Wall clock time and date at job start Tue Mar 31 2020 22:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86804 * 119.99196 * 2 1 4 4 H 1.48501 * 109.46823 * 239.99597 * 3 2 1 5 5 H 1.48494 * 109.47629 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46767 * 120.00326 * 3 2 1 7 7 C 1.38808 * 120.00552 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00061 * 167.79816 * 7 2 1 9 9 N 1.36942 * 119.99939 * 347.80478 * 7 2 1 10 10 C 1.46923 * 120.63134 * 149.10646 * 9 7 2 11 11 C 1.53186 * 108.77406 * 126.41022 * 10 9 7 12 12 C 1.53036 * 109.31500 * 54.63583 * 11 10 9 13 13 C 1.53045 * 109.53730 * 298.63315 * 12 11 10 14 14 C 1.53002 * 109.49661 * 181.31366 * 13 12 11 15 15 O 1.42904 * 109.46828 * 174.69266 * 14 13 12 16 16 N 1.46497 * 109.49730 * 301.37930 * 13 12 11 17 17 C 1.34778 * 120.00451 * 294.56375 * 16 13 12 18 18 O 1.21555 * 119.99530 * 5.25556 * 17 16 13 19 19 C 1.47840 * 120.00365 * 185.25949 * 17 16 13 20 20 C 1.39557 * 120.55179 * 359.72271 * 19 17 16 21 21 N 1.31665 * 120.59611 * 179.69829 * 20 19 17 22 22 C 1.31948 * 121.88859 * 0.59260 * 21 20 19 23 23 C 1.38423 * 121.06483 * 359.69392 * 22 21 20 24 24 Cl 1.73602 * 120.36255 * 180.02562 * 23 22 21 25 25 C 1.38515 * 119.27799 * 0.02562 * 23 22 21 26 26 C 1.46924 * 120.62737 * 329.12623 * 9 7 2 27 27 H 0.96997 * 120.00658 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.58556 * 6.62413 * 10 9 7 29 29 H 1.08996 * 109.58332 * 246.19791 * 10 9 7 30 30 H 1.08998 * 109.50148 * 294.68233 * 11 10 9 31 31 H 1.09009 * 109.49900 * 174.58848 * 11 10 9 32 32 H 1.09003 * 109.46286 * 58.65219 * 12 11 10 33 33 H 1.08997 * 109.46385 * 178.62641 * 12 11 10 34 34 H 1.08995 * 109.46982 * 294.69310 * 14 13 12 35 35 H 1.09001 * 109.46917 * 54.69408 * 14 13 12 36 36 H 0.96696 * 113.99802 * 180.02562 * 15 14 13 37 37 H 0.96998 * 119.99972 * 114.55947 * 16 13 12 38 38 H 1.08000 * 119.70431 * 359.97438 * 20 19 17 39 39 H 1.08006 * 119.46386 * 179.72298 * 22 21 20 40 40 H 1.07997 * 120.86450 * 180.02562 * 25 23 22 41 41 H 1.08998 * 109.59045 * 113.80226 * 26 9 7 42 42 H 1.09001 * 109.58954 * 353.37847 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0721 -1.2126 -0.1971 9 7 1.3490 -2.3746 0.2516 10 6 1.7976 -3.6329 -0.3599 11 6 2.0057 -4.6719 0.7463 12 6 0.7229 -4.7965 1.5715 13 6 0.4032 -3.4509 2.2267 14 6 -0.8612 -3.5850 3.0778 15 8 -1.0900 -2.3652 3.7863 16 7 1.5240 -3.0426 3.0771 17 6 1.8383 -3.7648 4.1708 18 8 1.2548 -4.8063 4.3996 19 6 2.8925 -3.2903 5.0923 20 6 3.5736 -2.0992 4.8378 21 7 4.5086 -1.6728 5.6609 22 6 4.8467 -2.3492 6.7422 23 6 4.2228 -3.5427 7.0623 24 17 4.6816 -4.4174 8.4899 25 6 3.2284 -4.0314 6.2311 26 6 0.1769 -2.3980 1.1373 27 1 -0.4851 0.8400 0.0004 28 1 2.7369 -3.4681 -0.8878 29 1 1.0410 -3.9896 -1.0587 30 1 2.8248 -4.3564 1.3925 31 1 2.2456 -5.6366 0.2989 32 1 -0.1011 -5.0881 0.9202 33 1 0.8602 -5.5529 2.3442 34 1 -1.7134 -3.7952 2.4317 35 1 -0.7351 -4.4006 3.7898 36 1 -1.8770 -2.3783 4.3479 37 1 2.0400 -2.2524 2.8531 38 1 3.3286 -1.5196 3.9600 39 1 5.6225 -1.9652 7.3881 40 1 2.7244 -4.9596 6.4566 41 1 -0.7119 -2.6540 0.5606 42 1 0.0468 -1.4184 1.5972 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700006460.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:13 Heat of formation + Delta-G solvation = -28.814699 kcal Electronic energy + Delta-G solvation = -28449.913468 eV Core-core repulsion = 24456.630254 eV Total energy + Delta-G solvation = -3993.283215 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.79380 -39.60182 -37.43111 -36.88878 -35.93462 -33.86722 -32.89900 -32.56586 -31.51634 -30.11658 -29.63305 -25.49886 -25.11730 -24.82374 -23.76767 -22.29265 -21.26263 -20.32290 -18.80968 -18.17227 -16.96300 -16.91823 -16.80434 -16.59268 -15.60485 -15.16552 -14.98694 -14.69557 -14.28593 -14.06410 -14.05174 -13.54066 -13.40842 -13.24144 -13.06330 -12.74223 -12.52979 -12.38787 -12.26086 -11.95226 -11.56763 -11.47693 -11.19818 -10.98322 -10.77247 -10.53992 -10.28690 -10.20863 -10.04311 -10.01890 -9.83095 -9.66927 -9.60367 -9.22063 -9.06643 -8.57494 -8.50805 -6.72410 -5.86678 -3.35365 0.41598 0.81883 1.70909 2.90690 3.34109 3.40687 3.41340 3.43495 3.70817 4.12440 4.41843 4.44129 4.60427 4.61537 4.73695 4.92910 5.14946 5.26774 5.36647 5.54385 5.57854 5.66424 5.70555 5.77623 5.81606 5.91281 6.05011 6.15004 6.24836 6.32812 6.43411 6.47023 6.57153 6.77100 6.91454 6.98937 7.22163 7.54498 7.58316 7.72394 7.97709 8.03025 8.38273 8.52027 9.12417 9.74085 10.32467 11.20866 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.011951 B = 0.004080 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.274133 B = 6860.335026 C = 7983.242713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.010 3.990 3 Si 0.901 3.099 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.265 4.265 8 H 0.066 0.934 9 N -0.591 5.591 10 C 0.142 3.858 11 C -0.129 4.129 12 C -0.120 4.120 13 C 0.156 3.844 14 C 0.067 3.933 15 O -0.560 6.560 16 N -0.674 5.674 17 C 0.562 3.438 18 O -0.547 6.547 19 C -0.163 4.163 20 C 0.142 3.858 21 N -0.468 5.468 22 C 0.130 3.870 23 C -0.101 4.101 24 Cl -0.054 7.054 25 C -0.012 4.012 26 C 0.175 3.825 27 H 0.256 0.744 28 H 0.054 0.946 29 H 0.018 0.982 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.046 0.954 35 H 0.061 0.939 36 H 0.368 0.632 37 H 0.408 0.592 38 H 0.172 0.828 39 H 0.168 0.832 40 H 0.156 0.844 41 H 0.033 0.967 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.196 -7.985 12.246 15.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.189 4.189 3 Si 0.731 3.269 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.394 4.394 8 H 0.084 0.916 9 N -0.313 5.313 10 C 0.015 3.985 11 C -0.168 4.168 12 C -0.158 4.158 13 C 0.068 3.932 14 C -0.012 4.012 15 O -0.363 6.363 16 N -0.324 5.324 17 C 0.347 3.653 18 O -0.428 6.428 19 C -0.169 4.169 20 C -0.016 4.016 21 N -0.176 5.176 22 C -0.028 4.028 23 C -0.130 4.130 24 Cl -0.025 7.025 25 C -0.039 4.039 26 C 0.048 3.952 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.036 0.964 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.214 0.786 37 H 0.245 0.755 38 H 0.189 0.811 39 H 0.185 0.815 40 H 0.174 0.826 41 H 0.051 0.949 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.659 -7.632 11.948 14.924 hybrid contribution -0.318 0.182 0.441 0.573 sum 4.341 -7.450 12.389 15.094 Atomic orbital electron populations 1.69946 1.05262 1.25883 1.52986 1.25159 0.95326 0.98423 1.00037 0.86399 0.78925 0.83315 0.78278 1.20863 1.21600 1.20702 1.19120 0.91225 0.83886 1.45170 0.91634 1.44030 1.33164 1.03229 1.50916 1.20987 0.97728 0.87033 0.92703 1.21929 0.97126 0.98949 0.98802 1.21747 0.98565 0.96437 0.99078 1.21330 0.83349 0.97540 0.90943 1.22589 0.96659 0.86937 0.95011 1.86561 1.49520 1.36685 1.63583 1.45784 1.32923 1.29541 1.24103 1.17816 0.82218 0.84076 0.81209 1.90669 1.53774 1.23403 1.74924 1.21215 1.00448 0.97536 0.97670 1.23348 0.88998 0.92046 0.97196 1.67909 1.14442 1.32009 1.03266 1.23015 0.96958 0.89237 0.93621 1.21991 1.01137 0.97012 0.92842 1.98383 1.91566 1.75574 1.36985 1.21626 0.92499 0.99185 0.90622 1.21043 0.89005 0.97332 0.87776 0.93348 0.92781 0.96402 0.92549 0.93045 0.91855 0.91265 0.93545 0.92072 0.78648 0.75453 0.81066 0.81508 0.82613 0.94907 0.87742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.60 11.10 55.49 0.62 -23.98 16 2 C 0.01 0.27 5.01 -17.43 -0.09 0.18 16 3 Si 0.90 20.60 29.57 -169.99 -5.03 15.58 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 7 C -0.26 -6.66 9.58 -15.06 -0.14 -6.81 16 8 H 0.07 1.63 7.86 -52.48 -0.41 1.21 16 9 N -0.59 -13.53 2.82 -172.33 -0.49 -14.02 16 10 C 0.14 2.81 6.52 -3.72 -0.02 2.79 16 11 C -0.13 -2.21 5.93 -26.62 -0.16 -2.37 16 12 C -0.12 -2.05 4.56 -26.69 -0.12 -2.17 16 13 C 0.16 2.85 0.45 -131.70 -0.06 2.79 16 14 C 0.07 1.12 5.53 37.16 0.21 1.33 16 15 O -0.56 -9.43 13.08 -35.23 -0.46 -9.89 16 16 N -0.67 -11.75 3.90 -48.43 -0.19 -11.94 16 17 C 0.56 9.28 7.19 -12.33 -0.09 9.19 16 18 O -0.55 -9.86 12.74 5.32 0.07 -9.79 16 19 C -0.16 -2.34 5.89 -104.83 -0.62 -2.95 16 20 C 0.14 1.99 10.71 -17.13 -0.18 1.81 16 21 N -0.47 -6.32 10.34 -12.88 -0.13 -6.46 16 22 C 0.13 1.45 10.97 -17.43 -0.19 1.26 16 23 C -0.10 -1.13 6.34 -39.41 -0.25 -1.38 16 24 Cl -0.05 -0.52 28.98 -51.86 -1.50 -2.02 16 25 C -0.01 -0.16 9.52 -38.83 -0.37 -0.52 16 26 C 0.17 3.86 3.83 -3.71 -0.01 3.84 16 27 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 28 H 0.05 1.06 7.93 -51.93 -0.41 0.64 16 29 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 1.00 7.53 -51.93 -0.39 0.61 16 31 H 0.05 0.78 8.14 -51.92 -0.42 0.36 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.07 1.20 6.43 -51.93 -0.33 0.87 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 1.03 6.16 -51.93 -0.32 0.71 16 36 H 0.37 4.43 9.12 45.56 0.42 4.84 16 37 H 0.41 7.38 6.49 -40.82 -0.26 7.11 16 38 H 0.17 2.38 6.43 -52.49 -0.34 2.04 16 39 H 0.17 1.38 8.06 -52.48 -0.42 0.96 16 40 H 0.16 1.90 7.73 -52.49 -0.41 1.49 16 41 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.10 2.64 5.97 -51.93 -0.31 2.33 16 LS Contribution 354.63 15.07 5.34 5.34 Total: -1.00 -29.23 354.63 -8.32 -37.55 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -4.44 Total: 12.64 kcal Atomic # 6 Polarization: 9.09 SS G_CDS: -2.10 Total: 6.98 kcal Atomic # 7 Polarization: -56.21 SS G_CDS: -0.19 Total: -56.40 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -0.39 Total: -19.68 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.03 Total: 15.58 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.50 Total: -2.02 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.23 -8.32 -37.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700006460.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.737 kcal (2) G-P(sol) polarization free energy of solvation -29.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds