Wall clock time and date at job start Tue Mar 31 2020 22:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86804 * 119.99196 * 2 1 4 4 H 1.48501 * 109.46823 * 239.99597 * 3 2 1 5 5 H 1.48494 * 109.47629 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46767 * 120.00326 * 3 2 1 7 7 C 1.38808 * 120.00552 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00061 * 167.79816 * 7 2 1 9 9 N 1.36942 * 119.99939 * 347.80478 * 7 2 1 10 10 C 1.46923 * 120.63134 * 149.10646 * 9 7 2 11 11 C 1.53186 * 108.77406 * 126.41022 * 10 9 7 12 12 C 1.53036 * 109.31500 * 54.63583 * 11 10 9 13 13 C 1.53045 * 109.53730 * 298.63315 * 12 11 10 14 14 C 1.53002 * 109.49661 * 181.31366 * 13 12 11 15 15 O 1.42904 * 109.46828 * 174.69266 * 14 13 12 16 16 N 1.46497 * 109.49730 * 301.37930 * 13 12 11 17 17 C 1.34778 * 120.00451 * 294.56375 * 16 13 12 18 18 O 1.21555 * 119.99530 * 5.25556 * 17 16 13 19 19 C 1.47840 * 120.00365 * 185.25949 * 17 16 13 20 20 C 1.39557 * 120.55179 * 359.72271 * 19 17 16 21 21 N 1.31665 * 120.59611 * 179.69829 * 20 19 17 22 22 C 1.31948 * 121.88859 * 0.59260 * 21 20 19 23 23 C 1.38423 * 121.06483 * 359.69392 * 22 21 20 24 24 Cl 1.73602 * 120.36255 * 180.02562 * 23 22 21 25 25 C 1.38515 * 119.27799 * 0.02562 * 23 22 21 26 26 C 1.46924 * 120.62737 * 329.12623 * 9 7 2 27 27 H 0.96997 * 120.00658 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.58556 * 6.62413 * 10 9 7 29 29 H 1.08996 * 109.58332 * 246.19791 * 10 9 7 30 30 H 1.08998 * 109.50148 * 294.68233 * 11 10 9 31 31 H 1.09009 * 109.49900 * 174.58848 * 11 10 9 32 32 H 1.09003 * 109.46286 * 58.65219 * 12 11 10 33 33 H 1.08997 * 109.46385 * 178.62641 * 12 11 10 34 34 H 1.08995 * 109.46982 * 294.69310 * 14 13 12 35 35 H 1.09001 * 109.46917 * 54.69408 * 14 13 12 36 36 H 0.96696 * 113.99802 * 180.02562 * 15 14 13 37 37 H 0.96998 * 119.99972 * 114.55947 * 16 13 12 38 38 H 1.08000 * 119.70431 * 359.97438 * 20 19 17 39 39 H 1.08006 * 119.46386 * 179.72298 * 22 21 20 40 40 H 1.07997 * 120.86450 * 180.02562 * 25 23 22 41 41 H 1.08998 * 109.59045 * 113.80226 * 26 9 7 42 42 H 1.09001 * 109.58954 * 353.37847 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0721 -1.2126 -0.1971 9 7 1.3490 -2.3746 0.2516 10 6 1.7976 -3.6329 -0.3599 11 6 2.0057 -4.6719 0.7463 12 6 0.7229 -4.7965 1.5715 13 6 0.4032 -3.4509 2.2267 14 6 -0.8612 -3.5850 3.0778 15 8 -1.0900 -2.3652 3.7863 16 7 1.5240 -3.0426 3.0771 17 6 1.8383 -3.7648 4.1708 18 8 1.2548 -4.8063 4.3996 19 6 2.8925 -3.2903 5.0923 20 6 3.5736 -2.0992 4.8378 21 7 4.5086 -1.6728 5.6609 22 6 4.8467 -2.3492 6.7422 23 6 4.2228 -3.5427 7.0623 24 17 4.6816 -4.4174 8.4899 25 6 3.2284 -4.0314 6.2311 26 6 0.1769 -2.3980 1.1373 27 1 -0.4851 0.8400 0.0004 28 1 2.7369 -3.4681 -0.8878 29 1 1.0410 -3.9896 -1.0587 30 1 2.8248 -4.3564 1.3925 31 1 2.2456 -5.6366 0.2989 32 1 -0.1011 -5.0881 0.9202 33 1 0.8602 -5.5529 2.3442 34 1 -1.7134 -3.7952 2.4317 35 1 -0.7351 -4.4006 3.7898 36 1 -1.8770 -2.3783 4.3479 37 1 2.0400 -2.2524 2.8531 38 1 3.3286 -1.5196 3.9600 39 1 5.6225 -1.9652 7.3881 40 1 2.7244 -4.9596 6.4566 41 1 -0.7119 -2.6540 0.5606 42 1 0.0468 -1.4184 1.5972 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700006460.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:13 Heat of formation + Delta-G solvation = -48.825964 kcal Electronic energy + Delta-G solvation = -28450.781222 eV Core-core repulsion = 24456.630254 eV Total energy + Delta-G solvation = -3994.150968 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.95961 -40.84597 -38.86536 -37.74624 -37.35174 -35.44885 -34.38912 -33.69319 -32.72961 -31.78956 -31.03399 -27.31234 -26.63105 -25.91214 -24.77662 -23.97281 -22.61559 -21.78465 -20.23035 -19.39118 -18.68374 -18.18583 -17.94335 -17.71021 -16.98052 -16.44109 -16.31183 -16.23014 -15.78016 -15.44693 -15.32950 -14.98786 -14.69491 -14.66102 -14.36337 -14.12573 -14.01491 -13.69236 -13.47674 -13.14741 -13.06771 -12.87627 -12.70016 -12.50922 -12.32664 -12.23772 -11.98050 -11.68580 -11.56467 -11.38403 -11.17903 -11.01956 -10.84515 -10.52047 -10.42099 -10.17819 -9.87507 -8.60975 -7.83326 -5.33609 -0.59933 -0.16954 0.82844 1.51542 1.53554 1.58885 1.74587 2.14956 2.53536 2.60824 3.13994 3.32428 3.33830 3.52004 3.56920 3.63416 3.68787 3.89789 4.05750 4.10352 4.26159 4.26986 4.37175 4.49698 4.60094 4.68408 4.76470 4.81627 4.85705 4.93943 4.99095 5.11983 5.17767 5.22101 5.33723 5.49127 5.64216 5.71095 5.76987 6.43810 6.55373 6.63038 6.92609 7.16776 7.19559 7.86756 8.40958 9.21777 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.011951 B = 0.004080 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.274133 B = 6860.335026 C = 7983.242713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.037 4.037 3 Si 0.958 3.042 4 H -0.279 1.279 5 H -0.300 1.300 6 H -0.273 1.273 7 C -0.264 4.264 8 H 0.068 0.932 9 N -0.604 5.604 10 C 0.139 3.861 11 C -0.117 4.117 12 C -0.114 4.114 13 C 0.159 3.841 14 C 0.073 3.927 15 O -0.579 6.579 16 N -0.678 5.678 17 C 0.566 3.434 18 O -0.563 6.563 19 C -0.176 4.176 20 C 0.138 3.862 21 N -0.485 5.485 22 C 0.138 3.862 23 C -0.095 4.095 24 Cl -0.033 7.033 25 C -0.011 4.011 26 C 0.191 3.809 27 H 0.249 0.751 28 H 0.055 0.945 29 H 0.016 0.984 30 H 0.050 0.950 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.389 0.611 37 H 0.404 0.596 38 H 0.165 0.835 39 H 0.200 0.800 40 H 0.160 0.840 41 H 0.008 0.992 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.705 -8.950 13.774 17.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.233 4.233 3 Si 0.786 3.214 4 H -0.205 1.205 5 H -0.226 1.226 6 H -0.198 1.198 7 C -0.394 4.394 8 H 0.086 0.914 9 N -0.327 5.327 10 C 0.014 3.986 11 C -0.156 4.156 12 C -0.153 4.153 13 C 0.071 3.929 14 C -0.006 4.006 15 O -0.386 6.386 16 N -0.326 5.326 17 C 0.352 3.648 18 O -0.445 6.445 19 C -0.182 4.182 20 C -0.019 4.019 21 N -0.193 5.193 22 C -0.019 4.019 23 C -0.124 4.124 24 Cl -0.005 7.005 25 C -0.038 4.038 26 C 0.065 3.935 27 H 0.058 0.942 28 H 0.074 0.926 29 H 0.034 0.966 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.237 0.763 37 H 0.240 0.760 38 H 0.182 0.818 39 H 0.216 0.784 40 H 0.178 0.822 41 H 0.026 0.974 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.178 -8.627 13.492 17.164 hybrid contribution -0.738 0.432 0.040 0.857 sum 5.439 -8.195 13.532 16.729 Atomic orbital electron populations 1.70106 1.06537 1.25812 1.54870 1.25769 0.95879 1.01071 1.00626 0.85497 0.77634 0.79773 0.78463 1.20511 1.22613 1.19836 1.19394 0.91502 0.84835 1.43658 0.91392 1.44220 1.33101 1.03735 1.51632 1.21098 0.97488 0.86426 0.93584 1.21806 0.96899 0.99204 0.97706 1.21712 0.98802 0.95620 0.99151 1.21140 0.84645 0.96680 0.90387 1.22508 0.96193 0.86925 0.94982 1.86517 1.51042 1.36857 1.64148 1.45733 1.32742 1.29606 1.24556 1.18019 0.82314 0.83580 0.80863 1.90649 1.54568 1.24029 1.75226 1.20981 1.00660 0.98302 0.98226 1.23245 0.89369 0.91974 0.97357 1.67941 1.14570 1.32697 1.04095 1.23534 0.96784 0.88743 0.92887 1.21989 1.00339 0.96999 0.93105 1.98397 1.91286 1.75128 1.35648 1.21703 0.92742 0.99110 0.90212 1.20660 0.87914 0.96741 0.88183 0.94180 0.92646 0.96635 0.93128 0.90319 0.91178 0.90852 0.92698 0.91741 0.76311 0.76017 0.81788 0.78369 0.82199 0.97434 0.91112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.38 11.10 21.65 0.24 -52.14 16 2 C -0.04 -1.94 5.01 84.86 0.43 -1.52 16 3 Si 0.96 42.89 29.57 68.60 2.03 44.92 16 4 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 6 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.26 -13.42 9.58 84.03 0.80 -12.61 16 8 H 0.07 3.37 7.86 -2.91 -0.02 3.34 16 9 N -0.60 -27.97 2.82 -699.12 -1.97 -29.95 16 10 C 0.14 5.45 6.52 86.36 0.56 6.02 16 11 C -0.12 -3.84 5.93 30.67 0.18 -3.66 16 12 C -0.11 -3.79 4.56 30.62 0.14 -3.65 16 13 C 0.16 5.81 0.45 3.68 0.00 5.81 16 14 C 0.07 2.42 5.53 71.98 0.40 2.82 16 15 O -0.58 -19.50 13.08 -148.98 -1.95 -21.44 16 16 N -0.68 -23.65 3.90 -425.40 -1.66 -25.31 16 17 C 0.57 18.37 7.19 86.78 0.62 18.99 16 18 O -0.56 -19.71 12.74 -3.89 -0.05 -19.75 16 19 C -0.18 -4.90 5.89 -20.00 -0.12 -5.02 16 20 C 0.14 3.79 10.71 85.04 0.91 4.70 16 21 N -0.48 -12.36 10.34 -194.67 -2.01 -14.37 16 22 C 0.14 2.74 10.97 84.72 0.93 3.67 16 23 C -0.10 -1.90 6.34 22.38 0.14 -1.76 16 24 Cl -0.03 -0.55 28.98 -2.72 -0.08 -0.63 16 25 C -0.01 -0.25 9.52 22.75 0.22 -0.04 16 26 C 0.19 8.66 3.83 86.36 0.33 8.99 16 27 H 0.25 13.88 8.31 -92.71 -0.77 13.11 16 28 H 0.05 2.12 7.93 -2.39 -0.02 2.11 16 29 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.05 1.73 7.53 -2.39 -0.02 1.71 16 31 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 32 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.07 2.42 6.43 -2.39 -0.02 2.40 16 34 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.06 2.12 6.16 -2.39 -0.01 2.10 16 36 H 0.39 9.14 9.12 -74.06 -0.68 8.46 16 37 H 0.40 14.85 6.49 -92.71 -0.60 14.25 16 38 H 0.17 4.63 6.43 -2.91 -0.02 4.61 16 39 H 0.20 2.57 8.06 -2.91 -0.02 2.54 16 40 H 0.16 3.62 7.73 -2.91 -0.02 3.60 16 41 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 42 H 0.07 3.71 5.97 -2.39 -0.01 3.69 16 Total: -1.00 -62.54 354.63 -0.10 -62.63 By element: Atomic # 1 Polarization: 33.50 SS G_CDS: -0.19 Total: 33.31 kcal Atomic # 6 Polarization: 17.20 SS G_CDS: 5.55 Total: 22.75 kcal Atomic # 7 Polarization: -116.37 SS G_CDS: -5.40 Total: -121.78 kcal Atomic # 8 Polarization: -39.20 SS G_CDS: -2.00 Total: -41.20 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -0.08 Total: -0.63 kcal Total: -62.54 -0.10 -62.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700006460.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.805 kcal (2) G-P(sol) polarization free energy of solvation -62.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds