Wall clock time and date at job start Tue Mar 31 2020 22:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86794 * 120.00023 * 2 1 4 4 H 1.48511 * 109.47103 * 269.99679 * 3 2 1 5 5 H 1.48493 * 109.47348 * 29.99806 * 3 2 1 6 6 H 1.48504 * 109.47085 * 150.00043 * 3 2 1 7 7 C 1.38812 * 119.99634 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99827 * 161.63706 * 7 2 1 9 9 N 1.36936 * 120.00300 * 341.63709 * 7 2 1 10 10 C 1.46931 * 120.62991 * 150.50802 * 9 7 2 11 11 C 1.53191 * 108.77353 * 126.12015 * 10 9 7 12 12 C 1.53034 * 109.31669 * 54.62905 * 11 10 9 13 13 C 1.53038 * 109.53972 * 298.64036 * 12 11 10 14 14 C 1.53004 * 109.49924 * 181.34726 * 13 12 11 15 15 O 1.42898 * 109.47711 * 174.35529 * 14 13 12 16 16 N 1.46497 * 109.49536 * 301.40842 * 13 12 11 17 17 C 1.34784 * 120.00378 * 299.97105 * 16 13 12 18 18 O 1.21522 * 119.99651 * 354.93975 * 17 16 13 19 19 C 1.48070 * 120.00123 * 174.93563 * 17 16 13 20 20 C 1.39867 * 120.93443 * 0.02562 * 19 17 16 21 21 C 1.38080 * 119.02157 * 179.97438 * 20 19 17 22 22 N 1.31847 * 120.93872 * 0.02562 * 21 20 19 23 23 C 1.31756 * 122.07254 * 0.02562 * 22 21 20 24 24 C 1.38352 * 120.87169 * 359.73218 * 23 22 21 25 25 Cl 1.73602 * 120.52426 * 180.29040 * 24 23 22 26 26 C 1.46921 * 120.62823 * 330.22898 * 9 7 2 27 27 H 0.97000 * 119.99893 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.58435 * 245.90141 * 10 9 7 29 29 H 1.08990 * 109.58662 * 6.32977 * 10 9 7 30 30 H 1.09003 * 109.49656 * 174.58805 * 11 10 9 31 31 H 1.09008 * 109.49462 * 294.68041 * 11 10 9 32 32 H 1.09006 * 109.45872 * 58.65435 * 12 11 10 33 33 H 1.08997 * 109.46299 * 178.62680 * 12 11 10 34 34 H 1.09001 * 109.46959 * 294.36018 * 14 13 12 35 35 H 1.09007 * 109.46924 * 54.35406 * 14 13 12 36 36 H 0.96689 * 114.00152 * 180.02562 * 15 14 13 37 37 H 0.96999 * 120.00159 * 119.97208 * 16 13 12 38 38 H 1.08001 * 120.48657 * 0.02562 * 20 19 17 39 39 H 1.07996 * 119.53350 * 179.97438 * 21 20 19 40 40 H 1.08003 * 119.56345 * 180.02562 * 23 22 21 41 41 H 1.08998 * 109.59265 * 353.66756 * 26 9 7 42 42 H 1.09001 * 109.58829 * 114.09872 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4002 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0490 -1.2262 -0.2941 9 7 1.3778 -2.3577 0.3746 10 6 1.7911 -3.6521 -0.1846 11 6 2.0935 -4.6136 0.9689 12 6 0.8790 -4.6888 1.8970 13 6 0.5968 -3.3039 2.4838 14 6 -0.5969 -3.3869 3.4374 15 8 -0.7783 -2.1258 4.0846 16 7 1.7754 -2.8336 3.2157 17 6 2.2450 -3.5405 4.2629 18 8 1.6387 -4.5169 4.6576 19 6 3.4995 -3.1274 4.9322 20 6 4.2127 -2.0067 4.4943 21 6 5.3777 -1.6568 5.1478 22 7 5.8198 -2.3625 6.1700 23 6 5.1808 -3.4254 6.6149 24 6 4.0028 -3.8450 6.0229 25 17 3.1643 -5.2424 6.6213 26 6 0.2773 -2.3275 1.3475 27 1 -0.4850 0.8401 -0.0004 28 1 0.9868 -4.0586 -0.7979 29 1 2.6854 -3.5184 -0.7930 30 1 2.3082 -5.6049 0.5695 31 1 2.9565 -4.2513 1.5278 32 1 0.0106 -5.0275 1.3318 33 1 1.0825 -5.3910 2.7053 34 1 -1.4953 -3.6387 2.8739 35 1 -0.4105 -4.1563 4.1868 36 1 -1.5193 -2.1053 4.7054 37 1 2.2180 -2.0134 2.9468 38 1 3.8570 -1.4232 3.6580 39 1 5.9352 -0.7932 4.8164 40 1 5.5794 -3.9735 7.4558 41 1 0.1729 -1.3200 1.7500 42 1 -0.6504 -2.6261 0.8592 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672499933.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:25 Heat of formation + Delta-G solvation = -40.094755 kcal Electronic energy + Delta-G solvation = -28838.139906 eV Core-core repulsion = 24844.367551 eV Total energy + Delta-G solvation = -3993.772355 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.88925 -40.80815 -38.84358 -37.55969 -37.35289 -35.41630 -34.51646 -33.62428 -32.15259 -31.89375 -31.23841 -27.30771 -26.64184 -26.01900 -24.57461 -24.00765 -22.63166 -21.79502 -20.19487 -19.43203 -18.66732 -18.18830 -17.72026 -17.25506 -16.96612 -16.47668 -16.30703 -16.20483 -15.80630 -15.32944 -15.24465 -15.12179 -14.95300 -14.68647 -14.49319 -14.13233 -13.99201 -13.48177 -13.26696 -13.06058 -12.98656 -12.90640 -12.71431 -12.50602 -12.23648 -12.17629 -11.98628 -11.68902 -11.50852 -11.31133 -11.19537 -10.96982 -10.81100 -10.51785 -10.22271 -10.05792 -9.83908 -8.64297 -7.84971 -5.30776 -0.51920 -0.16731 1.00448 1.50386 1.53467 1.61323 1.87108 2.11010 2.54237 2.65981 3.29668 3.32441 3.34995 3.46465 3.55615 3.67406 3.72292 4.06599 4.08328 4.15532 4.24013 4.35597 4.48339 4.51435 4.57292 4.64674 4.76017 4.82146 4.84033 4.92763 4.97121 5.10356 5.20176 5.30872 5.34754 5.47304 5.62406 5.70226 5.73889 6.41652 6.63469 6.67122 6.91623 7.16127 7.22126 7.86195 8.41357 9.21412 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.011710 B = 0.004906 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2390.446227 B = 5705.855415 C = 6840.677904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.039 4.039 3 Si 0.956 3.044 4 H -0.291 1.291 5 H -0.299 1.299 6 H -0.258 1.258 7 C -0.262 4.262 8 H 0.070 0.930 9 N -0.602 5.602 10 C 0.140 3.860 11 C -0.116 4.116 12 C -0.115 4.115 13 C 0.164 3.836 14 C 0.074 3.926 15 O -0.579 6.579 16 N -0.676 5.676 17 C 0.551 3.449 18 O -0.539 6.539 19 C -0.093 4.093 20 C -0.128 4.128 21 C 0.104 3.896 22 N -0.466 5.466 23 C 0.110 3.890 24 C -0.055 4.055 25 Cl -0.027 7.027 26 C 0.192 3.808 27 H 0.248 0.752 28 H 0.014 0.986 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.050 0.950 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.052 0.948 35 H 0.064 0.936 36 H 0.388 0.612 37 H 0.403 0.597 38 H 0.154 0.846 39 H 0.199 0.801 40 H 0.195 0.805 41 H 0.065 0.935 42 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.929 -7.367 11.667 15.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.236 4.236 3 Si 0.784 3.216 4 H -0.218 1.218 5 H -0.226 1.226 6 H -0.182 1.182 7 C -0.392 4.392 8 H 0.087 0.913 9 N -0.325 5.325 10 C 0.015 3.985 11 C -0.155 4.155 12 C -0.153 4.153 13 C 0.076 3.924 14 C -0.005 4.005 15 O -0.386 6.386 16 N -0.326 5.326 17 C 0.337 3.663 18 O -0.417 6.417 19 C -0.105 4.105 20 C -0.148 4.148 21 C -0.052 4.052 22 N -0.176 5.176 23 C -0.048 4.048 24 C -0.085 4.085 25 Cl 0.002 6.998 26 C 0.066 3.934 27 H 0.057 0.943 28 H 0.032 0.968 29 H 0.074 0.926 30 H 0.095 0.905 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.236 0.764 37 H 0.239 0.761 38 H 0.172 0.828 39 H 0.215 0.785 40 H 0.212 0.788 41 H 0.083 0.917 42 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges 7.592 -7.646 11.967 16.103 hybrid contribution -1.358 0.905 -0.606 1.741 sum 6.234 -6.740 11.361 14.607 Atomic orbital electron populations 1.70179 1.06786 1.25836 1.54506 1.25748 0.95721 1.01297 1.00839 0.85464 0.78710 0.80017 0.77398 1.21830 1.22592 1.18244 1.19393 0.93241 0.85626 1.40934 0.91279 1.44214 1.39378 1.02382 1.46477 1.21086 0.97443 0.86090 0.93923 1.21793 0.97186 0.99446 0.97058 1.21687 0.99260 0.95234 0.99121 1.21064 0.83930 0.95931 0.91494 1.22533 0.96651 0.85968 0.95387 1.86497 1.56102 1.34006 1.61980 1.45681 1.29980 1.26830 1.30079 1.18156 0.84397 0.83411 0.80306 1.90722 1.59003 1.27635 1.64384 1.20451 0.96570 0.96957 0.96493 1.22655 0.95953 0.95244 1.00992 1.23328 0.92929 0.98825 0.90130 1.67787 1.31945 1.05382 1.12464 1.23210 0.89247 0.93183 0.99149 1.22357 0.96519 0.92932 0.96718 1.98408 1.77236 1.37917 1.86218 1.20607 0.88781 0.97277 0.86770 0.94252 0.96765 0.92575 0.90495 0.93136 0.91210 0.90906 0.93017 0.91747 0.76372 0.76099 0.82842 0.78457 0.78842 0.91654 0.97448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.21 11.41 21.65 0.25 -51.96 16 2 C -0.04 -2.05 4.86 84.86 0.41 -1.63 16 3 Si 0.96 41.62 29.59 68.60 2.03 43.65 16 4 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 5 H -0.30 -13.43 7.11 99.48 0.71 -12.72 16 6 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 7 C -0.26 -13.07 9.55 84.03 0.80 -12.27 16 8 H 0.07 3.35 7.89 -2.91 -0.02 3.32 16 9 N -0.60 -27.53 2.88 -699.11 -2.01 -29.55 16 10 C 0.14 5.45 6.52 86.36 0.56 6.01 16 11 C -0.12 -3.80 5.93 30.67 0.18 -3.62 16 12 C -0.11 -3.81 4.48 30.62 0.14 -3.67 16 13 C 0.16 5.94 0.45 3.68 0.00 5.94 16 14 C 0.07 2.47 5.61 71.98 0.40 2.87 16 15 O -0.58 -19.64 13.09 -148.98 -1.95 -21.59 16 16 N -0.68 -23.38 3.89 -425.19 -1.65 -25.03 16 17 C 0.55 18.03 7.20 86.85 0.63 18.66 16 18 O -0.54 -18.84 10.49 -3.78 -0.04 -18.88 16 19 C -0.09 -2.62 5.91 -19.86 -0.12 -2.73 16 20 C -0.13 -3.08 9.61 22.63 0.22 -2.86 16 21 C 0.10 2.12 11.17 84.65 0.95 3.06 16 22 N -0.47 -10.22 10.33 -195.92 -2.02 -12.25 16 23 C 0.11 2.32 10.99 84.73 0.93 3.25 16 24 C -0.06 -1.40 6.38 22.71 0.14 -1.25 16 25 Cl -0.03 -0.70 26.24 -2.72 -0.07 -0.77 16 26 C 0.19 8.63 3.87 86.36 0.33 8.96 16 27 H 0.25 13.75 8.31 -92.71 -0.77 12.98 16 28 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.06 2.13 7.93 -2.39 -0.02 2.12 16 30 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.05 1.72 7.53 -2.38 -0.02 1.71 16 32 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 33 H 0.07 2.43 6.39 -2.39 -0.02 2.41 16 34 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.06 2.15 6.20 -2.38 -0.01 2.14 16 36 H 0.39 9.31 9.12 -74.06 -0.68 8.64 16 37 H 0.40 14.53 6.61 -92.71 -0.61 13.92 16 38 H 0.15 3.64 6.55 -2.91 -0.02 3.62 16 39 H 0.20 2.73 8.06 -2.91 -0.02 2.71 16 40 H 0.19 2.88 8.06 -2.91 -0.02 2.85 16 41 H 0.07 3.39 6.09 -2.39 -0.01 3.37 16 42 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 Total: -1.00 -63.33 351.20 -0.09 -63.43 By element: Atomic # 1 Polarization: 32.45 SS G_CDS: -0.21 Total: 32.24 kcal Atomic # 6 Polarization: 15.13 SS G_CDS: 5.58 Total: 20.71 kcal Atomic # 7 Polarization: -113.35 SS G_CDS: -5.44 Total: -118.79 kcal Atomic # 8 Polarization: -38.48 SS G_CDS: -1.99 Total: -40.47 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -0.07 Total: -0.77 kcal Total: -63.33 -0.09 -63.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672499933.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.333 kcal (2) G-P(sol) polarization free energy of solvation -63.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds