Wall clock time and date at job start Tue Mar 31 2020 22:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 119.99944 * 2 1 4 4 H 1.48501 * 109.47483 * 269.99770 * 3 2 1 5 5 H 1.48494 * 109.47201 * 29.99932 * 3 2 1 6 6 H 1.48507 * 109.46904 * 150.00107 * 3 2 1 7 7 C 1.38942 * 120.00042 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00163 * 0.02562 * 7 2 1 9 9 N 1.37101 * 120.00412 * 180.02562 * 7 2 1 10 10 C 1.34777 * 120.00327 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99756 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99928 * 180.27606 * 10 9 7 13 13 N 1.46491 * 109.46957 * 179.72354 * 12 10 9 14 14 C 1.35704 * 119.80041 * 269.71885 * 13 12 10 15 15 N 1.30372 * 122.16733 * 179.75580 * 14 13 12 16 16 C 1.34005 * 121.24165 * 0.51364 * 15 14 13 17 17 C 1.39841 * 119.60195 * 359.76215 * 16 15 14 18 18 N 1.35344 * 107.33858 * 180.02562 * 17 16 15 19 19 C 1.30193 * 109.37822 * 0.02562 * 18 17 16 20 20 N 1.36506 * 109.75911 * 359.97438 * 19 18 17 21 21 C 1.40180 * 126.28670 * 180.02562 * 20 19 18 22 22 C 1.38825 * 120.06654 * 129.69859 * 21 20 19 23 23 C 1.38121 * 119.93391 * 179.78657 * 22 21 20 24 24 C 1.38280 * 120.06670 * 0.47288 * 23 22 21 25 25 C 1.38279 * 120.12982 * 359.77904 * 24 23 22 26 26 C 1.38124 * 120.06454 * 359.97438 * 25 24 23 27 27 C 1.35174 * 119.80545 * 89.99649 * 13 12 10 28 28 O 1.21896 * 120.90534 * 0.02562 * 27 13 12 29 29 H 0.97005 * 120.00014 * 0.02562 * 1 2 3 30 30 H 0.97000 * 119.99355 * 359.97438 * 9 7 2 31 31 H 1.09004 * 109.46965 * 299.72211 * 12 10 9 32 32 H 1.08994 * 109.46990 * 59.72065 * 12 10 9 33 33 H 1.07997 * 118.91689 * 0.02898 * 14 13 12 34 34 H 1.07999 * 125.12016 * 179.97438 * 19 18 17 35 35 H 1.08005 * 120.03570 * 0.02562 * 22 21 20 36 36 H 1.08005 * 119.96744 * 180.22834 * 23 22 21 37 37 H 1.07993 * 119.93548 * 179.76476 * 24 23 22 38 38 H 1.07997 * 119.96565 * 179.97438 * 25 24 23 39 39 H 1.08007 * 120.02921 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0465 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4401 0.7001 7 6 2.0088 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0014 9 7 3.3798 -1.2034 0.0000 10 6 4.0537 -2.3706 -0.0011 11 8 3.4472 -3.4210 -0.0020 12 6 5.5607 -2.3706 0.0058 13 7 6.0490 -3.7517 0.0098 14 6 6.2738 -4.3841 1.1893 15 7 6.7035 -5.6136 1.2467 16 6 6.9556 -6.3146 0.1327 17 6 6.7507 -5.7221 -1.1173 18 7 7.0780 -6.6396 -2.0570 19 6 7.4632 -7.7376 -1.4730 20 7 7.4046 -7.5845 -0.1178 21 6 7.7421 -8.5494 0.8414 22 6 8.6047 -8.2257 1.8799 23 6 8.9319 -9.1773 2.8260 24 6 8.4090 -10.4541 2.7341 25 6 7.5537 -10.7809 1.6979 26 6 7.2188 -9.8321 0.7517 27 6 6.2782 -4.3867 -1.1612 28 8 6.0847 -3.8257 -2.2260 29 1 -0.4850 0.8401 -0.0004 30 1 3.8648 -0.3633 0.0004 31 1 5.9281 -1.8579 -0.8832 32 1 5.9199 -1.8556 0.8967 33 1 6.0865 -3.8529 2.1107 34 1 7.7812 -8.6344 -1.9838 35 1 9.0165 -7.2297 1.9502 36 1 9.6001 -8.9250 3.6363 37 1 8.6693 -11.1975 3.4729 38 1 7.1471 -11.7791 1.6285 39 1 6.5503 -10.0879 -0.0572 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001652010870.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:43 Heat of formation + Delta-G solvation = 45.881942 kcal Electronic energy + Delta-G solvation = -27865.094463 eV Core-core repulsion = 23773.942844 eV Total energy + Delta-G solvation = -4091.151619 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.99379 -41.97743 -40.19600 -39.79852 -38.70834 -36.21733 -35.42244 -35.31529 -33.83676 -32.05332 -30.87080 -30.69450 -29.73568 -26.74393 -25.70711 -24.97962 -24.26398 -23.39796 -21.86756 -21.54538 -20.60194 -20.34636 -19.45818 -18.47773 -18.28914 -17.68091 -17.41711 -17.00130 -16.73644 -16.28774 -16.12756 -15.96142 -15.64648 -15.36462 -15.20308 -15.13455 -14.97574 -14.59396 -14.44415 -14.28181 -13.96752 -13.78941 -13.39147 -12.92679 -12.80623 -12.43425 -12.29830 -12.23360 -12.00462 -11.78422 -11.67533 -11.57420 -11.31963 -10.79843 -10.49720 -10.32276 -10.01629 -9.67841 -9.24784 -8.44675 -6.07887 -0.55324 0.18837 0.33333 0.46955 1.01572 1.21707 1.30916 1.37516 1.46962 1.54451 1.80094 2.23018 2.40676 2.67102 2.82694 2.85320 3.01930 3.11948 3.48944 3.65461 3.75047 3.84822 3.89978 4.05134 4.07920 4.20987 4.25883 4.27931 4.41609 4.47374 4.63895 4.86604 4.99989 5.13100 5.26512 5.35990 5.41860 5.48791 5.49955 5.72990 5.87356 5.99341 6.38001 6.50022 6.58333 6.68698 6.80007 7.28301 7.82252 8.72456 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.022075 B = 0.002492 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.087742 B =11233.074613 C =11621.171046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.013 4.013 3 Si 0.965 3.035 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.215 1.215 7 C -0.332 4.332 8 H 0.052 0.948 9 N -0.573 5.573 10 C 0.432 3.568 11 O -0.623 6.623 12 C 0.090 3.910 13 N -0.511 5.511 14 C 0.414 3.586 15 N -0.527 5.527 16 C 0.268 3.732 17 C -0.147 4.147 18 N -0.472 5.472 19 C 0.238 3.762 20 N -0.404 5.404 21 C 0.086 3.914 22 C -0.109 4.109 23 C -0.104 4.104 24 C -0.105 4.105 25 C -0.104 4.104 26 C -0.119 4.119 27 C 0.565 3.435 28 O -0.558 6.558 29 H 0.281 0.719 30 H 0.395 0.605 31 H 0.130 0.870 32 H 0.193 0.807 33 H 0.269 0.731 34 H 0.270 0.730 35 H 0.121 0.879 36 H 0.156 0.844 37 H 0.160 0.840 38 H 0.160 0.840 39 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.006 -15.806 10.659 31.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.212 4.212 3 Si 0.784 3.216 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.137 1.137 7 C -0.461 4.461 8 H 0.070 0.930 9 N -0.214 5.214 10 C 0.219 3.781 11 O -0.509 6.509 12 C -0.035 4.035 13 N -0.230 5.230 14 C 0.129 3.871 15 N -0.252 5.252 16 C 0.039 3.961 17 C -0.274 4.274 18 N -0.189 5.189 19 C -0.045 4.045 20 N -0.087 5.087 21 C -0.003 4.003 22 C -0.128 4.128 23 C -0.123 4.123 24 C -0.123 4.123 25 C -0.122 4.122 26 C -0.138 4.138 27 C 0.362 3.638 28 O -0.436 6.436 29 H 0.090 0.910 30 H 0.232 0.768 31 H 0.148 0.852 32 H 0.210 0.790 33 H 0.284 0.716 34 H 0.285 0.715 35 H 0.139 0.861 36 H 0.174 0.826 37 H 0.178 0.822 38 H 0.177 0.823 39 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 24.444 -16.495 9.759 31.061 hybrid contribution -0.824 1.220 -0.602 1.591 sum 23.619 -15.274 9.157 29.581 Atomic orbital electron populations 1.69808 1.08377 1.29529 1.49355 1.26199 0.96496 1.03002 0.95539 0.85379 0.80177 0.76231 0.79859 1.18906 1.19871 1.13699 1.18953 0.81295 0.94918 1.50915 0.93012 1.41853 1.05862 1.07379 1.66326 1.20978 0.90787 0.83825 0.82521 1.90614 1.71192 1.33012 1.56087 1.21996 0.90106 0.80725 1.10644 1.46172 1.53946 1.15929 1.06943 1.25953 0.83818 0.86945 0.90418 1.67289 1.25059 1.06027 1.26828 1.19130 0.98294 0.87622 0.91022 1.20345 1.18166 0.97072 0.91825 1.70010 1.15934 1.00399 1.32520 1.26401 1.01051 0.99724 0.77307 1.42647 1.49729 1.08327 1.07970 1.18027 1.01179 0.88760 0.92333 1.21174 0.96471 1.00848 0.94303 1.21398 0.99870 0.92802 0.98180 1.21744 0.95535 0.96877 0.98144 1.21427 0.97379 1.00037 0.93335 1.21294 0.99738 0.91324 1.01459 1.16222 0.78237 0.85497 0.83877 1.90861 1.54063 1.68862 1.29827 0.90961 0.76804 0.85221 0.78994 0.71613 0.71451 0.86068 0.82635 0.82202 0.82278 0.84443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.70 13.96 21.66 0.30 -55.40 16 2 C -0.01 -0.71 5.50 84.92 0.47 -0.24 16 3 Si 0.96 37.15 27.74 68.60 1.90 39.05 16 4 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 5 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 6 H -0.21 -6.40 6.52 99.48 0.65 -5.75 16 7 C -0.33 -19.12 10.16 84.04 0.85 -18.27 16 8 H 0.05 3.62 7.39 -2.91 -0.02 3.59 16 9 N -0.57 -25.77 5.09 -306.98 -1.56 -27.33 16 10 C 0.43 18.75 7.85 87.66 0.69 19.44 16 11 O -0.62 -34.74 16.01 -3.07 -0.05 -34.78 16 12 C 0.09 2.51 5.85 85.64 0.50 3.01 16 13 N -0.51 -16.15 2.09 -657.63 -1.37 -17.52 16 14 C 0.41 10.09 11.47 180.09 2.06 12.15 16 15 N -0.53 -14.72 10.42 -196.00 -2.04 -16.76 16 16 C 0.27 8.54 7.73 133.42 1.03 9.57 16 17 C -0.15 -5.68 7.23 39.85 0.29 -5.39 16 18 N -0.47 -17.08 11.28 -190.87 -2.15 -19.23 16 19 C 0.24 5.94 12.23 179.88 2.20 8.14 16 20 N -0.40 -10.37 2.89 -348.20 -1.01 -11.37 16 21 C 0.09 1.70 6.01 38.09 0.23 1.93 16 22 C -0.11 -1.83 9.69 22.38 0.22 -1.62 16 23 C -0.10 -1.12 10.04 22.25 0.22 -0.90 16 24 C -0.11 -0.86 10.04 22.29 0.22 -0.64 16 25 C -0.10 -1.00 10.04 22.25 0.22 -0.77 16 26 C -0.12 -1.75 9.69 22.38 0.22 -1.53 16 27 C 0.57 23.37 7.48 85.04 0.64 24.01 16 28 O -0.56 -27.39 16.79 -4.98 -0.08 -27.47 16 29 H 0.28 15.31 8.31 -92.70 -0.77 14.54 16 30 H 0.40 14.03 5.76 -92.71 -0.53 13.49 16 31 H 0.13 3.50 7.45 -2.38 -0.02 3.48 16 32 H 0.19 2.44 8.00 -2.39 -0.02 2.42 16 33 H 0.27 3.16 8.01 -2.91 -0.02 3.14 16 34 H 0.27 3.48 8.06 -2.91 -0.02 3.45 16 35 H 0.12 2.21 8.06 -2.91 -0.02 2.19 16 36 H 0.16 0.89 8.06 -2.91 -0.02 0.86 16 37 H 0.16 0.34 8.06 -2.91 -0.02 0.32 16 38 H 0.16 0.67 8.06 -2.91 -0.02 0.65 16 39 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 Total: -1.00 -101.41 351.26 4.54 -96.88 By element: Atomic # 1 Polarization: 24.52 SS G_CDS: 0.54 Total: 25.06 kcal Atomic # 6 Polarization: 38.82 SS G_CDS: 10.06 Total: 48.88 kcal Atomic # 7 Polarization: -139.78 SS G_CDS: -7.83 Total: -147.61 kcal Atomic # 8 Polarization: -62.12 SS G_CDS: -0.13 Total: -62.25 kcal Atomic # 14 Polarization: 37.15 SS G_CDS: 1.90 Total: 39.05 kcal Total: -101.41 4.54 -96.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001652010870.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.760 kcal (2) G-P(sol) polarization free energy of solvation -101.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds