Wall clock time and date at job start Tue Mar 31 2020 22:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86794 * 119.99906 * 2 1 4 4 H 1.48503 * 109.47129 * 239.99843 * 3 2 1 5 5 H 1.48501 * 109.47417 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47152 * 120.00263 * 3 2 1 7 7 C 1.38811 * 119.99833 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99942 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00340 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00243 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47188 * 175.02958 * 10 9 7 12 12 N 1.46500 * 109.54125 * 305.58462 * 11 10 9 13 13 C 1.34780 * 120.00243 * 304.14793 * 12 11 10 14 14 O 1.21553 * 119.99662 * 354.68412 * 13 12 11 15 15 C 1.47839 * 119.99980 * 174.69100 * 13 12 11 16 16 C 1.39562 * 120.55435 * 359.97438 * 15 13 12 17 17 N 1.31660 * 120.59216 * 179.97438 * 16 15 13 18 18 C 1.31948 * 121.89781 * 0.02562 * 17 16 15 19 19 C 1.38430 * 121.05961 * 0.02562 * 18 17 16 20 20 Cl 1.73605 * 120.35793 * 179.97438 * 19 18 17 21 21 C 1.38509 * 119.27674 * 359.97438 * 19 18 17 22 22 C 1.53175 * 109.54654 * 65.76168 * 11 10 9 23 23 C 1.53276 * 109.06483 * 176.85185 * 22 11 10 24 24 O 1.42901 * 109.46102 * 302.44607 * 23 22 11 25 25 C 1.42906 * 114.09751 * 61.16010 * 24 23 22 26 26 C 1.53095 * 109.41392 * 298.84149 * 25 24 23 27 27 H 0.97002 * 120.00275 * 0.02562 * 1 2 3 28 28 H 0.97005 * 119.99916 * 0.02562 * 9 7 2 29 29 H 1.08999 * 109.46555 * 55.02759 * 10 9 7 30 30 H 1.09000 * 109.47050 * 295.02815 * 10 9 7 31 31 H 0.97002 * 119.99861 * 124.14358 * 12 11 10 32 32 H 1.07993 * 119.70321 * 359.71318 * 16 15 13 33 33 H 1.08003 * 119.46901 * 179.97438 * 18 17 16 34 34 H 1.08005 * 120.85654 * 180.02562 * 21 19 18 35 35 H 1.09000 * 109.52291 * 296.84810 * 22 11 10 36 36 H 1.09006 * 109.51885 * 57.03153 * 22 11 10 37 37 H 1.09003 * 109.45796 * 182.45181 * 23 22 11 38 38 H 1.09002 * 109.46702 * 62.45250 * 23 22 11 39 39 H 1.09002 * 109.47855 * 178.85900 * 25 24 23 40 40 H 1.09000 * 109.48874 * 58.82912 * 25 24 23 41 41 H 1.08997 * 109.51709 * 297.70376 * 26 25 24 42 42 H 1.08994 * 109.57152 * 177.54554 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0016 10 6 2.0581 -3.6568 0.0016 11 6 1.0686 -4.8170 0.1279 12 7 0.2271 -4.6168 1.3102 13 6 0.7948 -4.4522 2.5215 14 8 1.9983 -4.5658 2.6491 15 6 -0.0462 -4.1336 3.6949 16 6 -1.4289 -4.0001 3.5614 17 7 -2.1787 -3.7169 4.6060 18 6 -1.6634 -3.5484 5.8090 19 6 -0.3008 -3.6629 6.0247 20 17 0.3578 -3.4368 7.6150 21 6 0.5313 -3.9597 4.9579 22 6 0.1877 -4.8777 -1.1237 23 6 -0.7450 -6.0897 -1.0212 24 8 0.0337 -7.2778 -0.8658 25 6 0.8420 -7.2957 0.3126 26 6 1.8383 -6.1343 0.2638 27 1 -0.4851 0.8400 -0.0004 28 1 0.3555 -2.3881 0.0016 29 1 2.7505 -3.6765 0.8432 30 1 2.6155 -3.7545 -0.9300 31 1 -0.7387 -4.6027 1.2213 32 1 -1.8876 -4.1262 2.5919 33 1 -2.3150 -3.3166 6.6385 34 1 1.5981 -4.0554 5.0974 35 1 -0.4040 -3.9652 -1.1974 36 1 0.8174 -4.9769 -2.0079 37 1 -1.3447 -6.1643 -1.9284 38 1 -1.4022 -5.9705 -0.1598 39 1 1.3856 -8.2390 0.3662 40 1 0.2059 -7.1923 1.1916 41 1 2.5012 -6.2589 -0.5923 42 1 2.4268 -6.1194 1.1811 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673747552.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:28 Heat of formation + Delta-G solvation = -55.605085 kcal Electronic energy + Delta-G solvation = -28140.680134 eV Core-core repulsion = 24146.235201 eV Total energy + Delta-G solvation = -3994.444933 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.12847 -41.07565 -39.38598 -37.76230 -37.24678 -35.53552 -33.98195 -33.41907 -32.48817 -32.06386 -31.60264 -28.20514 -26.08493 -25.36071 -24.79865 -24.56700 -23.08663 -22.27018 -20.45443 -19.47890 -19.27742 -18.01384 -17.81915 -17.11970 -16.99075 -16.82825 -16.52447 -16.31425 -16.21007 -15.60327 -15.38775 -15.23532 -15.08498 -14.87062 -14.41652 -14.21800 -13.86791 -13.71421 -13.62849 -13.24554 -13.16011 -13.04215 -12.84160 -12.77160 -12.35231 -12.30949 -12.16477 -11.97033 -11.75708 -11.46285 -11.16971 -11.04051 -10.94525 -10.64773 -10.50822 -10.18624 -9.95282 -8.96110 -7.96481 -5.21957 -0.60329 -0.17549 0.82095 1.43519 1.45004 1.51042 1.69375 2.03788 2.53400 2.61230 2.97391 3.13008 3.36648 3.51260 3.51496 3.60168 3.62313 3.77316 3.85746 3.87597 4.00468 4.16025 4.25297 4.30067 4.44968 4.60341 4.68487 4.74050 4.76252 4.80620 4.86274 4.87681 5.05740 5.11071 5.16445 5.16809 5.21046 5.46043 5.55999 6.25898 6.26119 6.45808 6.54608 7.14115 7.34422 8.07433 8.36348 9.25788 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.007131 B = 0.005222 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3925.641464 B = 5360.713363 C = 8084.174557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.064 4.064 3 Si 0.962 3.038 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.287 1.287 7 C -0.242 4.242 8 H 0.061 0.939 9 N -0.727 5.727 10 C 0.143 3.857 11 C 0.181 3.819 12 N -0.696 5.696 13 C 0.572 3.428 14 O -0.555 6.555 15 C -0.180 4.180 16 C 0.143 3.857 17 N -0.480 5.480 18 C 0.139 3.861 19 C -0.098 4.098 20 Cl -0.037 7.037 21 C -0.019 4.019 22 C -0.149 4.149 23 C 0.064 3.936 24 O -0.391 6.391 25 C 0.071 3.929 26 C -0.157 4.157 27 H 0.251 0.749 28 H 0.378 0.622 29 H 0.026 0.974 30 H 0.020 0.980 31 H 0.406 0.594 32 H 0.184 0.816 33 H 0.200 0.800 34 H 0.150 0.850 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.116 0.884 38 H 0.063 0.937 39 H 0.109 0.891 40 H 0.052 0.948 41 H 0.081 0.919 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.498 -14.902 8.303 17.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.610 5.610 2 C -0.257 4.257 3 Si 0.792 3.208 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.214 1.214 7 C -0.374 4.374 8 H 0.079 0.921 9 N -0.370 5.370 10 C 0.015 3.985 11 C 0.095 3.905 12 N -0.348 5.348 13 C 0.358 3.642 14 O -0.435 6.435 15 C -0.185 4.185 16 C -0.015 4.015 17 N -0.188 5.188 18 C -0.019 4.019 19 C -0.127 4.127 20 Cl -0.009 7.009 21 C -0.046 4.046 22 C -0.187 4.187 23 C -0.013 4.013 24 O -0.310 6.310 25 C -0.006 4.006 26 C -0.196 4.196 27 H 0.060 0.940 28 H 0.212 0.788 29 H 0.044 0.956 30 H 0.037 0.963 31 H 0.244 0.756 32 H 0.201 0.799 33 H 0.217 0.783 34 H 0.168 0.832 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.134 0.866 38 H 0.081 0.919 39 H 0.127 0.873 40 H 0.071 0.929 41 H 0.100 0.900 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.343 -14.915 8.249 17.862 hybrid contribution 1.105 1.664 0.350 2.028 sum -4.237 -13.251 8.599 16.355 Atomic orbital electron populations 1.69741 1.05972 1.25921 1.59351 1.25331 0.96375 1.00231 1.03791 0.85387 0.77439 0.80127 0.77868 1.20510 1.21736 1.21362 1.19437 0.91028 0.85656 1.41317 0.92055 1.42222 1.05431 1.00163 1.89198 1.21123 0.94250 0.85278 0.97827 1.20502 0.91028 0.94280 0.84708 1.45725 1.10395 1.72772 1.05936 1.17972 0.87057 0.75997 0.83132 1.90704 1.15592 1.51610 1.85544 1.21015 0.95783 1.07231 0.94471 1.23363 0.88831 0.90416 0.98843 1.67930 1.39086 1.12560 0.99229 1.23507 0.91205 0.91395 0.95783 1.22003 0.95177 1.06995 0.88496 1.98393 1.85900 1.95366 1.21196 1.21709 1.01561 0.91160 0.90156 1.22421 0.99484 1.00286 0.96507 1.22736 0.92181 0.83006 1.03369 1.87913 1.59512 1.39384 1.44197 1.22537 0.92102 0.98453 0.87471 1.22490 0.99306 0.93725 1.04068 0.94027 0.78836 0.95647 0.96256 0.75596 0.79939 0.78336 0.83196 0.90449 0.89685 0.86636 0.91863 0.87333 0.92935 0.90005 0.90275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.70 13.06 21.65 0.28 -56.42 16 2 C -0.06 -3.67 5.50 84.86 0.47 -3.20 16 3 Si 0.96 46.67 29.55 68.60 2.03 48.70 16 4 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 5 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 6 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 7 C -0.24 -13.67 9.99 84.03 0.84 -12.83 16 8 H 0.06 3.47 7.83 -2.91 -0.02 3.44 16 9 N -0.73 -35.82 5.21 -343.45 -1.79 -37.61 16 10 C 0.14 5.89 4.79 86.38 0.41 6.30 16 11 C 0.18 5.48 0.32 3.72 0.00 5.48 16 12 N -0.70 -19.74 3.70 -425.23 -1.57 -21.32 16 13 C 0.57 18.65 7.19 86.78 0.62 19.28 16 14 O -0.56 -21.62 12.72 -3.88 -0.05 -21.67 16 15 C -0.18 -5.12 5.89 -20.00 -0.12 -5.24 16 16 C 0.14 3.54 10.71 85.04 0.91 4.45 16 17 N -0.48 -11.59 10.34 -194.67 -2.01 -13.60 16 18 C 0.14 2.90 10.97 84.72 0.93 3.83 16 19 C -0.10 -2.23 6.34 22.38 0.14 -2.09 16 20 Cl -0.04 -0.74 28.99 -2.72 -0.08 -0.82 16 21 C -0.02 -0.51 9.52 22.75 0.22 -0.30 16 22 C -0.15 -3.92 4.84 30.75 0.15 -3.77 16 23 C 0.06 1.28 6.67 72.07 0.48 1.76 16 24 O -0.39 -8.94 10.77 -148.98 -1.60 -10.55 16 25 C 0.07 1.54 6.68 72.01 0.48 2.02 16 26 C -0.16 -4.19 4.82 30.68 0.15 -4.04 16 27 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 28 H 0.38 18.89 6.51 -92.70 -0.60 18.28 16 29 H 0.03 1.19 6.25 -2.39 -0.01 1.18 16 30 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.41 9.32 5.49 -92.71 -0.51 8.81 16 32 H 0.18 3.58 6.44 -2.91 -0.02 3.57 16 33 H 0.20 2.78 8.06 -2.91 -0.02 2.76 16 34 H 0.15 4.21 7.74 -2.91 -0.02 4.19 16 35 H 0.08 2.29 7.22 -2.39 -0.02 2.27 16 36 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 37 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.06 1.07 7.01 -2.39 -0.02 1.05 16 39 H 0.11 1.97 8.14 -2.39 -0.02 1.96 16 40 H 0.05 1.09 7.75 -2.39 -0.02 1.07 16 41 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.08 2.40 6.26 -2.39 -0.01 2.38 16 Total: -1.00 -69.54 355.45 0.86 -68.68 By element: Atomic # 1 Polarization: 33.00 SS G_CDS: -0.03 Total: 32.97 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: 5.68 Total: 11.64 kcal Atomic # 7 Polarization: -123.85 SS G_CDS: -5.10 Total: -128.95 kcal Atomic # 8 Polarization: -30.57 SS G_CDS: -1.65 Total: -32.22 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -0.08 Total: -0.82 kcal Total: -69.54 0.86 -68.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673747552.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.075 kcal (2) G-P(sol) polarization free energy of solvation -69.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds