Wall clock time and date at job start Tue Mar 31 2020 22:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52999 * 109.46588 * 2 1 4 4 C 1.52992 * 109.47065 * 239.99763 * 2 1 3 5 5 C 1.50701 * 109.46989 * 60.00326 * 4 2 1 6 6 H 1.07997 * 120.00173 * 359.97438 * 5 4 2 7 7 C 1.37886 * 119.99732 * 180.02562 * 5 4 2 8 8 N 1.31506 * 120.00150 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99671 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47329 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47188 * 119.99872 * 9 7 5 12 12 H 1.48504 * 109.46658 * 239.99463 * 9 7 5 13 13 C 1.53005 * 109.46906 * 119.99558 * 2 1 3 14 14 N 1.46494 * 109.47388 * 300.00230 * 13 2 1 15 15 C 1.34777 * 120.00029 * 180.02562 * 14 13 2 16 16 O 1.21502 * 119.99793 * 359.97438 * 15 14 13 17 17 C 1.48255 * 120.00153 * 179.97438 * 15 14 13 18 18 N 1.32769 * 119.58403 * 0.02562 * 17 15 14 19 19 C 1.31356 * 121.82048 * 179.97438 * 18 17 15 20 20 C 1.39804 * 120.75484 * 0.02562 * 19 18 17 21 21 C 1.48008 * 120.45443 * 179.97438 * 20 19 18 22 22 N 1.34777 * 119.99670 * 359.97438 * 21 20 19 23 23 O 1.21523 * 120.00022 * 180.02562 * 21 20 19 24 24 C 1.39768 * 119.09280 * 0.25761 * 20 19 18 25 25 C 1.38678 * 118.34598 * 359.45779 * 24 20 19 26 26 Cl 1.73599 * 120.42641 * 180.25978 * 25 24 20 27 27 H 1.08995 * 109.46920 * 299.99936 * 1 2 3 28 28 H 1.08998 * 109.47174 * 60.00156 * 1 2 3 29 29 H 1.09001 * 109.46551 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46476 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47690 * 299.99526 * 3 2 1 32 32 H 1.08995 * 109.47438 * 60.00381 * 3 2 1 33 33 H 1.09001 * 109.46694 * 179.97438 * 4 2 1 34 34 H 1.08996 * 109.47146 * 299.99768 * 4 2 1 35 35 H 0.97000 * 120.00079 * 180.02562 * 8 7 5 36 36 H 1.09004 * 109.46520 * 179.97438 * 13 2 1 37 37 H 1.09007 * 109.46617 * 60.00576 * 13 2 1 38 38 H 0.97003 * 120.00100 * 0.02562 * 14 13 2 39 39 H 1.07993 * 119.62544 * 179.97438 * 19 18 17 40 40 H 0.97001 * 120.00485 * 0.02562 * 22 21 20 41 41 H 0.97005 * 119.99790 * 179.72347 * 22 21 20 42 42 H 1.07995 * 120.83013 * 179.70831 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5378 -0.0108 -2.4796 6 1 0.9166 0.8670 -2.3806 7 6 1.8704 -0.4823 -3.7319 8 7 2.6264 -1.5515 -3.8526 9 14 1.2472 0.3979 -5.2572 10 1 0.4219 1.5644 -4.8530 11 1 2.4019 0.8644 -6.0660 12 1 0.4220 -0.5358 -6.0650 13 6 2.0401 -0.7212 1.2494 14 7 1.5517 -0.0306 2.4454 15 6 1.8777 -0.4907 3.6696 16 8 2.5762 -1.4786 3.7811 17 6 1.3840 0.2085 4.8801 18 7 0.6207 1.2869 4.7486 19 6 0.1590 1.9398 5.7907 20 6 0.4589 1.5176 7.0893 21 6 -0.0644 2.2586 8.2588 22 7 -0.8354 3.3488 8.0757 23 8 0.2018 1.8845 9.3839 24 6 1.2646 0.3896 7.2681 25 6 1.7267 -0.2747 6.1419 26 17 2.7254 -1.6856 6.3014 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1301 -0.7208 -1.2493 34 1 1.6768 -1.7489 -1.2491 35 1 2.8608 -1.8830 -4.7335 36 1 3.1301 -0.7215 1.2491 37 1 1.6767 -1.7489 1.2493 38 1 0.9937 0.7579 2.3564 39 1 -0.4586 2.8133 5.6427 40 1 -1.0476 3.6477 7.1776 41 1 -1.1817 3.8322 8.8422 42 1 1.5177 0.0416 8.2586 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649807540.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:14 Heat of formation + Delta-G solvation = -75.069764 kcal Electronic energy + Delta-G solvation = -26342.991417 eV Core-core repulsion = 22347.702432 eV Total energy + Delta-G solvation = -3995.288985 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.14063 -40.82513 -39.80482 -38.59258 -37.73677 -35.31343 -35.02427 -34.18712 -33.57697 -32.39671 -29.14705 -28.10882 -27.92835 -26.47809 -24.97783 -24.75036 -22.58076 -21.71562 -20.26354 -19.41518 -18.96986 -18.44597 -18.28400 -17.39382 -16.82825 -16.79065 -16.58989 -16.30110 -16.08410 -15.95522 -15.40811 -15.10859 -14.73994 -14.68028 -14.59435 -14.33357 -14.15292 -13.91305 -13.71263 -13.21470 -12.87560 -12.70040 -12.56918 -12.55410 -12.31029 -12.20381 -11.93452 -11.79446 -11.51254 -11.31300 -11.17794 -11.00559 -10.84095 -10.77714 -10.54654 -10.49624 -10.38715 -10.02656 -8.11598 -6.18814 -1.13052 -0.28878 0.82383 1.18680 1.43526 1.44821 1.56288 1.88296 1.90572 2.27752 2.46536 2.53667 2.83013 3.23256 3.32351 3.44036 3.58600 3.71020 3.84623 3.99065 4.10795 4.25680 4.44823 4.59024 4.72194 4.74767 4.79742 4.94872 5.00154 5.11421 5.16102 5.37048 5.47567 5.53630 5.56098 5.60007 5.79035 5.83227 5.92880 6.16393 6.28982 6.33622 6.52733 6.96624 7.07611 7.16135 7.48763 9.01071 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.019500 B = 0.002358 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.550292 B =11869.181370 C =13108.368781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.064 4.064 3 C -0.122 4.122 4 C 0.039 3.961 5 C -0.510 4.510 6 H 0.074 0.926 7 C -0.006 4.006 8 N -0.939 5.939 9 Si 0.957 3.043 10 H -0.256 1.256 11 H -0.286 1.286 12 H -0.286 1.286 13 C 0.140 3.860 14 N -0.686 5.686 15 C 0.550 3.450 16 O -0.543 6.543 17 C 0.106 3.894 18 N -0.449 5.449 19 C 0.153 3.847 20 C -0.155 4.155 21 C 0.574 3.426 22 N -0.818 5.818 23 O -0.574 6.574 24 C -0.015 4.015 25 C -0.058 4.058 26 Cl -0.021 7.021 27 H 0.068 0.932 28 H 0.057 0.943 29 H 0.037 0.963 30 H 0.037 0.963 31 H 0.057 0.943 32 H 0.068 0.932 33 H -0.013 1.013 34 H -0.013 1.013 35 H 0.259 0.741 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.418 0.582 39 H 0.224 0.776 40 H 0.421 0.579 41 H 0.420 0.580 42 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.314 13.179 24.591 29.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.064 4.064 3 C -0.179 4.179 4 C 0.001 3.999 5 C -0.548 4.548 6 H 0.092 0.908 7 C -0.203 4.203 8 N -0.580 5.580 9 Si 0.783 3.217 10 H -0.179 1.179 11 H -0.212 1.212 12 H -0.212 1.212 13 C 0.016 3.984 14 N -0.338 5.338 15 C 0.334 3.666 16 O -0.419 6.419 17 C -0.032 4.032 18 N -0.160 5.160 19 C -0.009 4.009 20 C -0.161 4.161 21 C 0.358 3.642 22 N -0.384 5.384 23 O -0.453 6.453 24 C -0.042 4.042 25 C -0.089 4.089 26 Cl 0.008 6.992 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.006 0.994 34 H 0.006 0.994 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.258 0.742 39 H 0.240 0.760 40 H 0.254 0.746 41 H 0.254 0.746 42 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -8.588 12.159 24.286 28.486 hybrid contribution 0.118 -0.175 -0.500 0.543 sum -8.471 11.984 23.786 27.949 Atomic orbital electron populations 1.21701 0.93586 1.01003 1.01646 1.20704 0.96729 0.96303 0.92662 1.21699 0.99939 0.94649 1.01646 1.18982 0.94386 0.94261 0.92228 1.21621 1.30187 1.11990 0.90983 0.90847 1.25945 0.95761 0.95892 1.02718 1.70124 1.38905 1.25023 1.23960 0.85503 0.78013 0.78854 0.79313 1.17917 1.21187 1.21198 1.21354 0.98213 0.95571 0.83278 1.45833 1.51930 1.31876 1.04211 1.18133 0.80973 0.84018 0.83459 1.90884 1.38249 1.26329 1.86476 1.21067 0.96305 0.93726 0.92061 1.67770 1.08165 1.05046 1.34987 1.23820 0.93992 0.97996 0.85087 1.21207 1.01276 0.97604 0.96006 1.17827 0.78393 0.81010 0.87004 1.43524 1.51684 1.28531 1.14611 1.90860 1.60037 1.68657 1.25794 1.21813 0.91540 0.91898 0.98918 1.21959 0.98885 0.93681 0.94328 1.98450 1.66287 1.36681 1.97744 0.91356 0.92414 0.94363 0.94365 0.92413 0.91356 0.99423 0.99420 0.93253 0.92851 0.92856 0.74223 0.76009 0.74627 0.74639 0.81354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.01 8.05 71.99 0.58 -3.43 16 2 C -0.06 -2.34 0.54 -52.18 -0.03 -2.37 16 3 C -0.12 -4.01 8.05 71.98 0.58 -3.43 16 4 C 0.04 1.95 4.04 29.85 0.12 2.07 16 5 C -0.51 -26.84 7.65 25.60 0.20 -26.64 16 6 H 0.07 3.61 5.68 -2.91 -0.02 3.59 16 7 C -0.01 -0.36 5.46 84.66 0.46 0.10 16 8 N -0.94 -56.66 13.29 21.45 0.28 -56.38 16 9 Si 0.96 43.10 29.54 68.60 2.03 45.13 16 10 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 11 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 12 H -0.29 -12.80 7.11 99.48 0.71 -12.10 16 13 C 0.14 4.86 4.56 86.38 0.39 5.25 16 14 N -0.69 -19.31 4.95 -465.57 -2.30 -21.61 16 15 C 0.55 16.28 7.81 86.91 0.68 16.96 16 16 O -0.54 -19.51 13.92 -3.72 -0.05 -19.56 16 17 C 0.11 2.44 6.75 41.95 0.28 2.73 16 18 N -0.45 -7.46 9.52 -183.86 -1.75 -9.21 16 19 C 0.15 1.36 10.71 85.14 0.91 2.28 16 20 C -0.16 -1.87 5.89 -19.94 -0.12 -1.98 16 21 C 0.57 6.57 8.06 86.83 0.70 7.27 16 22 N -0.82 -1.31 8.83 -175.50 -1.55 -2.86 16 23 O -0.57 -11.85 17.25 -3.79 -0.07 -11.91 16 24 C -0.01 -0.25 9.51 22.75 0.22 -0.03 16 25 C -0.06 -1.27 6.36 22.65 0.14 -1.12 16 26 Cl -0.02 -0.53 26.00 -2.72 -0.07 -0.60 16 27 H 0.07 1.72 6.86 -2.39 -0.02 1.71 16 28 H 0.06 2.02 6.62 -2.39 -0.02 2.00 16 29 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 31 H 0.06 2.02 6.62 -2.39 -0.02 2.00 16 32 H 0.07 1.72 6.86 -2.39 -0.02 1.71 16 33 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 34 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 35 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 36 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 37 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 38 H 0.42 9.84 5.49 -92.71 -0.51 9.33 16 39 H 0.22 -0.46 6.41 -2.91 -0.02 -0.48 16 40 H 0.42 -2.22 6.89 -92.71 -0.64 -2.86 16 41 H 0.42 -0.11 8.93 -92.70 -0.83 -0.94 16 42 H 0.17 2.67 7.72 -2.91 -0.02 2.65 16 Total: -1.00 -76.39 363.29 0.78 -75.61 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -0.86 Total: 3.75 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: 5.12 Total: -2.35 kcal Atomic # 7 Polarization: -84.75 SS G_CDS: -5.32 Total: -90.07 kcal Atomic # 8 Polarization: -31.35 SS G_CDS: -0.12 Total: -31.47 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -0.07 Total: -0.60 kcal Total: -76.39 0.78 -75.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649807540.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.539 kcal (2) G-P(sol) polarization free energy of solvation -76.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds