Wall clock time and date at job start Tue Mar 31 2020 22:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86806 * 120.00043 * 2 1 4 4 H 1.48502 * 109.47145 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47163 * 299.99677 * 3 2 1 6 6 H 1.48500 * 109.46996 * 60.00263 * 3 2 1 7 7 C 1.38810 * 120.00303 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00762 * 195.08822 * 7 2 1 9 9 N 1.36946 * 119.99635 * 15.09229 * 7 2 1 10 10 C 1.46923 * 120.62832 * 210.25070 * 9 7 2 11 11 C 1.53195 * 108.77258 * 233.62947 * 10 9 7 12 12 C 1.53048 * 109.31212 * 305.36546 * 11 10 9 13 13 C 1.53000 * 109.45981 * 181.38864 * 12 11 10 14 14 O 1.42897 * 109.46891 * 174.74053 * 13 12 11 15 15 N 1.46503 * 109.45684 * 301.36020 * 12 11 10 16 16 C 1.34773 * 120.00059 * 294.96910 * 15 12 11 17 17 O 1.21553 * 119.99855 * 5.25825 * 16 15 12 18 18 C 1.47847 * 120.00154 * 185.25755 * 16 15 12 19 19 C 1.39552 * 120.55108 * 0.02562 * 18 16 15 20 20 N 1.31664 * 120.59495 * 179.97438 * 19 18 16 21 21 C 1.31945 * 121.89387 * 0.02562 * 20 19 18 22 22 C 1.38429 * 121.05924 * 359.97438 * 21 20 19 23 23 Cl 1.73605 * 120.35536 * 180.02562 * 22 21 20 24 24 C 1.38508 * 119.28185 * 359.78655 * 22 21 20 25 25 C 1.53043 * 109.53819 * 61.36583 * 12 11 10 26 26 C 1.46922 * 120.62809 * 30.27084 * 9 7 2 27 27 H 0.97006 * 119.99494 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.58753 * 113.84228 * 10 9 7 29 29 H 1.09002 * 109.70344 * 353.48353 * 10 9 7 30 30 H 1.09004 * 109.49820 * 185.41847 * 11 10 9 31 31 H 1.08993 * 109.49898 * 65.31453 * 11 10 9 32 32 H 1.09004 * 109.47142 * 54.73532 * 13 12 11 33 33 H 1.09004 * 109.47054 * 294.73638 * 13 12 11 34 34 H 0.96705 * 113.99503 * 179.97438 * 14 13 12 35 35 H 0.96997 * 119.99787 * 114.97457 * 15 12 11 36 36 H 1.08008 * 119.70291 * 359.95427 * 19 18 16 37 37 H 1.08000 * 119.46873 * 179.97438 * 21 20 19 38 38 H 1.08000 * 120.86179 * 180.25405 * 24 22 21 39 39 H 1.09002 * 109.49518 * 58.58343 * 25 12 11 40 40 H 1.08998 * 109.49365 * 178.68587 * 25 12 11 41 41 H 1.08999 * 109.58819 * 246.15529 * 26 9 7 42 42 H 1.08996 * 109.59351 * 6.58117 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0623 -1.2182 0.2440 9 7 1.3609 -2.3678 -0.3078 10 6 1.7919 -3.6429 0.2811 11 6 2.0414 -4.6480 -0.8478 12 6 0.7883 -4.7502 -1.7206 13 6 1.0217 -5.7789 -2.8289 14 8 -0.1868 -5.9645 -3.5685 15 7 -0.3476 -5.1702 -0.8962 16 6 -0.3516 -6.3914 -0.3263 17 8 0.6266 -7.1073 -0.4163 18 6 -1.5459 -6.8605 0.4084 19 6 -2.6753 -6.0483 0.5184 20 7 -3.7395 -6.4653 1.1720 21 6 -3.7848 -7.6531 1.7447 22 6 -2.7060 -8.5182 1.6812 23 17 -2.7856 -10.0772 2.4409 24 6 -1.5642 -8.1285 1.0008 25 6 0.4875 -3.3862 -2.3460 26 6 0.2204 -2.3669 -1.2340 27 1 -0.4850 0.8401 -0.0004 28 1 1.0126 -4.0220 0.9422 29 1 2.7112 -3.4941 0.8476 30 1 2.2685 -5.6251 -0.4214 31 1 2.8814 -4.3115 -1.4554 32 1 1.3262 -6.7273 -2.3862 33 1 1.8053 -5.4216 -3.4971 34 1 -0.1123 -6.6047 -4.2894 35 1 -1.0968 -4.5692 -0.7607 36 1 -2.6765 -5.0687 0.0635 37 1 -4.6779 -7.9553 2.2715 38 1 -0.7092 -8.7847 0.9318 39 1 1.3422 -3.0616 -2.9394 40 1 -0.3914 -3.4653 -2.9858 41 1 -0.6870 -2.6419 -0.6965 42 1 0.1034 -1.3742 -1.6687 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674324672.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:21 Heat of formation + Delta-G solvation = -26.744373 kcal Electronic energy + Delta-G solvation = -28011.322207 eV Core-core repulsion = 24018.128768 eV Total energy + Delta-G solvation = -3993.193439 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.94144 -39.78050 -37.55014 -36.94980 -36.15943 -34.18541 -32.87466 -32.37497 -31.26238 -30.22004 -29.85294 -26.77024 -24.97017 -23.92814 -23.83701 -22.39498 -21.45959 -20.58321 -18.88008 -18.35814 -17.19167 -17.04134 -16.94130 -16.53915 -15.58845 -15.22298 -15.09382 -14.83484 -14.46283 -14.26256 -13.95957 -13.68638 -13.49570 -13.33532 -13.13868 -12.88974 -12.68783 -12.51877 -12.32159 -11.85161 -11.55792 -11.51709 -11.29847 -11.01911 -10.79468 -10.46306 -10.42347 -10.28251 -10.12218 -10.04693 -9.86708 -9.78148 -9.63029 -9.30189 -9.19950 -8.73373 -8.52152 -6.68879 -5.83987 -3.28633 0.31784 0.73533 1.64816 2.78536 3.22146 3.34237 3.42677 3.44492 3.59075 4.01481 4.35793 4.37809 4.45985 4.50707 4.58330 4.81599 5.00501 5.25554 5.30575 5.36518 5.49173 5.54467 5.57579 5.65035 5.71382 5.90629 6.01656 6.04665 6.19395 6.24740 6.49290 6.49559 6.58112 6.74040 6.84302 6.94233 7.21583 7.44717 7.52363 7.70167 7.73884 7.77332 8.31192 8.41591 9.16874 9.78998 10.36733 11.24633 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.014945 B = 0.003195 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.132454 B = 8761.406509 C = 9629.434485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.005 3.995 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.253 4.253 8 H 0.065 0.935 9 N -0.591 5.591 10 C 0.152 3.848 11 C -0.143 4.143 12 C 0.194 3.806 13 C 0.062 3.938 14 O -0.567 6.567 15 N -0.688 5.688 16 C 0.568 3.432 17 O -0.539 6.539 18 C -0.165 4.165 19 C 0.142 3.858 20 N -0.468 5.468 21 C 0.132 3.868 22 C -0.100 4.100 23 Cl -0.051 7.051 24 C -0.011 4.011 25 C -0.144 4.144 26 C 0.173 3.827 27 H 0.253 0.747 28 H 0.016 0.984 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.048 0.952 34 H 0.371 0.629 35 H 0.402 0.598 36 H 0.169 0.831 37 H 0.169 0.831 38 H 0.157 0.843 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.016 0.984 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.435 -17.056 -1.842 17.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.194 4.194 3 Si 0.732 3.268 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.383 4.383 8 H 0.083 0.917 9 N -0.314 5.314 10 C 0.025 3.975 11 C -0.183 4.183 12 C 0.108 3.892 13 C -0.017 4.017 14 O -0.371 6.371 15 N -0.339 5.339 16 C 0.353 3.647 17 O -0.419 6.419 18 C -0.170 4.170 19 C -0.016 4.016 20 N -0.176 5.176 21 C -0.026 4.026 22 C -0.129 4.129 23 Cl -0.023 7.023 24 C -0.038 4.038 25 C -0.183 4.183 26 C 0.047 3.953 27 H 0.064 0.936 28 H 0.034 0.966 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.066 0.934 34 H 0.217 0.783 35 H 0.239 0.761 36 H 0.186 0.814 37 H 0.186 0.814 38 H 0.175 0.825 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.034 0.966 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.780 -16.511 -1.364 17.547 hybrid contribution 0.971 0.081 -0.304 1.021 sum -4.809 -16.430 -1.668 17.201 Atomic orbital electron populations 1.70002 1.05235 1.25455 1.53959 1.25093 0.95330 0.98415 1.00564 0.86231 0.79387 0.83915 0.77270 1.20263 1.21557 1.21712 1.19212 0.91981 0.84431 1.42682 0.91741 1.44039 1.35983 1.02342 1.48990 1.20805 0.97719 0.86495 0.92441 1.22401 0.95731 1.00993 0.99223 1.20374 0.86359 0.93915 0.88520 1.22746 0.86327 0.99753 0.92847 1.86478 1.35387 1.66005 1.49231 1.45869 1.22924 1.15306 1.49791 1.17743 0.86160 0.82028 0.78731 1.90691 1.34353 1.56038 1.60770 1.21149 0.97058 0.95920 1.02869 1.23239 0.87162 0.99140 0.92052 1.67890 1.26907 1.14449 1.08368 1.23024 0.96911 0.88223 0.94452 1.22000 0.97616 0.90462 1.02813 1.98390 1.98394 1.25409 1.80057 1.21637 0.96846 0.94796 0.90479 1.22484 1.01911 0.93776 1.00139 1.20741 0.88752 0.97685 0.88159 0.93648 0.96615 0.92729 0.90858 0.91399 0.91645 0.93353 0.78339 0.76119 0.81406 0.81390 0.82505 0.91060 0.91728 0.96637 0.89267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.14 11.24 55.49 0.62 -24.51 16 2 C 0.00 0.13 4.95 -17.43 -0.09 0.04 16 3 Si 0.90 21.19 29.58 -169.99 -5.03 16.16 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 7 C -0.25 -6.72 9.57 -15.06 -0.14 -6.87 16 8 H 0.06 1.70 7.87 -52.49 -0.41 1.29 16 9 N -0.59 -14.04 2.98 -172.32 -0.51 -14.55 16 10 C 0.15 3.14 6.25 -3.71 -0.02 3.12 16 11 C -0.14 -2.52 4.74 -26.61 -0.13 -2.65 16 12 C 0.19 3.15 0.44 -131.77 -0.06 3.09 16 13 C 0.06 0.88 5.54 37.16 0.21 1.09 16 14 O -0.57 -7.56 12.94 -35.23 -0.46 -8.02 16 15 N -0.69 -10.59 3.85 -48.49 -0.19 -10.78 16 16 C 0.57 8.63 7.19 -12.33 -0.09 8.55 16 17 O -0.54 -9.17 12.73 5.32 0.07 -9.10 16 18 C -0.16 -2.15 5.89 -104.83 -0.62 -2.77 16 19 C 0.14 1.77 10.71 -17.13 -0.18 1.58 16 20 N -0.47 -5.74 10.34 -12.88 -0.13 -5.87 16 21 C 0.13 1.35 10.97 -17.43 -0.19 1.16 16 22 C -0.10 -1.04 6.34 -39.41 -0.25 -1.29 16 23 Cl -0.05 -0.46 28.98 -51.86 -1.50 -1.97 16 24 C -0.01 -0.12 9.52 -38.83 -0.37 -0.49 16 25 C -0.14 -2.55 4.89 -26.61 -0.13 -2.68 16 26 C 0.17 3.78 5.00 -3.71 -0.02 3.77 16 27 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 28 H 0.02 0.34 7.74 -51.93 -0.40 -0.06 16 29 H 0.05 1.13 7.94 -51.93 -0.41 0.72 16 30 H 0.07 1.28 6.40 -51.93 -0.33 0.95 16 31 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.07 0.99 6.17 -51.93 -0.32 0.67 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.37 3.31 9.12 45.56 0.42 3.72 16 35 H 0.40 5.98 5.21 -40.82 -0.21 5.77 16 36 H 0.17 1.91 6.44 -52.48 -0.34 1.57 16 37 H 0.17 1.25 8.06 -52.49 -0.42 0.83 16 38 H 0.16 1.78 7.74 -52.49 -0.41 1.38 16 39 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.06 1.09 7.79 -51.93 -0.40 0.68 16 41 H 0.02 0.35 6.84 -51.93 -0.36 -0.01 16 42 H 0.09 2.23 6.17 -51.93 -0.32 1.91 16 LS Contribution 352.18 15.07 5.31 5.31 Total: -1.00 -30.58 352.18 -8.23 -38.81 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -4.33 Total: 8.88 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: -2.08 Total: 5.65 kcal Atomic # 7 Polarization: -55.51 SS G_CDS: -0.21 Total: -55.72 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: -0.39 Total: -17.12 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.16 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -1.50 Total: -1.97 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.58 -8.23 -38.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674324672.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.066 kcal (2) G-P(sol) polarization free energy of solvation -30.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds