Wall clock time and date at job start Tue Mar 31 2020 22:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00038 * 2 1 4 4 H 1.48498 * 109.47005 * 269.99131 * 3 2 1 5 5 H 1.48501 * 109.47179 * 29.99508 * 3 2 1 6 6 H 1.48497 * 109.46785 * 149.99656 * 3 2 1 7 7 C 1.38813 * 119.99744 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99831 * 192.35858 * 7 2 1 9 9 N 1.36941 * 120.00023 * 12.35272 * 7 2 1 10 10 C 1.46925 * 120.60353 * 210.51174 * 9 7 2 11 11 C 1.53198 * 108.77197 * 233.53856 * 10 9 7 12 12 C 1.53044 * 109.33516 * 305.41661 * 11 10 9 13 13 C 1.53034 * 109.53939 * 61.34828 * 12 11 10 14 14 C 1.53004 * 109.49867 * 178.64854 * 13 12 11 15 15 O 1.42892 * 109.47485 * 180.54028 * 14 13 12 16 16 N 1.46496 * 109.49928 * 58.58657 * 13 12 11 17 17 C 1.34778 * 119.99821 * 58.64393 * 16 13 12 18 18 O 1.21518 * 120.00551 * 5.05315 * 17 16 13 19 19 C 1.48076 * 119.99833 * 185.05435 * 17 16 13 20 20 C 1.39871 * 120.93180 * 359.72108 * 19 17 16 21 21 C 1.38082 * 119.01647 * 179.75221 * 20 19 17 22 22 N 1.31847 * 120.94311 * 0.53285 * 21 20 19 23 23 C 1.31753 * 122.06945 * 359.74055 * 22 21 20 24 24 C 1.38357 * 120.87218 * 359.97382 * 23 22 21 25 25 Cl 1.73603 * 120.51756 * 180.02562 * 24 23 22 26 26 C 1.46927 * 120.62733 * 30.49336 * 9 7 2 27 27 H 0.97000 * 119.99626 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.56244 * 113.76988 * 10 9 7 29 29 H 1.09000 * 109.62274 * 353.33844 * 10 9 7 30 30 H 1.09000 * 109.49742 * 185.45003 * 11 10 9 31 31 H 1.08998 * 109.49756 * 65.37846 * 11 10 9 32 32 H 1.09005 * 109.45927 * 181.37087 * 12 11 10 33 33 H 1.09003 * 109.45831 * 301.32578 * 12 11 10 34 34 H 1.09002 * 109.47366 * 300.54705 * 14 13 12 35 35 H 1.09001 * 109.46913 * 60.53972 * 14 13 12 36 36 H 0.96703 * 114.00182 * 180.02562 * 15 14 13 37 37 H 0.96995 * 120.00163 * 238.64376 * 16 13 12 38 38 H 1.07998 * 120.48878 * 0.02562 * 20 19 17 39 39 H 1.08003 * 119.53242 * 180.24708 * 21 20 19 40 40 H 1.08008 * 119.56346 * 179.97438 * 23 22 21 41 41 H 1.08997 * 109.58828 * 6.64723 * 26 9 7 42 42 H 1.09003 * 109.58411 * 246.21458 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0714 -1.2130 0.2007 9 7 1.3492 -2.3745 -0.2526 10 6 1.8018 -3.6342 0.3531 11 6 2.0064 -4.6696 -0.7574 12 6 0.7210 -4.7925 -1.5788 13 6 0.3979 -3.4450 -2.2283 14 6 -0.8687 -3.5774 -3.0764 15 8 -1.1628 -2.3222 -3.6926 16 7 1.5158 -3.0323 -3.0804 17 6 1.9151 -3.8216 -4.0974 18 8 1.2915 -4.8296 -4.3652 19 6 3.1137 -3.4604 -4.8883 20 6 3.8426 -2.3018 -4.6007 21 6 4.9570 -2.0058 -5.3603 22 7 5.3305 -2.7916 -6.3509 23 6 4.6705 -3.8892 -6.6601 24 6 3.5456 -4.2656 -5.9480 25 17 2.6834 -5.7141 -6.3629 26 6 0.1743 -2.3959 -1.1346 27 1 -0.4849 0.8401 -0.0004 28 1 1.0481 -3.9939 1.0536 29 1 2.7430 -3.4707 0.8779 30 1 2.2486 -5.6355 -0.3140 31 1 2.8232 -4.3516 -1.4053 32 1 0.8563 -5.5463 -2.3544 33 1 -0.1005 -5.0871 -0.9257 34 1 -0.7129 -4.3328 -3.8466 35 1 -1.7026 -3.8740 -2.4401 36 1 -1.9554 -2.3321 -4.2466 37 1 1.9687 -2.1911 -2.9127 38 1 3.5408 -1.6508 -3.7935 39 1 5.5283 -1.1154 -5.1429 40 1 5.0122 -4.5033 -7.4803 41 1 0.0419 -1.4149 -1.5908 42 1 -0.7123 -2.6548 -0.5557 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672499926.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:23 Heat of formation + Delta-G solvation = -40.084770 kcal Electronic energy + Delta-G solvation = -28822.261736 eV Core-core repulsion = 24828.489815 eV Total energy + Delta-G solvation = -3993.771922 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.89610 -40.80803 -38.84341 -37.56080 -37.34990 -35.42384 -34.52469 -33.62605 -32.15152 -31.87221 -31.20924 -27.32139 -26.63710 -26.01931 -24.57530 -23.98553 -22.62749 -21.79554 -20.19323 -19.43651 -18.67224 -18.16731 -17.72360 -17.25688 -16.98792 -16.48523 -16.32663 -16.20824 -15.78761 -15.32112 -15.21786 -15.12211 -14.94301 -14.68718 -14.47085 -14.10249 -13.99399 -13.50588 -13.26742 -13.04671 -12.98789 -12.84893 -12.73408 -12.52840 -12.23425 -12.17901 -11.95115 -11.68007 -11.50395 -11.31991 -11.17949 -10.96858 -10.81888 -10.52328 -10.22740 -10.05847 -9.84137 -8.61543 -7.82359 -5.32675 -0.52239 -0.16797 1.00286 1.50992 1.53386 1.61028 1.86032 2.11014 2.53984 2.65657 3.32108 3.32735 3.35049 3.46381 3.55572 3.67923 3.72187 4.07357 4.09045 4.17786 4.24623 4.35730 4.48372 4.51462 4.57263 4.64777 4.75841 4.82425 4.84876 4.93333 4.98199 5.10605 5.20623 5.32123 5.34747 5.47780 5.65108 5.71941 5.77996 6.44071 6.63204 6.67020 6.92919 7.17772 7.21299 7.86890 8.41663 9.22985 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.011753 B = 0.004851 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.887752 B = 5771.001794 C = 6901.308712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.041 4.041 3 Si 0.961 3.039 4 H -0.280 1.280 5 H -0.303 1.303 6 H -0.269 1.269 7 C -0.260 4.260 8 H 0.070 0.930 9 N -0.603 5.603 10 C 0.140 3.860 11 C -0.116 4.116 12 C -0.115 4.115 13 C 0.163 3.837 14 C 0.073 3.927 15 O -0.579 6.579 16 N -0.677 5.677 17 C 0.550 3.450 18 O -0.539 6.539 19 C -0.093 4.093 20 C -0.128 4.128 21 C 0.104 3.896 22 N -0.466 5.466 23 C 0.110 3.890 24 C -0.055 4.055 25 Cl -0.027 7.027 26 C 0.192 3.808 27 H 0.248 0.752 28 H 0.014 0.986 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.049 0.951 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.052 0.948 36 H 0.388 0.612 37 H 0.403 0.597 38 H 0.154 0.846 39 H 0.199 0.801 40 H 0.195 0.805 41 H 0.073 0.927 42 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.994 -7.984 -11.493 15.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.237 4.237 3 Si 0.790 3.210 4 H -0.206 1.206 5 H -0.230 1.230 6 H -0.194 1.194 7 C -0.390 4.390 8 H 0.087 0.913 9 N -0.326 5.326 10 C 0.015 3.985 11 C -0.155 4.155 12 C -0.154 4.154 13 C 0.075 3.925 14 C -0.006 4.006 15 O -0.386 6.386 16 N -0.326 5.326 17 C 0.336 3.664 18 O -0.417 6.417 19 C -0.105 4.105 20 C -0.148 4.148 21 C -0.052 4.052 22 N -0.176 5.176 23 C -0.048 4.048 24 C -0.085 4.085 25 Cl 0.002 6.998 26 C 0.066 3.934 27 H 0.058 0.942 28 H 0.032 0.968 29 H 0.074 0.926 30 H 0.094 0.906 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.236 0.764 37 H 0.239 0.761 38 H 0.172 0.828 39 H 0.216 0.784 40 H 0.212 0.788 41 H 0.091 0.909 42 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges 6.640 -8.291 -11.793 15.871 hybrid contribution -1.277 0.914 0.677 1.710 sum 5.363 -7.377 -11.116 14.378 Atomic orbital electron populations 1.70131 1.06645 1.25713 1.55055 1.25811 0.95902 1.01220 1.00780 0.85368 0.78037 0.79857 0.77779 1.20617 1.23030 1.19362 1.19430 0.91523 0.84731 1.43282 0.91283 1.44221 1.32807 1.03617 1.51940 1.21086 0.97444 0.86482 0.93536 1.21789 0.96813 0.99141 0.97720 1.21690 0.98757 0.95733 0.99181 1.21080 0.84626 0.96588 0.90218 1.22527 0.95945 0.85968 0.96154 1.86520 1.50572 1.33429 1.68054 1.45708 1.34058 1.23271 1.29583 1.18178 0.84050 0.83704 0.80430 1.90721 1.55887 1.26605 1.68533 1.20450 0.97039 0.96403 0.96617 1.22658 0.95719 0.95447 1.00998 1.23334 0.93486 0.98959 0.89419 1.67788 1.29910 1.03930 1.15944 1.23212 0.89281 0.93763 0.98533 1.22357 0.96876 0.91892 0.97401 1.98409 1.75823 1.33529 1.92024 1.20638 0.87760 0.96889 0.88151 0.94243 0.96785 0.92591 0.90551 0.93203 0.90809 0.91306 0.91849 0.92955 0.76380 0.76102 0.82822 0.78420 0.78839 0.90877 0.97706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.19 11.09 21.65 0.24 -51.95 16 2 C -0.04 -2.12 5.01 84.86 0.43 -1.69 16 3 Si 0.96 41.84 29.57 68.60 2.03 43.86 16 4 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 5 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 6 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 7 C -0.26 -12.98 9.58 84.03 0.81 -12.17 16 8 H 0.07 3.35 7.86 -2.91 -0.02 3.33 16 9 N -0.60 -27.73 2.90 -699.09 -2.02 -29.76 16 10 C 0.14 5.48 6.52 86.36 0.56 6.04 16 11 C -0.12 -3.83 5.93 30.68 0.18 -3.65 16 12 C -0.12 -3.87 4.45 30.62 0.14 -3.74 16 13 C 0.16 5.96 0.45 3.68 0.00 5.96 16 14 C 0.07 2.47 5.75 71.98 0.41 2.88 16 15 O -0.58 -19.86 12.98 -148.98 -1.93 -21.79 16 16 N -0.68 -23.51 3.99 -425.20 -1.70 -25.21 16 17 C 0.55 18.04 7.18 86.85 0.62 18.66 16 18 O -0.54 -18.88 10.42 -3.77 -0.04 -18.92 16 19 C -0.09 -2.63 5.91 -19.86 -0.12 -2.74 16 20 C -0.13 -3.07 9.61 22.63 0.22 -2.85 16 21 C 0.10 2.11 11.17 84.65 0.95 3.06 16 22 N -0.47 -10.20 10.33 -195.90 -2.02 -12.23 16 23 C 0.11 2.31 10.98 84.73 0.93 3.24 16 24 C -0.06 -1.40 6.38 22.71 0.14 -1.25 16 25 Cl -0.03 -0.70 26.24 -2.72 -0.07 -0.77 16 26 C 0.19 8.70 3.76 86.36 0.32 9.02 16 27 H 0.25 13.73 8.31 -92.71 -0.77 12.96 16 28 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.06 2.14 7.93 -2.39 -0.02 2.12 16 30 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.05 1.72 7.51 -2.39 -0.02 1.70 16 32 H 0.07 2.49 6.29 -2.38 -0.01 2.48 16 33 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.06 2.14 6.12 -2.39 -0.01 2.12 16 35 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.39 9.38 9.12 -74.06 -0.68 8.70 16 37 H 0.40 14.60 6.63 -92.71 -0.61 13.98 16 38 H 0.15 3.63 6.55 -2.91 -0.02 3.61 16 39 H 0.20 2.71 8.06 -2.91 -0.02 2.69 16 40 H 0.19 2.88 8.06 -2.91 -0.02 2.85 16 41 H 0.07 3.82 5.83 -2.39 -0.01 3.81 16 42 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 Total: -1.00 -63.28 350.50 -0.13 -63.42 By element: Atomic # 1 Polarization: 32.78 SS G_CDS: -0.21 Total: 32.57 kcal Atomic # 6 Polarization: 15.17 SS G_CDS: 5.60 Total: 20.77 kcal Atomic # 7 Polarization: -113.64 SS G_CDS: -5.51 Total: -119.14 kcal Atomic # 8 Polarization: -38.74 SS G_CDS: -1.97 Total: -40.71 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.86 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -0.07 Total: -0.77 kcal Total: -63.28 -0.13 -63.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672499926.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.331 kcal (2) G-P(sol) polarization free energy of solvation -63.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds