Wall clock time and date at job start Tue Mar 31 2020 22:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86806 * 120.00043 * 2 1 4 4 H 1.48502 * 109.47145 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47163 * 299.99677 * 3 2 1 6 6 H 1.48500 * 109.46996 * 60.00263 * 3 2 1 7 7 C 1.38810 * 120.00303 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00762 * 195.08822 * 7 2 1 9 9 N 1.36946 * 119.99635 * 15.09229 * 7 2 1 10 10 C 1.46923 * 120.62832 * 210.25070 * 9 7 2 11 11 C 1.53195 * 108.77258 * 233.62947 * 10 9 7 12 12 C 1.53048 * 109.31212 * 305.36546 * 11 10 9 13 13 C 1.53000 * 109.45981 * 181.38864 * 12 11 10 14 14 O 1.42897 * 109.46891 * 174.74053 * 13 12 11 15 15 N 1.46503 * 109.45684 * 301.36020 * 12 11 10 16 16 C 1.34773 * 120.00059 * 294.96910 * 15 12 11 17 17 O 1.21553 * 119.99855 * 5.25825 * 16 15 12 18 18 C 1.47847 * 120.00154 * 185.25755 * 16 15 12 19 19 C 1.39552 * 120.55108 * 0.02562 * 18 16 15 20 20 N 1.31664 * 120.59495 * 179.97438 * 19 18 16 21 21 C 1.31945 * 121.89387 * 0.02562 * 20 19 18 22 22 C 1.38429 * 121.05924 * 359.97438 * 21 20 19 23 23 Cl 1.73605 * 120.35536 * 180.02562 * 22 21 20 24 24 C 1.38508 * 119.28185 * 359.78655 * 22 21 20 25 25 C 1.53043 * 109.53819 * 61.36583 * 12 11 10 26 26 C 1.46922 * 120.62809 * 30.27084 * 9 7 2 27 27 H 0.97006 * 119.99494 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.58753 * 113.84228 * 10 9 7 29 29 H 1.09002 * 109.70344 * 353.48353 * 10 9 7 30 30 H 1.09004 * 109.49820 * 185.41847 * 11 10 9 31 31 H 1.08993 * 109.49898 * 65.31453 * 11 10 9 32 32 H 1.09004 * 109.47142 * 54.73532 * 13 12 11 33 33 H 1.09004 * 109.47054 * 294.73638 * 13 12 11 34 34 H 0.96705 * 113.99503 * 179.97438 * 14 13 12 35 35 H 0.96997 * 119.99787 * 114.97457 * 15 12 11 36 36 H 1.08008 * 119.70291 * 359.95427 * 19 18 16 37 37 H 1.08000 * 119.46873 * 179.97438 * 21 20 19 38 38 H 1.08000 * 120.86179 * 180.25405 * 24 22 21 39 39 H 1.09002 * 109.49518 * 58.58343 * 25 12 11 40 40 H 1.08998 * 109.49365 * 178.68587 * 25 12 11 41 41 H 1.08999 * 109.58819 * 246.15529 * 26 9 7 42 42 H 1.08996 * 109.59351 * 6.58117 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0623 -1.2182 0.2440 9 7 1.3609 -2.3678 -0.3078 10 6 1.7919 -3.6429 0.2811 11 6 2.0414 -4.6480 -0.8478 12 6 0.7883 -4.7502 -1.7206 13 6 1.0217 -5.7789 -2.8289 14 8 -0.1868 -5.9645 -3.5685 15 7 -0.3476 -5.1702 -0.8962 16 6 -0.3516 -6.3914 -0.3263 17 8 0.6266 -7.1073 -0.4163 18 6 -1.5459 -6.8605 0.4084 19 6 -2.6753 -6.0483 0.5184 20 7 -3.7395 -6.4653 1.1720 21 6 -3.7848 -7.6531 1.7447 22 6 -2.7060 -8.5182 1.6812 23 17 -2.7856 -10.0772 2.4409 24 6 -1.5642 -8.1285 1.0008 25 6 0.4875 -3.3862 -2.3460 26 6 0.2204 -2.3669 -1.2340 27 1 -0.4850 0.8401 -0.0004 28 1 1.0126 -4.0220 0.9422 29 1 2.7112 -3.4941 0.8476 30 1 2.2685 -5.6251 -0.4214 31 1 2.8814 -4.3115 -1.4554 32 1 1.3262 -6.7273 -2.3862 33 1 1.8053 -5.4216 -3.4971 34 1 -0.1123 -6.6047 -4.2894 35 1 -1.0968 -4.5692 -0.7607 36 1 -2.6765 -5.0687 0.0635 37 1 -4.6779 -7.9553 2.2715 38 1 -0.7092 -8.7847 0.9318 39 1 1.3422 -3.0616 -2.9394 40 1 -0.3914 -3.4653 -2.9858 41 1 -0.6870 -2.6419 -0.6965 42 1 0.1034 -1.3742 -1.6687 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674324672.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:20 Heat of formation + Delta-G solvation = -47.979594 kcal Electronic energy + Delta-G solvation = -28012.243035 eV Core-core repulsion = 24018.128768 eV Total energy + Delta-G solvation = -3994.114267 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.02771 -40.90672 -38.89897 -37.74787 -37.42068 -35.68451 -34.07269 -33.59110 -32.64507 -31.72330 -31.29588 -28.36315 -25.96676 -25.60974 -24.78548 -23.98657 -22.80054 -21.99662 -20.28042 -19.46864 -18.75215 -18.11441 -17.98224 -17.64175 -16.84336 -16.60976 -16.36665 -16.27393 -15.77644 -15.43222 -15.37316 -15.14800 -14.85444 -14.61299 -14.37375 -14.28993 -13.95463 -13.67957 -13.27395 -13.20992 -13.13836 -13.01050 -12.63799 -12.59207 -12.32876 -12.21978 -11.99280 -11.83108 -11.56388 -11.44895 -11.17850 -11.03300 -10.84510 -10.55147 -10.41688 -10.19311 -9.96724 -8.62882 -7.86597 -5.33706 -0.60990 -0.17172 0.83066 1.46857 1.49784 1.59149 1.72012 2.06070 2.51914 2.59606 3.12179 3.26269 3.32228 3.51522 3.52751 3.61621 3.70430 3.88155 3.90458 3.99263 4.16251 4.29493 4.45374 4.54792 4.65151 4.65840 4.71148 4.73249 4.75471 4.91404 5.01683 5.10214 5.16980 5.19973 5.27598 5.45726 5.58145 5.65867 5.73603 6.41468 6.49601 6.56161 6.90720 7.11860 7.17462 7.86032 8.38902 9.19317 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.014945 B = 0.003195 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.132454 B = 8761.406509 C = 9629.434485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.043 4.043 3 Si 0.963 3.037 4 H -0.270 1.270 5 H -0.289 1.289 6 H -0.294 1.294 7 C -0.264 4.264 8 H 0.061 0.939 9 N -0.605 5.605 10 C 0.153 3.847 11 C -0.131 4.131 12 C 0.193 3.807 13 C 0.073 3.927 14 O -0.577 6.577 15 N -0.690 5.690 16 C 0.569 3.431 17 O -0.560 6.560 18 C -0.178 4.178 19 C 0.140 3.860 20 N -0.484 5.484 21 C 0.139 3.861 22 C -0.097 4.097 23 Cl -0.035 7.035 24 C -0.012 4.012 25 C -0.126 4.126 26 C 0.180 3.820 27 H 0.250 0.750 28 H 0.008 0.992 29 H 0.048 0.952 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.392 0.608 35 H 0.403 0.597 36 H 0.172 0.828 37 H 0.199 0.801 38 H 0.159 0.841 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.007 0.993 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.678 -18.430 -2.173 19.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.239 4.239 3 Si 0.792 3.208 4 H -0.194 1.194 5 H -0.216 1.216 6 H -0.221 1.221 7 C -0.394 4.394 8 H 0.079 0.921 9 N -0.329 5.329 10 C 0.027 3.973 11 C -0.171 4.171 12 C 0.108 3.892 13 C -0.005 4.005 14 O -0.384 6.384 15 N -0.340 5.340 16 C 0.356 3.644 17 O -0.440 6.440 18 C -0.184 4.184 19 C -0.018 4.018 20 N -0.192 5.192 21 C -0.019 4.019 22 C -0.126 4.126 23 Cl -0.006 7.006 24 C -0.039 4.039 25 C -0.166 4.166 26 C 0.055 3.945 27 H 0.059 0.941 28 H 0.026 0.974 29 H 0.066 0.934 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.241 0.759 35 H 0.240 0.760 36 H 0.189 0.811 37 H 0.216 0.784 38 H 0.177 0.823 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.025 0.975 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.020 -17.920 -1.714 18.981 hybrid contribution 0.991 0.407 -0.128 1.079 sum -5.029 -17.513 -1.842 18.313 Atomic orbital electron populations 1.70135 1.06383 1.25756 1.55137 1.25760 0.96075 1.01164 1.00902 0.85276 0.78607 0.80201 0.76740 1.19408 1.21555 1.22116 1.19470 0.92122 0.85704 1.42144 0.92089 1.44243 1.36225 1.02621 1.49783 1.20834 0.96945 0.86039 0.93447 1.22220 0.96674 0.99859 0.98306 1.20300 0.85971 0.93823 0.89150 1.22499 0.86996 0.98563 0.92463 1.86422 1.34900 1.67000 1.50090 1.45845 1.22679 1.15582 1.49906 1.17979 0.86513 0.81542 0.78340 1.90671 1.35253 1.56479 1.61616 1.20970 0.96548 0.96807 1.04050 1.23294 0.87129 0.99280 0.92095 1.67940 1.26828 1.15504 1.08973 1.23523 0.97719 0.87319 0.93304 1.22004 0.97092 0.91159 1.02329 1.98400 1.98326 1.24225 1.79638 1.21716 0.97459 0.94346 0.90361 1.22238 1.02362 0.93347 0.98608 1.20560 0.88026 0.97122 0.88812 0.94066 0.97429 0.93382 0.90496 0.91027 0.92217 0.91901 0.75880 0.75991 0.81116 0.78441 0.82319 0.91184 0.90464 0.97487 0.92660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.78 11.24 21.65 0.24 -52.53 16 2 C -0.04 -2.33 4.95 84.86 0.42 -1.91 16 3 Si 0.96 43.99 29.58 68.60 2.03 46.02 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 5 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 6 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 7 C -0.26 -14.18 9.57 84.03 0.80 -13.38 16 8 H 0.06 3.25 7.87 -2.91 -0.02 3.23 16 9 N -0.61 -29.14 2.98 -699.11 -2.09 -31.23 16 10 C 0.15 6.37 6.25 86.36 0.54 6.91 16 11 C -0.13 -4.50 4.74 30.68 0.15 -4.35 16 12 C 0.19 6.09 0.44 3.63 0.00 6.09 16 13 C 0.07 1.95 5.54 71.98 0.40 2.35 16 14 O -0.58 -14.05 12.94 -148.98 -1.93 -15.98 16 15 N -0.69 -20.88 3.85 -425.62 -1.64 -22.51 16 16 C 0.57 16.98 7.19 86.79 0.62 17.60 16 17 O -0.56 -18.59 12.73 -3.88 -0.05 -18.64 16 18 C -0.18 -4.55 5.89 -20.00 -0.12 -4.67 16 19 C 0.14 3.39 10.71 85.04 0.91 4.30 16 20 N -0.48 -11.25 10.34 -194.67 -2.01 -13.26 16 21 C 0.14 2.57 10.97 84.72 0.93 3.50 16 22 C -0.10 -1.84 6.34 22.38 0.14 -1.70 16 23 Cl -0.03 -0.55 28.98 -2.72 -0.08 -0.63 16 24 C -0.01 -0.27 9.52 22.75 0.22 -0.05 16 25 C -0.13 -4.39 4.89 30.67 0.15 -4.24 16 26 C 0.18 8.03 5.00 86.36 0.43 8.47 16 27 H 0.25 13.81 8.31 -92.70 -0.77 13.04 16 28 H 0.01 0.33 7.74 -2.39 -0.02 0.32 16 29 H 0.05 2.02 7.94 -2.39 -0.02 2.00 16 30 H 0.08 2.62 6.40 -2.38 -0.02 2.61 16 31 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 32 H 0.06 1.70 6.17 -2.39 -0.01 1.68 16 33 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.39 5.93 9.12 -74.05 -0.68 5.25 16 35 H 0.40 11.98 5.21 -92.71 -0.48 11.50 16 36 H 0.17 3.89 6.44 -2.91 -0.02 3.87 16 37 H 0.20 2.35 8.06 -2.91 -0.02 2.32 16 38 H 0.16 3.45 7.74 -2.91 -0.02 3.43 16 39 H 0.07 2.46 8.14 -2.39 -0.02 2.45 16 40 H 0.08 2.51 7.79 -2.39 -0.02 2.49 16 41 H 0.01 0.33 6.84 -2.39 -0.02 0.31 16 42 H 0.05 2.84 6.17 -2.39 -0.01 2.83 16 Total: -1.00 -65.00 352.18 0.00 -65.00 By element: Atomic # 1 Polarization: 24.92 SS G_CDS: -0.07 Total: 24.85 kcal Atomic # 6 Polarization: 13.33 SS G_CDS: 5.60 Total: 18.92 kcal Atomic # 7 Polarization: -114.04 SS G_CDS: -5.50 Total: -119.54 kcal Atomic # 8 Polarization: -32.64 SS G_CDS: -1.98 Total: -34.62 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -0.08 Total: -0.63 kcal Total: -65.00 0.00 -65.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674324672.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.017 kcal (2) G-P(sol) polarization free energy of solvation -65.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds