Wall clock time and date at job start Tue Mar 31 2020 22:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86799 * 120.00017 * 2 1 4 4 H 1.48497 * 109.46996 * 274.99126 * 3 2 1 5 5 H 1.48497 * 109.46986 * 34.99261 * 3 2 1 6 6 H 1.48500 * 109.46647 * 154.98995 * 3 2 1 7 7 C 1.38811 * 119.99642 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99625 * 209.51346 * 7 2 1 9 9 N 1.36931 * 120.00033 * 29.51635 * 7 2 1 10 10 C 1.47000 * 120.61647 * 24.99294 * 9 7 2 11 11 C 1.53195 * 108.73756 * 126.38618 * 10 9 7 12 12 C 1.53043 * 109.33710 * 54.62644 * 11 10 9 13 13 C 1.53043 * 109.53611 * 298.61361 * 12 11 10 14 14 C 1.52995 * 109.49531 * 181.35410 * 13 12 11 15 15 O 1.42900 * 109.47088 * 174.64075 * 14 13 12 16 16 N 1.46501 * 109.49575 * 301.41630 * 13 12 11 17 17 C 1.34772 * 120.00358 * 297.05728 * 16 13 12 18 18 O 1.21529 * 119.99831 * 4.75001 * 17 16 13 19 19 C 1.48110 * 120.00221 * 184.75462 * 17 16 13 20 20 C 1.39345 * 119.70695 * 179.97438 * 19 17 16 21 21 C 1.38522 * 119.07720 * 179.97438 * 20 19 17 22 22 C 1.38775 * 118.47544 * 0.02562 * 21 20 19 23 23 Cl 1.73600 * 120.33658 * 180.02562 * 22 21 20 24 24 C 1.38719 * 119.32691 * 359.97438 * 22 21 20 25 25 N 1.31489 * 120.87829 * 359.74682 * 24 22 21 26 26 C 1.46929 * 120.63079 * 204.97192 * 9 7 2 27 27 H 0.96997 * 119.99674 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.62461 * 6.59676 * 10 9 7 29 29 H 1.09001 * 109.58014 * 246.14782 * 10 9 7 30 30 H 1.08997 * 109.49739 * 294.65424 * 11 10 9 31 31 H 1.09006 * 109.49435 * 174.58947 * 11 10 9 32 32 H 1.09000 * 109.46356 * 58.63760 * 12 11 10 33 33 H 1.09002 * 109.45632 * 178.59333 * 12 11 10 34 34 H 1.08999 * 109.47311 * 294.64056 * 14 13 12 35 35 H 1.08997 * 109.47539 * 54.64134 * 14 13 12 36 36 H 0.96704 * 113.99763 * 179.97438 * 15 14 13 37 37 H 0.97001 * 119.99717 * 117.05894 * 16 13 12 38 38 H 1.08005 * 120.46340 * 0.02562 * 20 19 17 39 39 H 1.07995 * 120.76311 * 179.97438 * 21 20 19 40 40 H 1.07993 * 119.56469 * 179.97438 * 24 22 21 41 41 H 1.08994 * 109.58875 * 113.84208 * 26 9 7 42 42 H 1.08996 * 109.58459 * 353.41553 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3923 2.1073 -1.3947 5 1 1.5045 2.6199 0.8029 6 1 3.5966 1.4119 0.5919 7 6 2.0103 -1.2022 -0.0005 8 1 2.9852 -1.2631 0.4602 9 7 1.4588 -2.3108 -0.5853 10 6 0.4569 -2.1744 -1.6522 11 6 0.9171 -2.9873 -2.8664 12 6 1.1859 -4.4314 -2.4370 13 6 2.3018 -4.4547 -1.3899 14 6 2.5930 -5.9014 -0.9861 15 8 3.7166 -5.9328 -0.1038 16 7 3.5124 -3.8509 -1.9520 17 6 4.1186 -4.4188 -3.0132 18 8 3.6144 -5.3813 -3.5577 19 6 5.3991 -3.8702 -3.5160 20 6 6.0208 -4.4626 -4.6134 21 6 7.2178 -3.9385 -5.0731 22 6 7.7533 -2.8384 -4.4181 23 17 9.2506 -2.1422 -4.9539 24 6 7.0794 -2.3001 -3.3317 25 7 5.9416 -2.8152 -2.9206 26 6 1.8577 -3.6590 -0.1585 27 1 -0.4849 0.8400 0.0004 28 1 0.3592 -1.1251 -1.9307 29 1 -0.5035 -2.5526 -1.3020 30 1 1.8309 -2.5517 -3.2706 31 1 0.1389 -2.9735 -3.6296 32 1 0.2784 -4.8583 -2.0102 33 1 1.4895 -5.0176 -3.3044 34 1 1.7225 -6.3199 -0.4809 35 1 2.8138 -6.4898 -1.8766 36 1 3.9583 -6.8206 0.1938 37 1 3.8778 -3.0422 -1.5602 38 1 5.5751 -5.3180 -5.0994 39 1 7.7231 -4.3764 -5.9211 40 1 7.4929 -1.4443 -2.8190 41 1 1.0116 -4.1581 0.3135 42 1 2.6841 -3.5887 0.5487 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717028138.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:17 Heat of formation + Delta-G solvation = -48.280226 kcal Electronic energy + Delta-G solvation = -28214.987998 eV Core-core repulsion = 24220.860695 eV Total energy + Delta-G solvation = -3994.127303 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.92227 -40.83790 -38.85874 -37.72118 -37.38751 -35.53158 -34.18752 -33.47479 -32.51856 -32.34660 -31.09606 -27.30201 -26.61629 -25.84661 -24.80589 -23.95185 -22.75192 -21.92929 -20.15619 -19.28099 -18.65240 -18.17004 -17.97202 -17.56702 -16.83870 -16.59600 -16.31488 -16.20468 -15.83847 -15.44475 -15.30090 -14.95264 -14.76443 -14.64958 -14.34036 -14.23805 -14.02136 -13.60646 -13.47791 -13.21294 -13.06033 -12.96538 -12.82350 -12.46242 -12.37440 -12.19003 -11.94984 -11.84780 -11.54060 -11.37115 -11.14192 -11.03648 -10.83237 -10.55883 -10.39557 -10.15066 -9.82840 -8.76818 -7.91390 -5.24313 -0.62770 0.03617 0.84874 1.45957 1.50001 1.57901 1.64209 2.13904 2.52207 2.69594 3.06105 3.21339 3.30161 3.57953 3.62164 3.64957 3.79224 3.93777 4.02233 4.06735 4.25495 4.33341 4.51816 4.57808 4.59461 4.68510 4.75044 4.79489 4.86043 4.88916 4.97577 5.04921 5.16081 5.24616 5.27074 5.46471 5.59032 5.67464 5.72092 6.34123 6.44866 6.73163 6.94107 7.11774 7.20587 7.83666 8.36376 9.15469 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.009814 B = 0.004314 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2852.280645 B = 6489.521923 C = 8415.210527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.037 4.037 3 Si 0.948 3.052 4 H -0.291 1.291 5 H -0.298 1.298 6 H -0.267 1.267 7 C -0.262 4.262 8 H 0.066 0.934 9 N -0.599 5.599 10 C 0.178 3.822 11 C -0.123 4.123 12 C -0.112 4.112 13 C 0.165 3.835 14 C 0.075 3.925 15 O -0.580 6.580 16 N -0.669 5.669 17 C 0.568 3.432 18 O -0.559 6.559 19 C 0.064 3.936 20 C -0.098 4.098 21 C -0.062 4.062 22 C -0.069 4.069 23 Cl -0.035 7.035 24 C 0.106 3.894 25 N -0.465 5.465 26 C 0.153 3.847 27 H 0.250 0.750 28 H 0.044 0.956 29 H 0.005 0.995 30 H 0.041 0.959 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.392 0.608 37 H 0.409 0.591 38 H 0.168 0.832 39 H 0.186 0.814 40 H 0.185 0.815 41 H 0.034 0.966 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.826 -11.496 -10.392 21.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.234 4.234 3 Si 0.777 3.223 4 H -0.218 1.218 5 H -0.225 1.225 6 H -0.191 1.191 7 C -0.392 4.392 8 H 0.084 0.916 9 N -0.322 5.322 10 C 0.052 3.948 11 C -0.162 4.162 12 C -0.151 4.151 13 C 0.077 3.923 14 C -0.004 4.004 15 O -0.387 6.387 16 N -0.316 5.316 17 C 0.353 3.647 18 O -0.439 6.439 19 C -0.073 4.073 20 C -0.119 4.119 21 C -0.088 4.088 22 C -0.098 4.098 23 Cl -0.006 7.006 24 C -0.055 4.055 25 N -0.176 5.176 26 C 0.027 3.973 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.023 0.977 30 H 0.060 0.940 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.241 0.759 37 H 0.245 0.755 38 H 0.185 0.815 39 H 0.203 0.797 40 H 0.202 0.798 41 H 0.051 0.949 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 13.983 -10.991 -10.114 20.460 hybrid contribution 0.658 0.774 -0.150 1.027 sum 14.640 -10.216 -10.264 20.593 Atomic orbital electron populations 1.70318 1.06732 1.25960 1.53534 1.25480 0.95440 1.01107 1.01411 0.85539 0.78966 0.80649 0.77154 1.21788 1.22476 1.19133 1.19348 0.98260 0.88224 1.33351 0.91650 1.44292 1.47953 1.00726 1.39247 1.20578 0.89634 0.97834 0.86707 1.21895 1.00332 0.95748 0.98234 1.21708 0.97359 0.97099 0.98902 1.20996 0.84592 0.92183 0.94549 1.22466 0.89215 0.95252 0.93443 1.86483 1.50117 1.35186 1.66928 1.45704 1.26504 1.28973 1.30447 1.17998 0.83529 0.82905 0.80219 1.90651 1.65759 1.28476 1.59013 1.21376 0.96147 0.94091 0.95717 1.22270 0.94560 1.00602 0.94512 1.21890 0.94083 0.93080 0.99715 1.22414 0.91473 0.97768 0.98191 1.98405 1.29772 1.83292 1.89099 1.23162 0.89619 0.99360 0.93332 1.67723 1.10976 1.09518 1.29382 1.21097 0.97576 0.85572 0.93095 0.94149 0.93757 0.97709 0.93970 0.91280 0.90643 0.90355 0.91461 0.91869 0.75883 0.75471 0.81468 0.79664 0.79807 0.94851 0.92438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.15 11.85 21.65 0.26 -53.89 16 2 C -0.04 -2.07 4.57 84.86 0.39 -1.69 16 3 Si 0.95 44.87 29.64 68.60 2.03 46.91 16 4 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 5 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 6 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 7 C -0.26 -14.20 9.51 84.03 0.80 -13.40 16 8 H 0.07 3.52 7.97 -2.91 -0.02 3.50 16 9 N -0.60 -29.32 2.86 -698.91 -2.00 -31.32 16 10 C 0.18 8.48 5.45 86.35 0.47 8.95 16 11 C -0.12 -4.77 5.93 30.67 0.18 -4.59 16 12 C -0.11 -3.84 4.52 30.62 0.14 -3.71 16 13 C 0.16 5.74 0.45 3.68 0.00 5.74 16 14 C 0.08 2.18 5.58 71.98 0.40 2.58 16 15 O -0.58 -16.32 13.08 -148.98 -1.95 -18.27 16 16 N -0.67 -23.92 3.93 -425.15 -1.67 -25.59 16 17 C 0.57 18.89 7.22 86.87 0.63 19.52 16 18 O -0.56 -19.10 12.63 -3.81 -0.05 -19.15 16 19 C 0.06 1.84 6.75 41.90 0.28 2.13 16 20 C -0.10 -2.10 9.63 22.60 0.22 -1.89 16 21 C -0.06 -0.99 9.97 22.47 0.22 -0.77 16 22 C -0.07 -1.25 6.35 22.51 0.14 -1.11 16 23 Cl -0.03 -0.52 28.99 -2.72 -0.08 -0.60 16 24 C 0.11 2.39 10.98 84.86 0.93 3.33 16 25 N -0.46 -13.56 9.55 -184.83 -1.76 -15.32 16 26 C 0.15 6.31 5.08 86.36 0.44 6.75 16 27 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 28 H 0.04 2.39 6.24 -2.39 -0.01 2.37 16 29 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 30 H 0.04 1.74 7.53 -2.39 -0.02 1.72 16 31 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 32 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.08 2.64 6.26 -2.39 -0.01 2.62 16 34 H 0.07 1.69 8.14 -2.39 -0.02 1.68 16 35 H 0.06 1.86 6.30 -2.39 -0.02 1.84 16 36 H 0.39 6.98 9.12 -74.05 -0.68 6.31 16 37 H 0.41 16.20 7.76 -92.71 -0.72 15.48 16 38 H 0.17 3.14 7.64 -2.91 -0.02 3.12 16 39 H 0.19 1.63 8.06 -2.91 -0.02 1.61 16 40 H 0.19 3.41 8.06 -2.91 -0.02 3.39 16 41 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.06 2.48 7.78 -2.39 -0.02 2.46 16 Total: -1.00 -67.09 357.58 -0.29 -67.38 By element: Atomic # 1 Polarization: 28.33 SS G_CDS: -0.32 Total: 28.01 kcal Atomic # 6 Polarization: 16.60 SS G_CDS: 5.25 Total: 21.84 kcal Atomic # 7 Polarization: -120.95 SS G_CDS: -5.18 Total: -126.13 kcal Atomic # 8 Polarization: -35.42 SS G_CDS: -2.00 Total: -37.42 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.91 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -0.08 Total: -0.60 kcal Total: -67.09 -0.29 -67.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717028138.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.099 kcal (2) G-P(sol) polarization free energy of solvation -67.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds