Wall clock time and date at job start Tue Mar 31 2020 22:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 119.99912 * 2 1 4 4 H 1.48498 * 109.47142 * 275.08902 * 3 2 1 5 5 H 1.48506 * 109.47119 * 35.08879 * 3 2 1 6 6 H 1.48505 * 109.47002 * 155.08524 * 3 2 1 7 7 C 1.38805 * 120.00299 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00147 * 340.37397 * 7 2 1 9 9 N 1.36938 * 120.00252 * 160.36819 * 7 2 1 10 10 C 1.46928 * 120.63084 * 332.47326 * 9 7 2 11 11 C 1.53188 * 108.77477 * 233.60961 * 10 9 7 12 12 C 1.53042 * 109.31365 * 305.36532 * 11 10 9 13 13 C 1.53036 * 109.53948 * 61.36665 * 12 11 10 14 14 C 1.52999 * 109.49954 * 178.65008 * 13 12 11 15 15 O 1.42901 * 109.47071 * 182.23250 * 14 13 12 16 16 N 1.46497 * 109.49758 * 58.58465 * 13 12 11 17 17 C 1.34784 * 119.99576 * 62.44024 * 16 13 12 18 18 O 1.21523 * 120.00396 * 354.95041 * 17 16 13 19 19 C 1.48111 * 119.99514 * 174.95069 * 17 16 13 20 20 C 1.39354 * 119.70100 * 180.02562 * 19 17 16 21 21 C 1.38530 * 119.07197 * 179.97438 * 20 19 17 22 22 C 1.38770 * 118.48160 * 359.97438 * 21 20 19 23 23 Cl 1.73593 * 120.34000 * 179.97438 * 22 21 20 24 24 C 1.38728 * 119.32089 * 0.02562 * 22 21 20 25 25 N 1.31486 * 120.88222 * 0.02562 * 24 22 21 26 26 C 1.46927 * 120.63081 * 152.47328 * 9 7 2 27 27 H 0.97004 * 119.99889 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.58139 * 113.82054 * 10 9 7 29 29 H 1.08993 * 109.58279 * 353.39831 * 10 9 7 30 30 H 1.09005 * 109.49249 * 185.41764 * 11 10 9 31 31 H 1.08993 * 109.49967 * 65.31999 * 11 10 9 32 32 H 1.09007 * 109.46215 * 301.34761 * 12 11 10 33 33 H 1.09000 * 109.46251 * 181.39284 * 12 11 10 34 34 H 1.08998 * 109.47323 * 302.23351 * 14 13 12 35 35 H 1.09008 * 109.47074 * 62.23187 * 14 13 12 36 36 H 0.96707 * 113.99349 * 180.02562 * 15 14 13 37 37 H 0.96995 * 120.00439 * 242.44162 * 16 13 12 38 38 H 1.07997 * 120.46510 * 359.97438 * 20 19 17 39 39 H 1.08001 * 120.76077 * 180.02562 * 21 20 19 40 40 H 1.08001 * 119.55718 * 180.02562 * 24 22 21 41 41 H 1.09001 * 109.58682 * 6.61196 * 26 9 7 42 42 H 1.08991 * 109.58819 * 246.18031 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3901 2.1085 -1.3945 5 1 1.5054 2.6193 0.8049 6 1 3.5973 1.4115 0.5898 7 6 2.0102 -1.2021 -0.0005 8 1 1.5173 -2.1104 0.3132 9 7 3.3199 -1.2363 -0.3990 10 6 3.8377 -0.2481 -1.3550 11 6 4.5006 -0.9895 -2.5201 12 6 5.5597 -1.9489 -1.9725 13 6 4.8927 -2.9810 -1.0603 14 6 5.9471 -3.9600 -0.5401 15 8 5.3158 -4.9539 0.2697 16 7 3.8741 -3.7150 -1.8152 17 6 4.2318 -4.4636 -2.8775 18 8 5.3835 -4.4575 -3.2651 19 6 3.2209 -5.2936 -3.5724 20 6 3.5976 -6.0657 -4.6697 21 6 2.6416 -6.8376 -5.3095 22 6 1.3400 -6.8114 -4.8291 23 17 0.1036 -7.7595 -5.5946 24 6 1.0367 -6.0191 -3.7315 25 7 1.9645 -5.2956 -3.1445 26 6 4.2341 -2.2621 0.1214 27 1 -0.4850 0.8401 0.0004 28 1 4.5723 0.3879 -0.8612 29 1 3.0163 0.3623 -1.7303 30 1 4.9730 -0.2691 -3.1880 31 1 3.7465 -1.5543 -3.0681 32 1 6.3001 -1.3863 -1.4037 33 1 6.0502 -2.4598 -2.8010 34 1 6.4444 -4.4400 -1.3828 35 1 6.6824 -3.4191 0.0558 36 1 5.9260 -5.6096 0.6345 37 1 2.9424 -3.6623 -1.5507 38 1 4.6203 -6.0623 -5.0164 39 1 2.9036 -7.4465 -6.1622 40 1 0.0250 -5.9962 -3.3543 41 1 3.6743 -2.9806 0.7201 42 1 5.0011 -1.7904 0.7356 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717028137.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:15 Heat of formation + Delta-G solvation = -45.235549 kcal Electronic energy + Delta-G solvation = -28244.639271 eV Core-core repulsion = 24250.643995 eV Total energy + Delta-G solvation = -3993.995276 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.95576 -40.89483 -38.98542 -37.73527 -37.46285 -35.57107 -34.26609 -33.56598 -32.79731 -32.45476 -31.27104 -27.43748 -26.78756 -25.86566 -24.82195 -23.80024 -23.01341 -22.08575 -20.22746 -19.30484 -18.72812 -18.19718 -17.98530 -17.62092 -17.23964 -16.74001 -16.43041 -16.21714 -15.59562 -15.47539 -15.42106 -15.14514 -14.98051 -14.69022 -14.40449 -14.33636 -13.99184 -13.75662 -13.60322 -13.32811 -13.27984 -13.06923 -12.94284 -12.49102 -12.38132 -12.19327 -12.00228 -11.65722 -11.43863 -11.43253 -11.25114 -11.04546 -10.84665 -10.72307 -10.44762 -10.16414 -9.85640 -8.92119 -8.12254 -5.45644 -0.63905 0.02722 0.84119 1.32219 1.43210 1.51769 1.61553 2.12073 2.44509 2.68019 3.03875 3.08608 3.25591 3.36068 3.56807 3.61822 3.77989 3.91024 3.96244 4.00647 4.16928 4.22564 4.38604 4.56082 4.57204 4.60468 4.69032 4.76112 4.76593 4.77366 4.84730 4.97139 5.00053 5.09492 5.23954 5.26208 5.36932 5.62197 5.88871 6.15672 6.43218 6.69567 6.90895 6.95560 7.16776 7.63397 8.02830 9.07046 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.011688 B = 0.003924 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.137412 B = 7134.386531 C = 8545.615532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.032 4.032 3 Si 0.946 3.054 4 H -0.281 1.281 5 H -0.315 1.315 6 H -0.254 1.254 7 C -0.241 4.241 8 H 0.053 0.947 9 N -0.614 5.614 10 C 0.120 3.880 11 C -0.122 4.122 12 C -0.115 4.115 13 C 0.159 3.841 14 C 0.074 3.926 15 O -0.582 6.582 16 N -0.673 5.673 17 C 0.569 3.431 18 O -0.556 6.556 19 C 0.061 3.939 20 C -0.097 4.097 21 C -0.061 4.061 22 C -0.068 4.068 23 Cl -0.034 7.034 24 C 0.105 3.895 25 N -0.466 5.466 26 C 0.154 3.846 27 H 0.259 0.741 28 H 0.041 0.959 29 H 0.046 0.954 30 H 0.080 0.920 31 H 0.041 0.959 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.393 0.607 37 H 0.408 0.592 38 H 0.170 0.830 39 H 0.188 0.812 40 H 0.181 0.819 41 H 0.059 0.941 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.012 -14.939 -10.494 21.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.227 4.227 3 Si 0.775 3.225 4 H -0.209 1.209 5 H -0.245 1.245 6 H -0.178 1.178 7 C -0.371 4.371 8 H 0.071 0.929 9 N -0.338 5.338 10 C -0.005 4.005 11 C -0.161 4.161 12 C -0.153 4.153 13 C 0.072 3.928 14 C -0.005 4.005 15 O -0.390 6.390 16 N -0.320 5.320 17 C 0.355 3.645 18 O -0.436 6.436 19 C -0.076 4.076 20 C -0.118 4.118 21 C -0.087 4.087 22 C -0.098 4.098 23 Cl -0.005 7.005 24 C -0.056 4.056 25 N -0.178 5.178 26 C 0.028 3.972 27 H 0.068 0.932 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.099 0.901 31 H 0.060 0.940 32 H 0.105 0.895 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.242 0.758 37 H 0.244 0.756 38 H 0.188 0.812 39 H 0.205 0.795 40 H 0.198 0.802 41 H 0.077 0.923 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.881 -14.041 -10.181 20.474 hybrid contribution -0.367 0.189 -0.212 0.464 sum 10.513 -13.852 -10.393 20.259 Atomic orbital electron populations 1.69962 1.07374 1.26960 1.55901 1.25844 0.95753 1.00777 1.00321 0.85933 0.79150 0.80394 0.76992 1.20860 1.24473 1.17849 1.18789 0.85928 0.93385 1.38965 0.92919 1.44407 1.07248 1.33682 1.48426 1.21436 0.96619 0.91893 0.90515 1.21823 0.97965 0.98661 0.97636 1.21751 0.97675 0.95948 0.99902 1.21085 0.88277 0.91060 0.92391 1.22487 0.93733 0.89875 0.94376 1.86502 1.39871 1.43192 1.69395 1.45786 1.12032 1.45531 1.28687 1.17968 0.86962 0.79421 0.80185 1.90644 1.19205 1.67186 1.66564 1.21430 0.91275 0.98588 0.96330 1.22287 1.02546 0.93726 0.93275 1.21904 0.89606 0.97261 0.99979 1.22408 0.92276 0.97941 0.97133 1.98403 1.52324 1.69878 1.79911 1.23129 0.99758 0.91112 0.91591 1.67728 1.01246 1.18963 1.29835 1.21179 0.92928 0.90224 0.92845 0.93170 0.94135 0.93575 0.90133 0.93992 0.89490 0.89979 0.91913 0.90782 0.75820 0.75609 0.81237 0.79522 0.80186 0.92253 0.92653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.05 13.97 21.65 0.30 -59.75 16 2 C -0.03 -1.88 5.25 84.86 0.45 -1.43 16 3 Si 0.95 46.46 24.34 68.60 1.67 48.13 16 4 H -0.28 -13.27 6.72 99.48 0.67 -12.61 16 5 H -0.32 -15.91 7.11 99.48 0.71 -15.21 16 6 H -0.25 -11.71 6.40 99.48 0.64 -11.08 16 7 C -0.24 -13.47 10.04 84.03 0.84 -12.62 16 8 H 0.05 3.24 8.06 -2.91 -0.02 3.22 16 9 N -0.61 -28.12 2.64 -699.11 -1.85 -29.97 16 10 C 0.12 5.02 4.18 86.36 0.36 5.38 16 11 C -0.12 -4.25 5.93 30.67 0.18 -4.07 16 12 C -0.11 -3.49 4.51 30.62 0.14 -3.35 16 13 C 0.16 5.20 0.45 3.68 0.00 5.20 16 14 C 0.07 1.98 5.66 71.98 0.41 2.39 16 15 O -0.58 -15.70 13.02 -148.98 -1.94 -17.64 16 16 N -0.67 -23.82 3.99 -425.15 -1.70 -25.51 16 17 C 0.57 18.76 7.22 86.86 0.63 19.38 16 18 O -0.56 -18.38 12.60 -3.79 -0.05 -18.42 16 19 C 0.06 1.80 6.75 41.90 0.28 2.09 16 20 C -0.10 -2.11 9.63 22.61 0.22 -1.89 16 21 C -0.06 -1.03 9.97 22.47 0.22 -0.81 16 22 C -0.07 -1.32 6.35 22.51 0.14 -1.18 16 23 Cl -0.03 -0.55 28.99 -2.72 -0.08 -0.63 16 24 C 0.10 2.58 10.98 84.86 0.93 3.51 16 25 N -0.47 -14.46 9.55 -184.81 -1.76 -16.22 16 26 C 0.15 5.88 5.04 86.36 0.44 6.31 16 27 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 28 H 0.04 1.60 6.94 -2.39 -0.02 1.58 16 29 H 0.05 2.16 4.50 -2.39 -0.01 2.15 16 30 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 31 H 0.04 1.64 7.53 -2.39 -0.02 1.62 16 32 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16 33 H 0.08 2.50 6.22 -2.39 -0.01 2.49 16 34 H 0.06 1.72 6.24 -2.39 -0.01 1.71 16 35 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 36 H 0.39 6.56 9.12 -74.05 -0.68 5.88 16 37 H 0.41 16.63 7.77 -92.71 -0.72 15.91 16 38 H 0.17 3.14 7.64 -2.91 -0.02 3.12 16 39 H 0.19 1.71 8.06 -2.91 -0.02 1.69 16 40 H 0.18 3.86 8.06 -2.91 -0.02 3.84 16 41 H 0.06 2.47 7.71 -2.39 -0.02 2.46 16 42 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -70.79 350.00 -0.58 -71.37 By element: Atomic # 1 Polarization: 30.17 SS G_CDS: -0.42 Total: 29.75 kcal Atomic # 6 Polarization: 13.66 SS G_CDS: 5.24 Total: 18.90 kcal Atomic # 7 Polarization: -126.45 SS G_CDS: -5.01 Total: -131.45 kcal Atomic # 8 Polarization: -34.08 SS G_CDS: -1.99 Total: -36.06 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 1.67 Total: 48.13 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -0.08 Total: -0.63 kcal Total: -70.79 -0.58 -71.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717028137.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.133 kcal (2) G-P(sol) polarization free energy of solvation -70.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds