Wall clock time and date at job start Tue Mar 31 2020 22:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43193 * 179.97438 * 2 1 4 4 C 1.40352 * 120.48437 * 47.94392 * 3 2 1 5 5 C 1.36885 * 118.49341 * 179.97438 * 4 3 2 6 6 C 1.39366 * 119.38379 * 359.97438 * 5 4 3 7 7 N 1.38589 * 119.53267 * 180.02562 * 6 5 4 8 8 N 1.40095 * 119.99911 * 179.97438 * 7 6 5 9 9 C 1.34778 * 120.00333 * 180.02562 * 8 7 6 10 10 O 1.21586 * 120.00540 * 179.97438 * 9 8 7 11 11 N 1.34782 * 119.99707 * 0.02562 * 9 8 7 12 12 C 1.39937 * 120.00099 * 175.47203 * 11 9 8 13 13 C 1.38960 * 120.03709 * 214.85427 * 12 11 9 14 14 C 1.38155 * 120.06820 * 179.74438 * 13 12 11 15 15 C 1.38172 * 120.13845 * 0.55545 * 14 13 12 16 16 C 1.38909 * 120.06879 * 359.69970 * 15 14 13 17 17 O 1.35753 * 120.03705 * 179.97438 * 16 15 14 18 18 C 1.34831 * 116.99660 * 5.37712 * 17 16 15 19 19 H 1.08005 * 120.00118 * 354.96506 * 18 17 16 20 20 C 1.38656 * 120.00126 * 174.96170 * 18 17 16 21 21 N 1.31561 * 119.99616 * 359.97438 * 20 18 17 22 22 Si 1.86792 * 120.00231 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47359 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47384 * 120.00117 * 22 20 18 25 25 H 1.48502 * 109.47257 * 239.99817 * 22 20 18 26 26 C 1.38709 * 120.03547 * 35.13402 * 12 11 9 27 27 N 1.32561 * 120.93269 * 0.02562 * 6 5 4 28 28 C 1.31710 * 121.64239 * 359.97438 * 27 6 5 29 29 H 1.08008 * 120.75451 * 0.24702 * 4 3 2 30 30 H 1.08004 * 120.31106 * 179.97438 * 5 4 3 31 31 H 0.97006 * 120.00048 * 0.02562 * 7 6 5 32 32 H 0.97010 * 120.00190 * 0.02562 * 8 7 6 33 33 H 0.97003 * 119.99555 * 355.46920 * 11 9 8 34 34 H 1.07996 * 119.96273 * 0.02833 * 13 12 11 35 35 H 1.07998 * 119.93464 * 180.27882 * 14 13 12 36 36 H 1.08002 * 119.96914 * 179.71936 * 15 14 13 37 37 H 0.97000 * 119.99740 * 179.97438 * 21 20 18 38 38 H 1.08002 * 120.06574 * 359.94913 * 26 12 11 39 39 H 1.08005 * 119.74514 * 180.02562 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2803 -0.8092 -0.8980 5 6 4.6484 -0.7764 -0.8631 6 6 5.2892 0.0536 0.0549 7 7 6.6741 0.0897 0.0926 8 7 7.3284 0.9208 1.0112 9 6 8.6752 0.9564 1.0476 10 8 9.2431 1.6781 1.8444 11 7 9.3926 0.1926 0.1998 12 6 10.7876 0.2992 0.1719 13 6 11.4726 0.1521 -1.0281 14 6 12.8494 0.2624 -1.0573 15 6 13.5506 0.5077 0.1077 16 6 12.8721 0.6504 1.3114 17 8 13.5617 0.8909 2.4558 18 6 14.8900 1.0907 2.3394 19 1 15.3715 0.9752 1.3795 20 6 15.6380 1.4444 3.4521 21 7 15.0514 1.5856 4.6212 22 14 17.4782 1.7218 3.2908 23 1 17.8902 1.5024 1.8810 24 1 17.8060 3.1135 3.6919 25 1 18.2014 0.7696 4.1713 26 6 11.4887 0.5459 1.3431 27 7 4.5928 0.8090 0.8926 28 6 3.2757 0.8075 0.8924 29 1 2.7609 -1.4407 -1.6037 30 1 5.2258 -1.3879 -1.5406 31 1 7.1904 -0.4600 -0.5175 32 1 6.8121 1.4709 1.6211 33 1 8.9418 -0.4309 -0.3909 34 1 10.9277 -0.0440 -1.9397 35 1 13.3792 0.1522 -1.9919 36 1 14.6273 0.5889 0.0825 37 1 15.5748 1.8326 5.3996 38 1 10.9588 0.6569 2.2777 39 1 2.7390 1.4355 1.5881 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001658314184.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:55 Heat of formation + Delta-G solvation = 72.527731 kcal Electronic energy + Delta-G solvation = -26405.431734 eV Core-core repulsion = 22315.435563 eV Total energy + Delta-G solvation = -4089.996171 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.01403 -41.30864 -40.43448 -38.44170 -37.96944 -37.18980 -35.53962 -34.23479 -33.62118 -33.40434 -31.12195 -30.20335 -29.66021 -27.31382 -25.23480 -24.60639 -24.11844 -23.21462 -22.04194 -20.53474 -20.02588 -19.93912 -19.47699 -18.90618 -17.66845 -17.13021 -16.93187 -16.70355 -16.51030 -16.22966 -15.91029 -15.75445 -15.49433 -15.41310 -15.34047 -14.90230 -14.60932 -14.39604 -14.22521 -14.14242 -13.92630 -13.59156 -13.26364 -13.16806 -12.96824 -12.88204 -12.68777 -12.35346 -12.06801 -11.76094 -11.37042 -11.02590 -10.95108 -10.76404 -10.63830 -10.55735 -9.34060 -8.90258 -8.59360 -8.44189 -6.13588 -0.22983 0.35104 0.45315 0.74366 0.77399 1.36384 1.45616 1.55894 1.67142 1.72065 1.83756 2.05024 2.20446 2.85922 2.88509 2.96194 3.13287 3.20594 3.53549 3.80069 3.90899 4.03254 4.18692 4.33983 4.40899 4.45054 4.67002 4.75560 4.78057 4.90213 5.01642 5.07076 5.14038 5.19014 5.35641 5.44947 5.56248 5.67506 5.78013 5.87462 6.06317 6.15589 6.24452 6.52057 6.73761 6.99750 7.10581 7.28378 7.83301 8.79814 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.030363 B = 0.001788 C = 0.001701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.943009 B =15654.839422 C =16454.250147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C 0.292 3.708 3 C -0.152 4.152 4 C 0.028 3.972 5 C -0.210 4.210 6 C 0.417 3.583 7 N -0.504 5.504 8 N -0.516 5.516 9 C 0.705 3.295 10 O -0.600 6.600 11 N -0.658 5.658 12 C 0.198 3.802 13 C -0.198 4.198 14 C -0.048 4.048 15 C -0.254 4.254 16 C 0.125 3.875 17 O -0.237 6.237 18 C -0.412 4.412 19 H 0.108 0.892 20 C -0.029 4.029 21 N -0.925 5.925 22 Si 1.023 2.977 23 H -0.246 1.246 24 H -0.272 1.272 25 H -0.269 1.269 26 C -0.212 4.212 27 N -0.570 5.570 28 C 0.210 3.790 29 H 0.175 0.825 30 H 0.185 0.815 31 H 0.447 0.553 32 H 0.445 0.555 33 H 0.423 0.577 34 H 0.170 0.830 35 H 0.161 0.839 36 H 0.122 0.878 37 H 0.271 0.729 38 H 0.101 0.899 39 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.865 -8.107 -18.818 28.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.155 5.155 2 C -0.022 4.022 3 C -0.161 4.161 4 C 0.001 3.999 5 C -0.236 4.236 6 C 0.180 3.820 7 N -0.237 5.237 8 N -0.269 5.269 9 C 0.405 3.595 10 O -0.474 6.474 11 N -0.310 5.310 12 C 0.103 3.897 13 C -0.218 4.218 14 C -0.066 4.066 15 C -0.274 4.274 16 C 0.074 3.926 17 O -0.143 6.143 18 C -0.488 4.488 19 H 0.125 0.875 20 C -0.225 4.225 21 N -0.563 5.563 22 Si 0.842 3.158 23 H -0.169 1.169 24 H -0.197 1.197 25 H -0.194 1.194 26 C -0.234 4.234 27 N -0.289 5.289 28 C 0.049 3.951 29 H 0.192 0.808 30 H 0.202 0.798 31 H 0.294 0.706 32 H 0.292 0.708 33 H 0.264 0.736 34 H 0.187 0.813 35 H 0.179 0.821 36 H 0.140 0.860 37 H 0.080 0.920 38 H 0.119 0.881 39 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -20.577 -6.955 -17.189 27.699 hybrid contribution 0.462 -0.278 0.215 0.581 sum -20.115 -7.233 -16.974 27.295 Atomic orbital electron populations 1.81330 1.13550 1.10471 1.10126 1.25539 0.92315 0.92139 0.92216 1.16765 0.84431 1.08551 1.06402 1.21373 0.92976 0.92254 0.93319 1.21173 0.94957 1.04366 1.03064 1.18728 0.82776 0.90164 0.90308 1.43234 1.01160 1.43821 1.35503 1.44357 1.01361 1.44526 1.36677 1.15843 0.80722 0.81166 0.81786 1.91138 1.67492 1.46390 1.42417 1.42078 1.04207 1.42703 1.41979 1.17021 0.81193 0.98938 0.92569 1.20874 0.94278 1.10834 0.95858 1.21043 0.93823 0.94592 0.97176 1.21350 1.00897 1.12206 0.92940 1.19691 0.91923 0.93742 0.87268 1.83960 1.22413 1.79360 1.28616 1.21955 0.80179 1.48596 0.98032 0.87489 1.26704 1.06239 0.95896 0.93700 1.70236 1.38767 1.46724 1.00602 0.84468 0.73214 0.78287 0.79803 1.16859 1.19678 1.19379 1.20213 0.91011 1.13129 0.99059 1.67168 1.09323 1.25904 1.26456 1.22769 0.87449 0.91934 0.92988 0.80752 0.79768 0.70579 0.70794 0.73641 0.81266 0.82102 0.86027 0.91984 0.88065 0.80398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -9.25 18.54 19.00 0.35 -8.89 16 2 C 0.29 3.79 15.37 88.33 1.36 5.15 16 3 C -0.15 -1.19 5.75 -21.20 -0.12 -1.31 16 4 C 0.03 0.08 9.85 22.47 0.22 0.30 16 5 C -0.21 -0.43 9.86 22.22 0.22 -0.21 16 6 C 0.42 3.72 7.58 133.21 1.01 4.73 16 7 N -0.50 -4.81 6.40 -55.46 -0.35 -5.16 16 8 N -0.52 -9.91 6.29 -184.74 -1.16 -11.07 16 9 C 0.71 19.97 8.52 179.05 1.53 21.49 16 10 O -0.60 -25.13 14.62 -3.99 -0.06 -25.18 16 11 N -0.66 -15.04 5.30 -317.23 -1.68 -16.72 16 12 C 0.20 6.45 6.30 38.13 0.24 6.69 16 13 C -0.20 -5.10 9.96 22.42 0.22 -4.88 16 14 C -0.05 -1.43 10.03 22.23 0.22 -1.21 16 15 C -0.25 -10.68 9.17 22.41 0.21 -10.48 16 16 C 0.12 6.44 6.64 22.56 0.15 6.59 16 17 O -0.24 -14.96 9.76 -22.78 -0.22 -15.18 16 18 C -0.41 -24.52 9.49 67.92 0.64 -23.88 16 19 H 0.11 5.72 5.20 -2.91 -0.02 5.71 16 20 C -0.03 -1.67 5.49 84.83 0.47 -1.21 16 21 N -0.92 -59.02 13.67 21.61 0.30 -58.73 16 22 Si 1.02 43.59 29.55 68.60 2.03 45.62 16 23 H -0.25 -9.43 7.11 99.48 0.71 -8.72 16 24 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 25 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 26 C -0.21 -9.83 8.64 22.51 0.19 -9.64 16 27 N -0.57 -7.25 9.34 -192.23 -1.79 -9.04 16 28 C 0.21 1.99 10.92 85.03 0.93 2.92 16 29 H 0.18 -0.44 8.06 -2.91 -0.02 -0.47 16 30 H 0.19 -1.00 8.06 -2.91 -0.02 -1.02 16 31 H 0.45 1.17 6.70 -213.32 -1.43 -0.26 16 32 H 0.45 9.23 8.03 -213.31 -1.71 7.52 16 33 H 0.42 4.68 6.75 -92.71 -0.63 4.05 16 34 H 0.17 2.47 8.06 -2.91 -0.02 2.45 16 35 H 0.16 3.34 8.06 -2.91 -0.02 3.32 16 36 H 0.12 5.17 5.63 -2.91 -0.02 5.15 16 37 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 38 H 0.10 5.34 6.22 -2.91 -0.02 5.33 16 39 H 0.18 1.14 8.06 -2.91 -0.02 1.12 16 Total: -1.00 -93.17 355.47 2.31 -90.86 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: -2.58 Total: 18.46 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: 7.49 Total: -4.95 kcal Atomic # 7 Polarization: -105.27 SS G_CDS: -4.34 Total: -109.62 kcal Atomic # 8 Polarization: -40.09 SS G_CDS: -0.28 Total: -40.37 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -93.17 2.31 -90.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658314184.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.390 kcal (2) G-P(sol) polarization free energy of solvation -93.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds