Wall clock time and date at job start Tue Mar 31 2020 22:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86793 * 120.00524 * 2 1 4 4 H 1.48496 * 109.47298 * 269.99736 * 3 2 1 5 5 H 1.48503 * 109.47034 * 29.99705 * 3 2 1 6 6 H 1.48502 * 109.47573 * 149.99483 * 3 2 1 7 7 C 1.38811 * 119.99707 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00420 * 179.72835 * 7 2 1 9 9 N 1.36936 * 120.00096 * 0.02562 * 7 2 1 10 10 C 1.46503 * 120.00254 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.49763 * 60.06623 * 10 9 7 12 12 O 1.42900 * 109.47027 * 305.00200 * 11 10 9 13 13 C 1.53033 * 109.49810 * 180.16445 * 10 9 7 14 14 C 1.53041 * 109.53983 * 58.58646 * 13 10 9 15 15 C 1.53194 * 109.31389 * 61.36561 * 14 13 10 16 16 N 1.46929 * 108.77189 * 305.36740 * 15 14 13 17 17 C 1.34778 * 120.62462 * 233.58381 * 16 15 14 18 18 O 1.21527 * 119.99246 * 174.21940 * 17 16 15 19 19 C 1.48066 * 120.00331 * 354.22341 * 17 16 15 20 20 C 1.39863 * 120.93280 * 306.23320 * 19 17 16 21 21 C 1.38084 * 119.02038 * 179.79632 * 20 19 17 22 22 N 1.31841 * 120.94092 * 0.50094 * 21 20 19 23 23 C 1.31757 * 122.06896 * 359.72838 * 22 21 20 24 24 C 1.38353 * 120.87448 * 0.02798 * 23 22 21 25 25 Cl 1.73601 * 120.51981 * 179.97438 * 24 23 22 26 26 C 1.46923 * 118.74150 * 53.60727 * 16 15 14 27 27 H 0.97009 * 119.99791 * 0.02562 * 1 2 3 28 28 H 0.97001 * 120.00001 * 0.02562 * 9 7 2 29 29 H 1.09005 * 109.47055 * 64.99903 * 11 10 9 30 30 H 1.08999 * 109.47290 * 185.00474 * 11 10 9 31 31 H 0.96705 * 114.00052 * 180.02562 * 12 11 10 32 32 H 1.09001 * 109.46313 * 178.60817 * 13 10 9 33 33 H 1.08998 * 109.46415 * 298.56460 * 13 10 9 34 34 H 1.08998 * 109.49948 * 301.41190 * 14 13 10 35 35 H 1.09000 * 109.52305 * 181.33084 * 14 13 10 36 36 H 1.08992 * 109.58777 * 185.57863 * 15 14 13 37 37 H 1.09004 * 109.70252 * 65.21878 * 15 14 13 38 38 H 1.08004 * 120.48808 * 0.03494 * 20 19 17 39 39 H 1.08003 * 119.52466 * 180.20686 * 21 20 19 40 40 H 1.08012 * 119.55963 * 180.02562 * 23 22 21 41 41 H 1.09001 * 109.58646 * 186.60121 * 26 16 15 42 42 H 1.08997 * 109.58801 * 66.17691 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4979 2.0462 -1.4000 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4400 0.7001 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2023 -0.0039 9 7 1.3254 -2.3881 0.0005 10 6 2.0578 -3.6569 0.0005 11 6 2.9364 -3.7393 1.2504 12 8 3.7855 -2.5916 1.3123 13 6 1.0638 -4.8204 -0.0036 14 6 0.1629 -4.7196 -1.2366 15 6 1.0224 -4.8135 -2.5012 16 7 2.0730 -3.7884 -2.4360 17 6 2.2396 -2.9108 -3.4453 18 8 3.0403 -2.0033 -3.3352 19 6 1.4470 -3.0524 -4.6879 20 6 1.4324 -4.2572 -5.3980 21 6 0.6761 -4.3468 -6.5498 22 7 -0.0175 -3.3145 -6.9873 23 6 -0.0289 -2.1598 -6.3529 24 6 0.6963 -1.9826 -5.1880 25 17 0.6753 -0.4570 -4.3599 26 6 2.9388 -3.7386 -1.2501 27 1 -0.4850 0.8401 -0.0004 28 1 0.3554 -2.3880 -0.0002 29 1 2.3039 -3.7717 2.1376 30 1 3.5471 -4.6411 1.2064 31 1 4.3720 -2.5773 2.0811 32 1 1.6092 -5.7639 -0.0286 33 1 0.4521 -4.7787 0.8975 34 1 -0.3643 -3.7656 -1.2250 35 1 -0.5604 -5.5350 -1.2269 36 1 0.3998 -4.6433 -3.3796 37 1 1.4790 -5.8013 -2.5627 38 1 2.0012 -5.1062 -5.0485 39 1 0.6563 -5.2744 -7.1027 40 1 -0.6120 -1.3407 -6.7474 41 1 3.5808 -2.8593 -1.3030 42 1 3.5517 -4.6390 -1.2070 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717257929.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:14 Heat of formation + Delta-G solvation = -18.887019 kcal Electronic energy + Delta-G solvation = -29086.682442 eV Core-core repulsion = 25093.829724 eV Total energy + Delta-G solvation = -3992.852718 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.69309 -39.41414 -37.67423 -36.29136 -35.75016 -33.90680 -32.72474 -32.03931 -31.11660 -31.04306 -28.57922 -26.13517 -25.38246 -23.90315 -23.47184 -23.42719 -21.72471 -20.03575 -18.48809 -17.62024 -17.12403 -16.77346 -16.30410 -16.17540 -15.83672 -15.37472 -14.75677 -14.50255 -14.19557 -14.11337 -14.07845 -13.76709 -13.42521 -13.27965 -12.95372 -12.82552 -12.34764 -12.10036 -12.03129 -11.75394 -11.63884 -11.24841 -10.85239 -10.81074 -10.70190 -10.60891 -10.48564 -10.18264 -10.05046 -9.76296 -9.69271 -9.47257 -9.24324 -8.95884 -8.92819 -8.77200 -8.10992 -6.76545 -5.51393 -2.76216 0.75298 0.82614 2.28596 2.97245 3.29839 3.60812 3.63834 3.66580 3.69266 4.26239 4.45838 4.62164 4.74524 4.76178 4.83066 5.05217 5.06035 5.18769 5.36326 5.40964 5.42805 5.51540 5.63198 5.68194 5.75108 5.78614 5.85798 5.91603 6.00041 6.07072 6.16956 6.24178 6.29497 6.34929 6.58030 6.76964 6.83864 7.02883 7.66387 7.79523 8.21421 8.38864 8.57804 8.65597 9.79917 10.26315 10.62176 11.71968 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.011263 B = 0.006065 C = 0.004535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2485.509477 B = 4615.465917 C = 6172.634138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.018 4.018 3 Si 0.894 3.106 4 H -0.294 1.294 5 H -0.299 1.299 6 H -0.283 1.283 7 C -0.191 4.191 8 H 0.090 0.910 9 N -0.700 5.700 10 C 0.188 3.812 11 C 0.075 3.925 12 O -0.535 6.535 13 C -0.115 4.115 14 C -0.132 4.132 15 C 0.108 3.892 16 N -0.584 5.584 17 C 0.560 3.440 18 O -0.497 6.497 19 C -0.063 4.063 20 C -0.137 4.137 21 C 0.092 3.908 22 N -0.464 5.464 23 C 0.108 3.892 24 C -0.055 4.055 25 Cl -0.004 7.004 26 C 0.110 3.890 27 H 0.247 0.753 28 H 0.381 0.619 29 H 0.038 0.962 30 H 0.023 0.977 31 H 0.351 0.649 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.146 0.854 39 H 0.165 0.835 40 H 0.169 0.831 41 H 0.105 0.895 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.923 -15.008 -7.703 16.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.211 4.211 3 Si 0.727 3.273 4 H -0.222 1.222 5 H -0.226 1.226 6 H -0.209 1.209 7 C -0.322 4.322 8 H 0.108 0.892 9 N -0.340 5.340 10 C 0.094 3.906 11 C -0.006 4.006 12 O -0.337 6.337 13 C -0.153 4.153 14 C -0.170 4.170 15 C -0.015 4.015 16 N -0.316 5.316 17 C 0.345 3.655 18 O -0.370 6.370 19 C -0.075 4.075 20 C -0.158 4.158 21 C -0.065 4.065 22 N -0.173 5.173 23 C -0.050 4.050 24 C -0.085 4.085 25 Cl 0.025 6.975 26 C -0.014 4.014 27 H 0.057 0.943 28 H 0.216 0.784 29 H 0.056 0.944 30 H 0.041 0.959 31 H 0.196 0.804 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.164 0.836 39 H 0.182 0.818 40 H 0.186 0.814 41 H 0.123 0.877 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.688 -14.149 -8.868 16.713 hybrid contribution 0.779 0.963 1.451 1.908 sum 1.467 -13.186 -7.418 15.200 Atomic orbital electron populations 1.69649 1.04847 1.24749 1.60135 1.24562 0.95219 0.97069 1.04293 0.86347 0.78814 0.84815 0.77340 1.22212 1.22569 1.20919 1.19434 0.91729 0.82904 1.38177 0.89235 1.42395 1.05152 0.99170 1.87312 1.19933 0.90917 0.88262 0.91440 1.22742 0.92079 0.86725 0.99042 1.86981 1.54720 1.43733 1.48315 1.21619 0.97761 0.97538 0.98350 1.21856 0.97796 1.03305 0.94033 1.21752 0.89698 0.90944 0.99123 1.47616 1.33853 1.31725 1.18408 1.17808 0.83183 0.82062 0.82467 1.90850 1.36162 1.30016 1.80016 1.20497 0.96678 0.93259 0.97040 1.22319 1.00183 0.96883 0.96373 1.22748 0.92662 0.97504 0.93573 1.67646 1.18668 0.99544 1.31479 1.22801 0.96265 0.95758 0.90177 1.22380 0.99305 0.90686 0.96109 1.98517 1.96918 1.25707 1.76354 1.22205 0.92759 1.01964 0.84447 0.94323 0.78391 0.94376 0.95941 0.80441 0.91994 0.91423 0.89989 0.91379 0.90644 0.91813 0.83640 0.81784 0.81432 0.87710 0.93437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.70 13.06 55.49 0.72 -27.97 16 2 C -0.02 -0.53 5.50 -17.43 -0.10 -0.62 16 3 Si 0.89 24.36 29.55 -169.99 -5.02 19.34 16 4 H -0.29 -8.25 7.11 56.52 0.40 -7.84 16 5 H -0.30 -8.15 7.11 56.52 0.40 -7.75 16 6 H -0.28 -7.57 7.11 56.52 0.40 -7.17 16 7 C -0.19 -5.27 8.06 -15.06 -0.12 -5.39 16 8 H 0.09 2.57 5.27 -52.48 -0.28 2.29 16 9 N -0.70 -16.54 4.75 -47.12 -0.22 -16.77 16 10 C 0.19 3.42 0.68 -131.70 -0.09 3.33 16 11 C 0.08 1.27 6.09 37.16 0.23 1.49 16 12 O -0.53 -10.18 10.05 -35.23 -0.35 -10.54 16 13 C -0.11 -1.63 4.76 -26.69 -0.13 -1.76 16 14 C -0.13 -1.82 5.91 -26.61 -0.16 -1.97 16 15 C 0.11 1.41 5.63 -3.71 -0.02 1.39 16 16 N -0.58 -9.96 2.89 -173.80 -0.50 -10.46 16 17 C 0.56 10.79 6.70 -12.23 -0.08 10.71 16 18 O -0.50 -11.77 15.67 5.34 0.08 -11.68 16 19 C -0.06 -1.00 4.63 -104.63 -0.48 -1.49 16 20 C -0.14 -1.59 7.91 -39.03 -0.31 -1.90 16 21 C 0.09 0.96 11.17 -17.60 -0.20 0.77 16 22 N -0.46 -5.91 10.33 -13.27 -0.14 -6.05 16 23 C 0.11 1.48 10.98 -17.54 -0.19 1.28 16 24 C -0.05 -0.90 6.37 -38.91 -0.25 -1.15 16 25 Cl 0.00 -0.09 27.55 -51.86 -1.43 -1.52 16 26 C 0.11 2.00 4.92 -3.71 -0.02 1.99 16 27 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 28 H 0.38 9.74 6.43 -40.82 -0.26 9.48 16 29 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.35 4.95 9.12 45.56 0.42 5.36 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.08 1.44 6.75 -51.93 -0.35 1.09 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.94 5.39 -51.93 -0.28 0.66 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.15 1.30 7.80 -52.48 -0.41 0.89 16 39 H 0.17 1.11 8.06 -52.48 -0.42 0.68 16 40 H 0.17 1.91 8.06 -52.48 -0.42 1.48 16 41 H 0.10 2.36 5.80 -51.93 -0.30 2.06 16 42 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 352.48 15.07 5.31 5.31 Total: -1.00 -35.59 352.48 -7.87 -43.46 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -4.40 Total: 10.20 kcal Atomic # 6 Polarization: 8.59 SS G_CDS: -1.92 Total: 6.68 kcal Atomic # 7 Polarization: -61.11 SS G_CDS: -0.14 Total: -61.25 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: -0.27 Total: -22.22 kcal Atomic # 14 Polarization: 24.36 SS G_CDS: -5.02 Total: 19.34 kcal Atomic # 17 Polarization: -0.09 SS G_CDS: -1.43 Total: -1.52 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -35.59 -7.87 -43.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717257929.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.569 kcal (2) G-P(sol) polarization free energy of solvation -35.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds