Wall clock time and date at job start Tue Mar 31 2020 22:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00038 * 2 1 4 4 H 1.48498 * 109.47005 * 269.99131 * 3 2 1 5 5 H 1.48501 * 109.47179 * 29.99508 * 3 2 1 6 6 H 1.48497 * 109.46785 * 149.99656 * 3 2 1 7 7 C 1.38813 * 119.99744 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99831 * 192.35858 * 7 2 1 9 9 N 1.36941 * 120.00023 * 12.35272 * 7 2 1 10 10 C 1.46925 * 120.60353 * 210.51174 * 9 7 2 11 11 C 1.53198 * 108.77197 * 233.53856 * 10 9 7 12 12 C 1.53044 * 109.33516 * 305.41661 * 11 10 9 13 13 C 1.53034 * 109.53939 * 61.34828 * 12 11 10 14 14 C 1.53004 * 109.49867 * 178.64854 * 13 12 11 15 15 O 1.42892 * 109.47485 * 180.54028 * 14 13 12 16 16 N 1.46496 * 109.49928 * 58.58657 * 13 12 11 17 17 C 1.34778 * 119.99821 * 58.64393 * 16 13 12 18 18 O 1.21518 * 120.00551 * 5.05315 * 17 16 13 19 19 C 1.48076 * 119.99833 * 185.05435 * 17 16 13 20 20 C 1.39871 * 120.93180 * 359.72108 * 19 17 16 21 21 C 1.38082 * 119.01647 * 179.75221 * 20 19 17 22 22 N 1.31847 * 120.94311 * 0.53285 * 21 20 19 23 23 C 1.31753 * 122.06945 * 359.74055 * 22 21 20 24 24 C 1.38357 * 120.87218 * 359.97382 * 23 22 21 25 25 Cl 1.73603 * 120.51756 * 180.02562 * 24 23 22 26 26 C 1.46927 * 120.62733 * 30.49336 * 9 7 2 27 27 H 0.97000 * 119.99626 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.56244 * 113.76988 * 10 9 7 29 29 H 1.09000 * 109.62274 * 353.33844 * 10 9 7 30 30 H 1.09000 * 109.49742 * 185.45003 * 11 10 9 31 31 H 1.08998 * 109.49756 * 65.37846 * 11 10 9 32 32 H 1.09005 * 109.45927 * 181.37087 * 12 11 10 33 33 H 1.09003 * 109.45831 * 301.32578 * 12 11 10 34 34 H 1.09002 * 109.47366 * 300.54705 * 14 13 12 35 35 H 1.09001 * 109.46913 * 60.53972 * 14 13 12 36 36 H 0.96703 * 114.00182 * 180.02562 * 15 14 13 37 37 H 0.96995 * 120.00163 * 238.64376 * 16 13 12 38 38 H 1.07998 * 120.48878 * 0.02562 * 20 19 17 39 39 H 1.08003 * 119.53242 * 180.24708 * 21 20 19 40 40 H 1.08008 * 119.56346 * 179.97438 * 23 22 21 41 41 H 1.08997 * 109.58828 * 6.64723 * 26 9 7 42 42 H 1.09003 * 109.58411 * 246.21458 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0714 -1.2130 0.2007 9 7 1.3492 -2.3745 -0.2526 10 6 1.8018 -3.6342 0.3531 11 6 2.0064 -4.6696 -0.7574 12 6 0.7210 -4.7925 -1.5788 13 6 0.3979 -3.4450 -2.2283 14 6 -0.8687 -3.5774 -3.0764 15 8 -1.1628 -2.3222 -3.6926 16 7 1.5158 -3.0323 -3.0804 17 6 1.9151 -3.8216 -4.0974 18 8 1.2915 -4.8296 -4.3652 19 6 3.1137 -3.4604 -4.8883 20 6 3.8426 -2.3018 -4.6007 21 6 4.9570 -2.0058 -5.3603 22 7 5.3305 -2.7916 -6.3509 23 6 4.6705 -3.8892 -6.6601 24 6 3.5456 -4.2656 -5.9480 25 17 2.6834 -5.7141 -6.3629 26 6 0.1743 -2.3959 -1.1346 27 1 -0.4849 0.8401 -0.0004 28 1 1.0481 -3.9939 1.0536 29 1 2.7430 -3.4707 0.8779 30 1 2.2486 -5.6355 -0.3140 31 1 2.8232 -4.3516 -1.4053 32 1 0.8563 -5.5463 -2.3544 33 1 -0.1005 -5.0871 -0.9257 34 1 -0.7129 -4.3328 -3.8466 35 1 -1.7026 -3.8740 -2.4401 36 1 -1.9554 -2.3321 -4.2466 37 1 1.9687 -2.1911 -2.9127 38 1 3.5408 -1.6508 -3.7935 39 1 5.5283 -1.1154 -5.1429 40 1 5.0122 -4.5033 -7.4803 41 1 0.0419 -1.4149 -1.5908 42 1 -0.7123 -2.6548 -0.5557 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672499926.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:24 Heat of formation + Delta-G solvation = -19.652735 kcal Electronic energy + Delta-G solvation = -28821.375737 eV Core-core repulsion = 24828.489815 eV Total energy + Delta-G solvation = -3992.885922 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.72644 -39.58205 -37.41182 -36.52209 -35.91195 -33.85438 -33.13795 -32.26667 -31.17295 -30.19730 -29.71049 -25.50817 -25.10793 -24.91874 -23.59956 -22.30468 -21.28768 -20.32748 -18.75601 -18.19536 -16.94634 -16.80189 -16.60741 -16.21628 -15.59485 -15.19625 -15.00149 -14.62120 -14.21987 -14.17247 -14.03950 -13.92770 -13.45872 -13.11924 -13.06539 -12.52755 -12.40833 -12.23087 -11.99360 -11.93745 -11.56881 -11.21029 -11.12150 -10.96219 -10.82299 -10.53511 -10.26299 -10.18629 -10.02669 -9.94642 -9.81932 -9.62723 -9.52902 -9.08737 -8.92646 -8.59260 -8.46351 -6.73486 -5.87602 -3.35782 0.53876 0.77340 2.01691 3.02786 3.29357 3.37270 3.38989 3.39855 3.71280 4.19917 4.39361 4.50239 4.62910 4.64669 4.73494 5.04815 5.24951 5.36551 5.41108 5.53048 5.55111 5.67968 5.69369 5.78226 5.79597 5.92774 6.05905 6.24857 6.27167 6.33942 6.43543 6.46840 6.58827 6.76753 6.91927 6.99838 7.23713 7.59432 7.59946 7.71131 7.99806 8.06223 8.37334 8.54992 9.11426 9.73254 10.31907 11.19855 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.011753 B = 0.004851 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.887752 B = 5771.001794 C = 6901.308712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.008 3.992 3 Si 0.901 3.099 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.261 4.261 8 H 0.066 0.934 9 N -0.591 5.591 10 C 0.142 3.858 11 C -0.128 4.128 12 C -0.121 4.121 13 C 0.158 3.842 14 C 0.067 3.933 15 O -0.560 6.560 16 N -0.674 5.674 17 C 0.549 3.451 18 O -0.524 6.524 19 C -0.075 4.075 20 C -0.125 4.125 21 C 0.096 3.904 22 N -0.460 5.460 23 C 0.102 3.898 24 C -0.046 4.046 25 Cl -0.022 7.022 26 C 0.175 3.825 27 H 0.256 0.744 28 H 0.018 0.982 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.044 0.956 36 H 0.368 0.632 37 H 0.407 0.593 38 H 0.154 0.846 39 H 0.169 0.831 40 H 0.167 0.833 41 H 0.106 0.894 42 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.230 -7.545 -10.483 13.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.192 4.192 3 Si 0.731 3.269 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.391 4.391 8 H 0.084 0.916 9 N -0.313 5.313 10 C 0.016 3.984 11 C -0.167 4.167 12 C -0.159 4.159 13 C 0.070 3.930 14 C -0.012 4.012 15 O -0.364 6.364 16 N -0.324 5.324 17 C 0.334 3.666 18 O -0.402 6.402 19 C -0.087 4.087 20 C -0.146 4.146 21 C -0.060 4.060 22 N -0.169 5.169 23 C -0.056 4.056 24 C -0.076 4.076 25 Cl 0.007 6.993 26 C 0.049 3.951 27 H 0.066 0.934 28 H 0.036 0.964 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.062 0.938 36 H 0.213 0.787 37 H 0.244 0.756 38 H 0.171 0.829 39 H 0.186 0.814 40 H 0.185 0.815 41 H 0.124 0.876 42 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 4.862 -7.822 -10.764 14.166 hybrid contribution -0.746 0.796 0.363 1.150 sum 4.116 -7.026 -10.401 13.209 Atomic orbital electron populations 1.69962 1.05230 1.25712 1.53139 1.25160 0.95336 0.98393 1.00265 0.86317 0.79114 0.83716 0.77757 1.21301 1.21678 1.20412 1.19158 0.91246 0.83902 1.44777 0.91642 1.44031 1.32907 1.03080 1.51290 1.20980 0.97664 0.87056 0.92707 1.21921 0.97084 0.98909 0.98812 1.21730 0.98539 0.96493 0.99155 1.21297 0.83370 0.97499 0.90817 1.22610 0.96314 0.86029 0.96240 1.86565 1.49071 1.33245 1.67470 1.45781 1.34208 1.23215 1.29205 1.17930 0.83636 0.84211 0.80827 1.90739 1.55201 1.26094 1.68204 1.20530 0.97234 0.95024 0.95890 1.22589 0.95350 0.95975 1.00642 1.22864 0.94168 0.98486 0.90489 1.67671 1.29840 1.03695 1.15705 1.22791 0.90354 0.93917 0.98581 1.22235 0.96198 0.91979 0.97216 1.98413 1.75569 1.33247 1.92024 1.21027 0.88862 0.97472 0.87744 0.93411 0.96428 0.92838 0.93094 0.92647 0.91076 0.91828 0.91991 0.93778 0.78707 0.75618 0.82890 0.81408 0.81544 0.87643 0.94960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.54 11.09 55.49 0.62 -23.93 16 2 C 0.01 0.21 5.01 -17.43 -0.09 0.12 16 3 Si 0.90 20.29 29.57 -169.99 -5.03 15.26 16 4 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.26 -6.53 9.58 -15.06 -0.14 -6.67 16 8 H 0.07 1.62 7.86 -52.49 -0.41 1.20 16 9 N -0.59 -13.52 2.90 -172.32 -0.50 -14.01 16 10 C 0.14 2.83 6.52 -3.71 -0.02 2.81 16 11 C -0.13 -2.22 5.93 -26.61 -0.16 -2.38 16 12 C -0.12 -2.09 4.45 -26.69 -0.12 -2.21 16 13 C 0.16 2.90 0.45 -131.70 -0.06 2.84 16 14 C 0.07 1.14 5.75 37.16 0.21 1.36 16 15 O -0.56 -9.60 12.98 -35.23 -0.46 -10.06 16 16 N -0.67 -11.81 3.99 -48.36 -0.19 -12.00 16 17 C 0.55 9.21 7.18 -12.22 -0.09 9.12 16 18 O -0.52 -9.42 10.42 5.35 0.06 -9.36 16 19 C -0.07 -1.10 5.91 -104.62 -0.62 -1.72 16 20 C -0.12 -1.60 9.61 -39.03 -0.38 -1.97 16 21 C 0.10 1.10 11.17 -17.60 -0.20 0.91 16 22 N -0.46 -5.67 10.33 -13.27 -0.14 -5.80 16 23 C 0.10 1.20 10.98 -17.54 -0.19 1.00 16 24 C -0.05 -0.62 6.38 -38.91 -0.25 -0.87 16 25 Cl -0.02 -0.30 26.24 -51.86 -1.36 -1.66 16 26 C 0.18 3.89 3.76 -3.71 -0.01 3.88 16 27 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 28 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.05 1.00 7.51 -51.93 -0.39 0.61 16 32 H 0.07 1.25 6.29 -51.93 -0.33 0.93 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.06 1.07 6.12 -51.93 -0.32 0.75 16 35 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.37 4.53 9.12 45.56 0.42 4.94 16 37 H 0.41 7.36 6.63 -40.82 -0.27 7.09 16 38 H 0.15 1.89 6.55 -52.49 -0.34 1.54 16 39 H 0.17 1.44 8.06 -52.48 -0.42 1.01 16 40 H 0.17 1.49 8.06 -52.48 -0.42 1.07 16 41 H 0.11 2.67 5.83 -51.93 -0.30 2.37 16 42 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 350.50 15.07 5.28 5.28 Total: -1.00 -29.60 350.50 -8.29 -37.89 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -4.45 Total: 12.18 kcal Atomic # 6 Polarization: 8.32 SS G_CDS: -2.11 Total: 6.21 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: -0.21 Total: -55.75 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.40 Total: -19.42 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.03 Total: 15.26 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -1.36 Total: -1.66 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.60 -8.29 -37.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672499926.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.238 kcal (2) G-P(sol) polarization free energy of solvation -29.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds