Wall clock time and date at job start Tue Mar 31 2020 22:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86794 * 120.00210 * 2 1 4 4 H 1.48495 * 109.47407 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.46997 * 120.00340 * 3 2 1 6 6 H 1.48502 * 109.46960 * 240.00135 * 3 2 1 7 7 C 1.38812 * 119.99502 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99919 * 179.97438 * 7 2 1 9 9 N 1.36941 * 120.00144 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99839 * 174.11462 * 9 7 2 11 11 C 1.52993 * 109.54284 * 62.24901 * 10 9 7 12 12 N 1.46503 * 109.46921 * 54.84997 * 11 10 9 13 13 C 1.34785 * 119.99719 * 176.63075 * 12 11 10 14 14 O 1.21551 * 120.00124 * 359.97438 * 13 12 11 15 15 C 1.47842 * 119.99674 * 179.97438 * 13 12 11 16 16 C 1.39563 * 120.55718 * 359.72171 * 15 13 12 17 17 N 1.31658 * 120.59787 * 179.72592 * 16 15 13 18 18 C 1.31947 * 121.89250 * 0.58946 * 17 16 15 19 19 C 1.38424 * 121.06229 * 359.67436 * 18 17 16 20 20 Cl 1.73603 * 120.36238 * 180.02562 * 19 18 17 21 21 C 1.38516 * 119.28046 * 0.02658 * 19 18 17 22 22 C 1.53181 * 109.54326 * 301.98273 * 10 9 7 23 23 C 1.53092 * 109.16494 * 297.11495 * 22 10 9 24 24 O 1.42910 * 109.41187 * 302.39374 * 23 22 10 25 25 C 1.42899 * 114.09944 * 61.15628 * 24 23 22 26 26 C 1.53090 * 109.41543 * 298.84172 * 25 24 23 27 27 H 0.96998 * 119.99548 * 359.97438 * 1 2 3 28 28 H 0.96996 * 120.00361 * 354.12297 * 9 7 2 29 29 H 1.09008 * 109.47163 * 174.84657 * 11 10 9 30 30 H 1.09000 * 109.47345 * 294.84639 * 11 10 9 31 31 H 0.96993 * 120.00002 * 356.62819 * 12 11 10 32 32 H 1.07999 * 119.69792 * 0.02562 * 16 15 13 33 33 H 1.07998 * 119.46881 * 179.69781 * 18 17 16 34 34 H 1.08000 * 120.86774 * 180.02562 * 21 19 18 35 35 H 1.08997 * 109.52307 * 57.02041 * 22 10 9 36 36 H 1.09005 * 109.52291 * 177.20840 * 22 10 9 37 37 H 1.08998 * 109.48379 * 182.40814 * 23 22 10 38 38 H 1.08996 * 109.48899 * 62.37918 * 23 22 10 39 39 H 1.09001 * 109.47803 * 178.85488 * 25 24 23 40 40 H 1.09002 * 109.48645 * 58.83155 * 25 24 23 41 41 H 1.08995 * 109.52069 * 297.70188 * 26 25 24 42 42 H 1.09006 * 109.57011 * 177.54470 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 1.2854 2.7464 0.0006 5 1 3.1040 1.6962 1.2125 6 1 3.1039 1.6963 -1.2125 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0520 -3.6535 -0.1312 11 6 2.9995 -3.8247 1.0578 12 7 2.2418 -3.7102 2.3064 13 6 2.8604 -3.8957 3.4894 14 8 4.0468 -4.1584 3.5203 15 6 2.0959 -3.7796 4.7495 16 6 0.7346 -3.4727 4.7278 17 7 0.0518 -3.3744 5.8492 18 6 0.6187 -3.5479 7.0280 19 6 1.9654 -3.8496 7.1355 20 17 2.6924 -4.0746 8.6958 21 6 2.7266 -3.9699 5.9845 22 6 2.8574 -3.6498 -1.4342 23 6 1.8939 -3.5561 -2.6203 24 8 0.9747 -4.6493 -2.5730 25 6 0.1611 -4.6772 -1.3986 26 6 1.0550 -4.8159 -0.1635 27 1 -0.4849 0.8401 0.0004 28 1 0.3593 -2.3903 0.0858 29 1 3.4715 -4.8061 1.0079 30 1 3.7663 -3.0507 1.0257 31 1 1.2950 -3.5009 2.2817 32 1 0.2357 -3.3193 3.7823 33 1 0.0223 -3.4533 7.9234 34 1 3.7793 -4.2049 6.0385 35 1 3.5310 -2.7929 -1.4436 36 1 3.4365 -4.5704 -1.5072 37 1 2.4589 -3.5961 -3.5516 38 1 1.3441 -2.6164 -2.5688 39 1 -0.5222 -5.5249 -1.4499 40 1 -0.4115 -3.7522 -1.3309 41 1 1.5976 -5.7600 -0.2108 42 1 0.4403 -4.7937 0.7365 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671949086.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:33 Heat of formation + Delta-G solvation = -58.721422 kcal Electronic energy + Delta-G solvation = -27626.298177 eV Core-core repulsion = 23631.718109 eV Total energy + Delta-G solvation = -3994.580067 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.83074 -40.84372 -39.87405 -37.76050 -37.32399 -35.24492 -34.03917 -33.66529 -32.32779 -31.95826 -30.93675 -28.43061 -26.01416 -25.62036 -24.78181 -24.37989 -23.35981 -21.71342 -20.22147 -19.41614 -18.99937 -18.13871 -17.77921 -17.16157 -16.84318 -16.74170 -16.47955 -16.37219 -16.13058 -15.83829 -15.47151 -15.31336 -15.12872 -14.63926 -14.37662 -14.15886 -13.75251 -13.67648 -13.62164 -13.16270 -13.15828 -12.93541 -12.81851 -12.68095 -12.34104 -12.26145 -12.09198 -11.74538 -11.57002 -11.34344 -11.12550 -11.08242 -10.96870 -10.68426 -10.31311 -10.23212 -9.97118 -8.97464 -7.90287 -5.16687 -0.62931 -0.18930 0.81697 1.46082 1.49029 1.51971 1.67579 2.11121 2.56841 2.57680 3.09538 3.13605 3.42761 3.50060 3.55846 3.62422 3.76491 3.85567 3.88765 3.97667 4.15888 4.17205 4.25645 4.49847 4.61742 4.65431 4.72216 4.77818 4.79633 4.83692 4.91128 5.05030 5.10919 5.15752 5.21859 5.29379 5.35976 5.45912 5.63214 6.31179 6.39059 6.46851 6.55516 7.09297 7.41411 8.09326 8.36531 9.31185 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.011363 B = 0.003485 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2463.470645 B = 8032.933516 C = 9242.090294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.055 4.055 3 Si 0.945 3.055 4 H -0.300 1.300 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.216 4.216 8 H 0.066 0.934 9 N -0.713 5.713 10 C 0.187 3.813 11 C 0.124 3.876 12 N -0.687 5.687 13 C 0.558 3.442 14 O -0.577 6.577 15 C -0.179 4.179 16 C 0.144 3.856 17 N -0.482 5.482 18 C 0.140 3.860 19 C -0.097 4.097 20 Cl -0.035 7.035 21 C -0.014 4.014 22 C -0.150 4.150 23 C 0.075 3.925 24 O -0.398 6.398 25 C 0.064 3.936 26 C -0.144 4.144 27 H 0.248 0.752 28 H 0.378 0.622 29 H 0.073 0.927 30 H 0.042 0.958 31 H 0.408 0.592 32 H 0.175 0.825 33 H 0.200 0.800 34 H 0.156 0.844 35 H 0.062 0.938 36 H 0.079 0.921 37 H 0.097 0.903 38 H 0.035 0.965 39 H 0.111 0.889 40 H 0.038 0.962 41 H 0.089 0.911 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.796 -11.928 10.087 15.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.248 4.248 3 Si 0.777 3.223 4 H -0.227 1.227 5 H -0.218 1.218 6 H -0.210 1.210 7 C -0.348 4.348 8 H 0.084 0.916 9 N -0.354 5.354 10 C 0.096 3.904 11 C -0.002 4.002 12 N -0.336 5.336 13 C 0.345 3.655 14 O -0.459 6.459 15 C -0.185 4.185 16 C -0.014 4.014 17 N -0.191 5.191 18 C -0.017 4.017 19 C -0.126 4.126 20 Cl -0.006 7.006 21 C -0.041 4.041 22 C -0.190 4.190 23 C -0.002 4.002 24 O -0.317 6.317 25 C -0.013 4.013 26 C -0.182 4.182 27 H 0.057 0.943 28 H 0.212 0.788 29 H 0.091 0.909 30 H 0.060 0.940 31 H 0.245 0.755 32 H 0.192 0.808 33 H 0.217 0.783 34 H 0.174 0.826 35 H 0.080 0.920 36 H 0.098 0.902 37 H 0.115 0.885 38 H 0.053 0.947 39 H 0.129 0.871 40 H 0.056 0.944 41 H 0.108 0.892 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.895 -11.932 9.987 15.586 hybrid contribution 0.863 1.659 0.259 1.887 sum 1.758 -10.274 10.245 14.615 Atomic orbital electron populations 1.69726 1.05785 1.25548 1.59511 1.25141 0.95904 0.99547 1.04255 0.85656 0.77478 0.81615 0.77585 1.22709 1.21816 1.20957 1.19152 0.90850 0.84682 1.40128 0.91577 1.42514 1.05891 0.99964 1.87040 1.20023 0.91820 0.86746 0.91797 1.21774 0.94548 1.00350 0.83543 1.45644 1.14033 1.68944 1.05005 1.18148 0.86453 0.77009 0.83922 1.90735 1.16343 1.50997 1.87830 1.20922 0.95920 1.07576 0.94038 1.23319 0.89725 0.90288 0.98082 1.67957 1.38613 1.14187 0.98304 1.23546 0.90549 0.90492 0.97121 1.21997 0.95248 1.07019 0.88294 1.98399 1.82858 1.95360 1.23956 1.21724 1.01462 0.91461 0.89494 1.22415 0.98683 1.02086 0.95774 1.22363 0.90649 0.88923 0.98235 1.87801 1.52673 1.49190 1.42055 1.22584 0.92543 1.01867 0.84293 1.22327 0.98488 0.98085 0.99302 0.94328 0.78773 0.90874 0.93955 0.75466 0.80797 0.78293 0.82594 0.91974 0.90250 0.88456 0.94652 0.87097 0.94404 0.89198 0.89947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -52.51 13.07 21.65 0.28 -52.23 16 2 C -0.06 -2.85 5.50 84.86 0.47 -2.39 16 3 Si 0.94 44.00 29.55 68.60 2.03 46.02 16 4 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 5 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 6 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 7 C -0.22 -10.32 8.67 84.03 0.73 -9.59 16 8 H 0.07 3.19 6.78 -2.91 -0.02 3.17 16 9 N -0.71 -28.75 3.61 -302.80 -1.09 -29.84 16 10 C 0.19 5.97 0.41 3.72 0.00 5.97 16 11 C 0.12 4.00 4.38 86.38 0.38 4.38 16 12 N -0.69 -21.07 5.08 -465.96 -2.37 -23.44 16 13 C 0.56 17.89 7.78 86.78 0.68 18.56 16 14 O -0.58 -21.89 16.42 -3.88 -0.06 -21.96 16 15 C -0.18 -4.81 5.89 -20.00 -0.12 -4.93 16 16 C 0.14 3.58 10.71 85.04 0.91 4.49 16 17 N -0.48 -11.47 10.34 -194.68 -2.01 -13.48 16 18 C 0.14 2.69 10.97 84.72 0.93 3.62 16 19 C -0.10 -1.93 6.34 22.38 0.14 -1.79 16 20 Cl -0.03 -0.58 28.99 -2.72 -0.08 -0.66 16 21 C -0.01 -0.35 9.52 22.76 0.22 -0.13 16 22 C -0.15 -4.71 4.79 30.69 0.15 -4.56 16 23 C 0.07 2.44 6.68 72.01 0.48 2.92 16 24 O -0.40 -12.62 10.77 -148.98 -1.60 -14.22 16 25 C 0.06 1.79 6.67 72.01 0.48 2.27 16 26 C -0.14 -3.75 4.79 30.68 0.15 -3.60 16 27 H 0.25 13.68 8.31 -92.71 -0.77 12.91 16 28 H 0.38 16.48 6.81 -92.71 -0.63 15.84 16 29 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 30 H 0.04 1.60 7.47 -2.39 -0.02 1.58 16 31 H 0.41 11.77 5.48 -92.71 -0.51 11.26 16 32 H 0.18 4.02 6.42 -2.91 -0.02 4.00 16 33 H 0.20 2.46 8.06 -2.91 -0.02 2.43 16 34 H 0.16 3.72 7.74 -2.91 -0.02 3.70 16 35 H 0.06 2.15 7.20 -2.39 -0.02 2.13 16 36 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 37 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 38 H 0.04 1.40 7.75 -2.39 -0.02 1.38 16 39 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 40 H 0.04 1.24 7.14 -2.39 -0.02 1.23 16 41 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.08 1.94 7.37 -2.38 -0.02 1.92 16 Total: -1.00 -60.86 359.49 0.61 -60.24 By element: Atomic # 1 Polarization: 34.43 SS G_CDS: -0.06 Total: 34.37 kcal Atomic # 6 Polarization: 9.62 SS G_CDS: 5.59 Total: 15.21 kcal Atomic # 7 Polarization: -113.81 SS G_CDS: -5.19 Total: -119.00 kcal Atomic # 8 Polarization: -34.51 SS G_CDS: -1.67 Total: -36.18 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -0.08 Total: -0.66 kcal Total: -60.86 0.61 -60.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671949086.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.521 kcal (2) G-P(sol) polarization free energy of solvation -60.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds