00532 0.95859 1.00385 1.19101 0.96400 0.95250 0.89448 1.21213 1.31086 1.12045 0.90462 0.92178 1.25018 0.95344 0.95087 0.99104 1.69969 1.37004 1.23051 1.23336 0.86595 0.78600 0.79674 0.83463 1.19799 1.21153 1.21157 1.21764 0.99194 0.96174 0.82525 1.46084 1.51750 1.31767 1.05043 1.17722 0.81722 0.84386 0.82763 1.90901 1.36890 1.24812 1.85885 1.21561 0.94348 0.92330 0.93441 1.67757 1.08253 1.05646 1.33812 1.23057 0.95255 0.97756 0.86498 1.21053 1.02539 0.98562 0.95152 1.17895 0.78110 0.80329 0.88031 1.43699 1.53854 1.30400 1.13029 1.90860 1.58124 1.67233 1.24372 1.21713 0.91486 0.91484 0.99406 1.21943 0.98368 0.93844 0.93889 1.98461 1.65510 1.35352 1.97709 0.95082 0.91366 0.93359 0.93361 0.91365 0.95082 0.96282 0.96280 0.93096 0.91333 0.91337 0.75411 0.81087 0.76678 0.75767 0.81756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 2 C -0.07 -1.33 0.54 -154.51 -0.08 -1.41 16 3 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 4 C 0.04 0.85 4.04 -27.89 -0.11 0.74 16 5 C -0.51 -13.30 7.65 -34.44 -0.26 -13.56 16 6 H 0.06 1.51 5.68 -52.49 -0.30 1.21 16 7 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 8 N -0.89 -26.13 13.29 55.43 0.74 -25.40 16 9 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 10 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 13 C 0.13 2.15 4.56 -4.04 -0.02 2.14 16 14 N -0.69 -10.16 4.95 -61.12 -0.30 -10.46 16 15 C 0.55 8.26 7.81 -12.14 -0.09 8.17 16 16 O -0.51 -8.92 13.92 5.36 0.07 -8.85 16 17 C 0.12 1.49 6.75 -82.91 -0.56 0.93 16 18 N -0.44 -4.44 9.52 -9.46 -0.09 -4.53 16 19 C 0.14 0.91 10.71 -17.17 -0.18 0.73 16 20 C -0.17 -1.27 5.89 -104.74 -0.62 -1.89 16 21 C 0.57 4.19 8.06 -12.25 -0.10 4.09 16 22 N -0.85 -2.53 8.83 30.57 0.27 -2.26 16 23 O -0.53 -5.95 17.25 5.35 0.09 -5.86 16 24 C -0.01 -0.13 9.51 -38.85 -0.37 -0.50 16 25 C -0.05 -0.56 6.36 -38.99 -0.25 -0.81 16 26 Cl 0.00 0.00 26.00 -51.86 -1.35 -1.35 16 27 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 28 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 32 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 33 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 36 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 37 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 38 H 0.41 5.38 5.49 -40.82 -0.22 5.15 16 39 H 0.17 0.40 6.41 -52.49 -0.34 0.06 16 40 H 0.40 0.07 6.89 -40.82 -0.28 -0.21 16 41 H 0.41 0.77 8.93 -40.82 -0.36 0.41 16 42 H 0.16 1.36 7.72 -52.49 -0.41 0.95 16 LS Contribution 363.29 15.07 5.47 5.47 Total: -1.00 -33.28 363.29 -7.24 -40.52 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -4.98 Total: 0.51 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: -2.15 Total: -3.75 kcal Atomic # 7 Polarization: -43.27 SS G_CDS: 0.61 Total: -42.65 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: 0.17 Total: -14.70 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 17 Polarization: 0.00 SS G_CDS: -1.35 Total: -1.35 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.28 -7.24 -40.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649807540.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.416 kcal (2) G-P(sol) polarization free energy of solvation -33.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds