Wall clock time and date at job start Tue Mar 31 2020 22:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86794 * 120.00210 * 2 1 4 4 H 1.48495 * 109.47407 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.46997 * 120.00340 * 3 2 1 6 6 H 1.48502 * 109.46960 * 240.00135 * 3 2 1 7 7 C 1.38812 * 119.99502 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99919 * 179.97438 * 7 2 1 9 9 N 1.36941 * 120.00144 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99839 * 174.11462 * 9 7 2 11 11 C 1.52993 * 109.54284 * 62.24901 * 10 9 7 12 12 N 1.46503 * 109.46921 * 54.84997 * 11 10 9 13 13 C 1.34785 * 119.99719 * 176.63075 * 12 11 10 14 14 O 1.21551 * 120.00124 * 359.97438 * 13 12 11 15 15 C 1.47842 * 119.99674 * 179.97438 * 13 12 11 16 16 C 1.39563 * 120.55718 * 359.72171 * 15 13 12 17 17 N 1.31658 * 120.59787 * 179.72592 * 16 15 13 18 18 C 1.31947 * 121.89250 * 0.58946 * 17 16 15 19 19 C 1.38424 * 121.06229 * 359.67436 * 18 17 16 20 20 Cl 1.73603 * 120.36238 * 180.02562 * 19 18 17 21 21 C 1.38516 * 119.28046 * 0.02658 * 19 18 17 22 22 C 1.53181 * 109.54326 * 301.98273 * 10 9 7 23 23 C 1.53092 * 109.16494 * 297.11495 * 22 10 9 24 24 O 1.42910 * 109.41187 * 302.39374 * 23 22 10 25 25 C 1.42899 * 114.09944 * 61.15628 * 24 23 22 26 26 C 1.53090 * 109.41543 * 298.84172 * 25 24 23 27 27 H 0.96998 * 119.99548 * 359.97438 * 1 2 3 28 28 H 0.96996 * 120.00361 * 354.12297 * 9 7 2 29 29 H 1.09008 * 109.47163 * 174.84657 * 11 10 9 30 30 H 1.09000 * 109.47345 * 294.84639 * 11 10 9 31 31 H 0.96993 * 120.00002 * 356.62819 * 12 11 10 32 32 H 1.07999 * 119.69792 * 0.02562 * 16 15 13 33 33 H 1.07998 * 119.46881 * 179.69781 * 18 17 16 34 34 H 1.08000 * 120.86774 * 180.02562 * 21 19 18 35 35 H 1.08997 * 109.52307 * 57.02041 * 22 10 9 36 36 H 1.09005 * 109.52291 * 177.20840 * 22 10 9 37 37 H 1.08998 * 109.48379 * 182.40814 * 23 22 10 38 38 H 1.08996 * 109.48899 * 62.37918 * 23 22 10 39 39 H 1.09001 * 109.47803 * 178.85488 * 25 24 23 40 40 H 1.09002 * 109.48645 * 58.83155 * 25 24 23 41 41 H 1.08995 * 109.52069 * 297.70188 * 26 25 24 42 42 H 1.09006 * 109.57011 * 177.54470 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 1.2854 2.7464 0.0006 5 1 3.1040 1.6962 1.2125 6 1 3.1039 1.6963 -1.2125 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0520 -3.6535 -0.1312 11 6 2.9995 -3.8247 1.0578 12 7 2.2418 -3.7102 2.3064 13 6 2.8604 -3.8957 3.4894 14 8 4.0468 -4.1584 3.5203 15 6 2.0959 -3.7796 4.7495 16 6 0.7346 -3.4727 4.7278 17 7 0.0518 -3.3744 5.8492 18 6 0.6187 -3.5479 7.0280 19 6 1.9654 -3.8496 7.1355 20 17 2.6924 -4.0746 8.6958 21 6 2.7266 -3.9699 5.9845 22 6 2.8574 -3.6498 -1.4342 23 6 1.8939 -3.5561 -2.6203 24 8 0.9747 -4.6493 -2.5730 25 6 0.1611 -4.6772 -1.3986 26 6 1.0550 -4.8159 -0.1635 27 1 -0.4849 0.8401 0.0004 28 1 0.3593 -2.3903 0.0858 29 1 3.4715 -4.8061 1.0079 30 1 3.7663 -3.0507 1.0257 31 1 1.2950 -3.5009 2.2817 32 1 0.2357 -3.3193 3.7823 33 1 0.0223 -3.4533 7.9234 34 1 3.7793 -4.2049 6.0385 35 1 3.5310 -2.7929 -1.4436 36 1 3.4365 -4.5704 -1.5072 37 1 2.4589 -3.5961 -3.5516 38 1 1.3441 -2.6164 -2.5688 39 1 -0.5222 -5.5249 -1.4499 40 1 -0.4115 -3.7522 -1.3309 41 1 1.5976 -5.7600 -0.2108 42 1 0.4403 -4.7937 0.7365 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671949086.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:34 Heat of formation + Delta-G solvation = -40.159799 kcal Electronic energy + Delta-G solvation = -27625.493284 eV Core-core repulsion = 23631.718109 eV Total energy + Delta-G solvation = -3993.775175 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.75811 -39.56421 -38.61503 -36.92335 -35.91431 -33.72483 -32.74310 -32.36488 -31.29220 -30.68750 -29.24545 -27.14446 -24.65386 -24.12468 -23.79334 -23.05103 -22.06748 -20.47085 -18.85511 -18.17368 -17.29506 -17.10369 -16.76496 -15.76950 -15.60088 -15.50950 -15.27150 -15.11353 -14.70634 -14.35369 -14.23016 -13.84245 -13.74187 -13.48126 -13.20106 -12.85724 -12.68600 -12.38872 -12.26079 -12.09604 -11.81002 -11.55821 -11.49850 -10.96101 -10.94333 -10.83980 -10.44326 -10.32968 -10.07556 -10.06367 -9.81926 -9.76348 -9.57707 -9.28073 -9.26536 -8.84638 -8.66637 -7.18378 -5.93504 -3.24888 0.35586 0.77240 1.68077 2.82673 3.32685 3.34726 3.40337 3.41855 3.63793 4.06467 4.34806 4.39783 4.45243 4.55580 4.67292 4.85749 5.06479 5.13538 5.18738 5.29932 5.45100 5.49573 5.58125 5.59809 5.71630 5.73510 5.94260 6.02105 6.05052 6.08308 6.14328 6.25312 6.36406 6.46067 6.48641 6.65993 6.72297 6.80423 7.48632 7.58047 7.68700 7.75577 8.23304 8.36612 9.36251 9.85280 10.22091 11.27746 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.011363 B = 0.003485 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2463.470645 B = 8032.933516 C = 9242.090294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.002 4.002 3 Si 0.901 3.099 4 H -0.291 1.291 5 H -0.287 1.287 6 H -0.285 1.285 7 C -0.242 4.242 8 H 0.070 0.930 9 N -0.713 5.713 10 C 0.189 3.811 11 C 0.117 3.883 12 N -0.690 5.690 13 C 0.557 3.443 14 O -0.545 6.545 15 C -0.165 4.165 16 C 0.143 3.857 17 N -0.468 5.468 18 C 0.131 3.869 19 C -0.100 4.100 20 Cl -0.052 7.052 21 C -0.011 4.011 22 C -0.152 4.152 23 C 0.070 3.930 24 O -0.393 6.393 25 C 0.066 3.934 26 C -0.152 4.152 27 H 0.257 0.743 28 H 0.385 0.615 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.403 0.597 32 H 0.171 0.829 33 H 0.169 0.831 34 H 0.157 0.843 35 H 0.078 0.922 36 H 0.055 0.945 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.060 0.940 41 H 0.070 0.930 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.820 -10.330 9.026 13.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.732 3.268 4 H -0.217 1.217 5 H -0.213 1.213 6 H -0.212 1.212 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.356 5.356 10 C 0.096 3.904 11 C -0.009 4.009 12 N -0.339 5.339 13 C 0.342 3.658 14 O -0.424 6.424 15 C -0.170 4.170 16 C -0.015 4.015 17 N -0.176 5.176 18 C -0.026 4.026 19 C -0.129 4.129 20 Cl -0.023 7.023 21 C -0.038 4.038 22 C -0.192 4.192 23 C -0.007 4.007 24 O -0.312 6.312 25 C -0.011 4.011 26 C -0.190 4.190 27 H 0.067 0.933 28 H 0.220 0.780 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.240 0.760 32 H 0.188 0.812 33 H 0.186 0.814 34 H 0.175 0.825 35 H 0.096 0.904 36 H 0.074 0.926 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.100 0.900 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.901 -10.307 8.932 13.668 hybrid contribution 0.807 1.258 0.503 1.577 sum 1.708 -9.049 9.435 13.184 Atomic orbital electron populations 1.69624 1.05002 1.26022 1.56801 1.24690 0.95397 0.97526 1.02299 0.86368 0.78680 0.83788 0.77933 1.21712 1.21340 1.21170 1.19002 0.90962 0.83600 1.43684 0.91217 1.42496 1.06197 0.99494 1.87374 1.19836 0.91335 0.87442 0.91751 1.21915 0.95157 1.00542 0.83286 1.45676 1.13917 1.69126 1.05221 1.17824 0.86748 0.77980 0.83220 1.90759 1.14940 1.49388 1.87322 1.21139 0.95653 1.05442 0.94782 1.23264 0.90100 0.90607 0.97521 1.67894 1.38345 1.13499 0.97830 1.23023 0.90388 0.92477 0.96748 1.21996 0.95199 1.07681 0.88022 1.98388 1.83056 1.95513 1.25348 1.21651 1.01286 0.91630 0.89278 1.22444 0.98932 1.01599 0.96228 1.22453 0.90828 0.90287 0.97097 1.87801 1.52594 1.49695 1.41111 1.22459 0.92408 1.01705 0.84536 1.22362 0.98969 0.98689 0.98972 0.93318 0.78030 0.92307 0.91256 0.76018 0.81244 0.81399 0.82517 0.90384 0.92599 0.90368 0.91186 0.90041 0.92134 0.91141 0.91363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.01 13.07 55.49 0.73 -24.28 16 2 C 0.00 -0.06 5.50 -17.43 -0.10 -0.15 16 3 Si 0.90 21.08 29.55 -169.99 -5.02 16.05 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.24 -5.73 8.67 -15.06 -0.13 -5.86 16 8 H 0.07 1.67 6.78 -52.48 -0.36 1.32 16 9 N -0.71 -14.39 3.61 -47.06 -0.17 -14.56 16 10 C 0.19 3.11 0.41 -131.64 -0.05 3.06 16 11 C 0.12 1.94 4.38 -4.04 -0.02 1.92 16 12 N -0.69 -10.81 5.08 -61.25 -0.31 -11.12 16 13 C 0.56 9.04 7.78 -12.33 -0.10 8.94 16 14 O -0.54 -10.35 16.42 5.32 0.09 -10.26 16 15 C -0.16 -2.27 5.89 -104.82 -0.62 -2.89 16 16 C 0.14 1.86 10.71 -17.13 -0.18 1.67 16 17 N -0.47 -5.97 10.34 -12.88 -0.13 -6.10 16 18 C 0.13 1.42 10.97 -17.43 -0.19 1.22 16 19 C -0.10 -1.10 6.34 -39.41 -0.25 -1.35 16 20 Cl -0.05 -0.49 28.99 -51.86 -1.50 -2.00 16 21 C -0.01 -0.14 9.52 -38.83 -0.37 -0.51 16 22 C -0.15 -2.48 4.79 -26.59 -0.13 -2.61 16 23 C 0.07 1.17 6.68 37.20 0.25 1.42 16 24 O -0.39 -6.59 10.77 -35.23 -0.38 -6.97 16 25 C 0.07 0.99 6.67 37.20 0.25 1.23 16 26 C -0.15 -2.15 4.79 -26.59 -0.13 -2.28 16 27 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 28 H 0.38 8.34 6.81 -40.82 -0.28 8.06 16 29 H 0.06 0.92 8.14 -51.92 -0.42 0.50 16 30 H 0.07 1.31 7.47 -51.93 -0.39 0.92 16 31 H 0.40 5.97 5.48 -40.82 -0.22 5.75 16 32 H 0.17 2.02 6.42 -52.49 -0.34 1.68 16 33 H 0.17 1.32 8.06 -52.49 -0.42 0.90 16 34 H 0.16 1.91 7.74 -52.49 -0.41 1.51 16 35 H 0.08 1.37 7.20 -51.93 -0.37 1.00 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.07 1.37 7.75 -51.93 -0.40 0.97 16 39 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.06 1.01 7.14 -51.93 -0.37 0.64 16 41 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.07 0.89 7.37 -51.93 -0.38 0.50 16 LS Contribution 359.49 15.07 5.42 5.42 Total: -1.00 -28.33 359.49 -8.24 -36.58 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: -5.19 Total: 13.43 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: -1.76 Total: 3.82 kcal Atomic # 7 Polarization: -56.18 SS G_CDS: 0.11 Total: -56.07 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: -0.29 Total: -17.23 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.50 Total: -2.00 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -28.33 -8.24 -36.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671949086.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.582 kcal (2) G-P(sol) polarization free energy of solvation -28.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds