Wall clock time and date at job start Tue Mar 31 2020 22:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 120.00305 * 2 1 4 4 H 1.48491 * 109.46908 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46914 * 300.00508 * 3 2 1 6 6 H 1.48499 * 109.46577 * 60.00120 * 3 2 1 7 7 C 1.38807 * 119.99716 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00259 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00243 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00477 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.52392 * 300.08160 * 10 9 7 12 12 O 1.42900 * 109.47236 * 59.91287 * 11 10 9 13 13 C 1.53035 * 109.49982 * 179.97438 * 10 9 7 14 14 C 1.53033 * 109.54064 * 301.41385 * 13 10 9 15 15 C 1.53193 * 109.31343 * 298.63477 * 14 13 10 16 16 N 1.46915 * 108.77400 * 54.63465 * 15 14 13 17 17 C 1.34779 * 120.63038 * 126.41448 * 16 15 14 18 18 O 1.21531 * 119.99884 * 175.76633 * 17 16 15 19 19 C 1.48071 * 120.00280 * 355.76852 * 17 16 15 20 20 C 1.39862 * 120.93167 * 53.99339 * 19 17 16 21 21 C 1.38087 * 119.02018 * 179.73182 * 20 19 17 22 22 N 1.31846 * 120.93548 * 0.56298 * 21 20 19 23 23 C 1.31750 * 122.07657 * 359.71038 * 22 21 20 24 24 C 1.38361 * 120.87079 * 0.02562 * 23 22 21 25 25 Cl 1.73595 * 120.52143 * 180.02562 * 24 23 22 26 26 C 1.46928 * 118.74180 * 306.39131 * 16 15 14 27 27 H 0.97009 * 119.99594 * 359.97438 * 1 2 3 28 28 H 0.97004 * 120.00235 * 359.97438 * 9 7 2 29 29 H 1.08999 * 109.47308 * 179.91648 * 11 10 9 30 30 H 1.09001 * 109.46977 * 299.91683 * 11 10 9 31 31 H 0.96701 * 113.99877 * 180.02562 * 12 11 10 32 32 H 1.09005 * 109.45952 * 181.39124 * 13 10 9 33 33 H 1.09007 * 109.45912 * 61.43435 * 13 10 9 34 34 H 1.09000 * 109.49793 * 58.58612 * 14 13 10 35 35 H 1.09006 * 109.49608 * 178.68262 * 14 13 10 36 36 H 1.08997 * 109.58734 * 174.42179 * 15 14 13 37 37 H 1.08999 * 109.58661 * 294.84480 * 15 14 13 38 38 H 1.08004 * 120.49086 * 359.97438 * 20 19 17 39 39 H 1.08004 * 119.53215 * 180.25138 * 21 20 19 40 40 H 1.07999 * 119.56289 * 179.97438 * 23 22 21 41 41 H 1.09005 * 109.58190 * 293.82303 * 26 16 15 42 42 H 1.08993 * 109.70512 * 173.46856 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 6 2.9395 -3.7383 -1.2484 12 8 3.8673 -2.6516 -1.2479 13 6 1.0639 -4.8204 0.0001 14 6 0.1603 -4.7211 1.2312 15 6 1.0172 -4.8165 2.4976 16 7 2.0678 -3.7914 2.4359 17 6 2.2323 -2.9150 3.4465 18 8 3.1526 -2.1218 3.4192 19 6 1.2917 -2.9186 4.5901 20 6 1.0418 -4.0903 5.3118 21 6 0.1614 -4.0474 6.3747 22 7 -0.4480 -2.9260 6.7053 23 6 -0.2466 -1.8008 6.0501 24 6 0.6231 -1.7512 4.9751 25 17 0.8821 -0.2636 4.1186 26 6 2.9362 -3.7401 1.2518 27 1 -0.4850 0.8402 0.0004 28 1 0.3554 -2.3881 0.0002 29 1 3.4851 -4.6819 -1.2468 30 1 2.3141 -3.6817 -2.1393 31 1 4.4596 -2.6397 -2.0122 32 1 1.6092 -5.7639 0.0251 33 1 0.4540 -4.7775 -0.9024 34 1 -0.3668 -3.7671 1.2197 35 1 -0.5626 -5.5369 1.2187 36 1 0.3928 -4.6474 3.3748 37 1 1.4736 -5.8046 2.5563 38 1 1.5331 -5.0141 5.0441 39 1 -0.0345 -4.9465 6.9403 40 1 -0.7679 -0.9057 6.3556 41 1 3.5492 -4.6405 1.2090 42 1 3.5798 -2.8622 1.3058 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717257931.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:16 Heat of formation + Delta-G solvation = -18.889601 kcal Electronic energy + Delta-G solvation = -29175.919393 eV Core-core repulsion = 25183.066563 eV Total energy + Delta-G solvation = -3992.852830 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.69777 -39.39645 -37.68942 -36.23311 -35.77269 -33.95109 -32.73150 -32.04506 -31.10956 -31.01578 -28.58553 -26.13275 -25.42112 -23.87747 -23.46040 -23.44624 -21.72282 -20.04510 -18.47295 -17.61663 -17.12085 -16.75137 -16.33689 -16.21224 -15.80565 -15.36431 -14.76685 -14.52848 -14.20840 -14.09445 -14.01239 -13.80922 -13.45904 -13.27594 -13.00098 -12.75491 -12.36449 -12.09588 -12.02713 -11.69767 -11.63311 -11.24180 -10.85311 -10.78233 -10.73576 -10.63524 -10.49222 -10.17419 -10.03462 -9.73531 -9.68000 -9.54585 -9.22850 -8.98599 -8.87615 -8.79219 -8.12543 -6.79416 -5.54803 -2.80090 0.79307 0.85831 2.34487 2.96173 3.31845 3.56215 3.63603 3.66732 3.68258 4.29731 4.46091 4.64579 4.74988 4.77465 4.79935 5.05513 5.08052 5.17778 5.36853 5.40933 5.43396 5.52646 5.62507 5.69551 5.74907 5.81308 5.85185 5.88473 6.00332 6.06851 6.15550 6.23981 6.32533 6.34629 6.58195 6.75999 6.84850 7.02092 7.70054 7.79095 8.18162 8.36344 8.56328 8.62089 9.76674 10.23473 10.59389 11.68311 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.010973 B = 0.006370 C = 0.004684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2551.213108 B = 4394.332261 C = 5976.091597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.015 4.015 3 Si 0.890 3.110 4 H -0.280 1.280 5 H -0.298 1.298 6 H -0.298 1.298 7 C -0.198 4.198 8 H 0.091 0.909 9 N -0.701 5.701 10 C 0.188 3.812 11 C 0.077 3.923 12 O -0.540 6.540 13 C -0.115 4.115 14 C -0.132 4.132 15 C 0.102 3.898 16 N -0.582 5.582 17 C 0.564 3.436 18 O -0.506 6.506 19 C -0.063 4.063 20 C -0.140 4.140 21 C 0.090 3.910 22 N -0.464 5.464 23 C 0.108 3.892 24 C -0.051 4.051 25 Cl -0.002 7.002 26 C 0.112 3.888 27 H 0.247 0.753 28 H 0.382 0.618 29 H 0.023 0.977 30 H 0.040 0.960 31 H 0.354 0.646 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.065 0.935 38 H 0.146 0.854 39 H 0.165 0.835 40 H 0.169 0.831 41 H 0.047 0.953 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.255 -14.432 7.242 16.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.208 4.208 3 Si 0.723 3.277 4 H -0.205 1.205 5 H -0.226 1.226 6 H -0.225 1.225 7 C -0.329 4.329 8 H 0.108 0.892 9 N -0.342 5.342 10 C 0.095 3.905 11 C -0.004 4.004 12 O -0.342 6.342 13 C -0.153 4.153 14 C -0.170 4.170 15 C -0.022 4.022 16 N -0.314 5.314 17 C 0.349 3.651 18 O -0.380 6.380 19 C -0.075 4.075 20 C -0.160 4.160 21 C -0.066 4.066 22 N -0.173 5.173 23 C -0.050 4.050 24 C -0.081 4.081 25 Cl 0.028 6.972 26 C -0.012 4.012 27 H 0.057 0.943 28 H 0.216 0.784 29 H 0.041 0.959 30 H 0.058 0.942 31 H 0.198 0.802 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.098 0.902 37 H 0.083 0.917 38 H 0.164 0.836 39 H 0.182 0.818 40 H 0.186 0.814 41 H 0.065 0.935 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 0.031 -13.573 8.401 15.963 hybrid contribution 0.854 0.908 -1.450 1.912 sum 0.885 -12.666 6.951 14.475 Atomic orbital electron populations 1.69654 1.04788 1.24671 1.59858 1.24551 0.95198 0.96966 1.04134 0.86316 0.79463 0.85269 0.76628 1.20507 1.22585 1.22539 1.19509 0.91859 0.82951 1.38589 0.89183 1.42414 1.05176 0.99187 1.87388 1.19941 0.90892 0.88222 0.91491 1.22740 0.91015 0.87490 0.99203 1.86888 1.50173 1.49510 1.47660 1.21619 0.97760 0.97533 0.98381 1.21860 0.97810 1.03276 0.94062 1.21895 0.89895 0.90965 0.99399 1.47628 1.33779 1.31506 1.18502 1.17778 0.84487 0.80931 0.81859 1.90821 1.31905 1.37478 1.77771 1.20461 0.96783 0.92959 0.97323 1.22328 0.99430 0.97753 0.96522 1.22738 0.92921 0.96462 0.94476 1.67636 1.22639 0.98780 1.28247 1.22797 0.94725 0.97024 0.90460 1.22363 0.98759 0.90542 0.96470 1.98520 1.95078 1.29195 1.74432 1.22183 0.92650 1.02126 0.84213 0.94311 0.78354 0.95888 0.94178 0.80155 0.91980 0.91421 0.90020 0.91384 0.90160 0.91677 0.83615 0.81803 0.81434 0.93476 0.87640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.08 13.06 55.49 0.72 -27.36 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.89 24.07 29.55 -169.99 -5.02 19.04 16 4 H -0.28 -7.53 7.11 56.52 0.40 -7.13 16 5 H -0.30 -8.04 7.11 56.52 0.40 -7.64 16 6 H -0.30 -8.21 7.11 56.52 0.40 -7.81 16 7 C -0.20 -5.39 8.21 -15.06 -0.12 -5.51 16 8 H 0.09 2.57 5.27 -52.49 -0.28 2.29 16 9 N -0.70 -16.39 4.75 -47.12 -0.22 -16.61 16 10 C 0.19 3.41 0.68 -131.70 -0.09 3.32 16 11 C 0.08 1.28 6.08 37.16 0.23 1.51 16 12 O -0.54 -10.11 10.10 -35.23 -0.36 -10.46 16 13 C -0.11 -1.63 4.76 -26.70 -0.13 -1.76 16 14 C -0.13 -1.80 5.91 -26.61 -0.16 -1.96 16 15 C 0.10 1.32 5.58 -3.72 -0.02 1.30 16 16 N -0.58 -10.00 2.89 -173.80 -0.50 -10.50 16 17 C 0.56 10.95 6.71 -12.23 -0.08 10.86 16 18 O -0.51 -11.86 15.73 5.34 0.08 -11.77 16 19 C -0.06 -1.04 4.91 -104.62 -0.51 -1.55 16 20 C -0.14 -1.66 7.55 -39.03 -0.29 -1.96 16 21 C 0.09 0.98 11.17 -17.60 -0.20 0.79 16 22 N -0.46 -6.11 10.33 -13.27 -0.14 -6.25 16 23 C 0.11 1.54 10.99 -17.54 -0.19 1.34 16 24 C -0.05 -0.87 6.38 -38.90 -0.25 -1.12 16 25 Cl 0.00 -0.04 27.58 -51.86 -1.43 -1.47 16 26 C 0.11 2.06 4.84 -3.71 -0.02 2.04 16 27 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 28 H 0.38 9.63 6.42 -40.82 -0.26 9.37 16 29 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.35 4.87 9.12 45.56 0.42 5.29 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.08 1.42 6.75 -51.93 -0.35 1.07 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.08 0.98 4.72 -51.93 -0.25 0.73 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.15 1.32 7.41 -52.48 -0.39 0.93 16 39 H 0.16 1.15 8.06 -52.48 -0.42 0.73 16 40 H 0.17 2.01 8.06 -52.49 -0.42 1.59 16 41 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.11 2.41 5.74 -51.93 -0.30 2.11 16 LS Contribution 351.44 15.07 5.30 5.30 Total: -1.00 -35.03 351.44 -7.85 -42.88 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -4.35 Total: 10.42 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: -1.93 Total: 6.79 kcal Atomic # 7 Polarization: -60.59 SS G_CDS: -0.14 Total: -60.72 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.27 Total: -22.24 kcal Atomic # 14 Polarization: 24.07 SS G_CDS: -5.02 Total: 19.04 kcal Atomic # 17 Polarization: -0.04 SS G_CDS: -1.43 Total: -1.47 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -35.03 -7.85 -42.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717257931.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.988 kcal (2) G-P(sol) polarization free energy of solvation -35.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds