Wall clock time and date at job start Tue Mar 31 2020 22:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 120.00305 * 2 1 4 4 H 1.48491 * 109.46908 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46914 * 300.00508 * 3 2 1 6 6 H 1.48499 * 109.46577 * 60.00120 * 3 2 1 7 7 C 1.38807 * 119.99716 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00259 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00243 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00477 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.52392 * 300.08160 * 10 9 7 12 12 O 1.42900 * 109.47236 * 59.91287 * 11 10 9 13 13 C 1.53035 * 109.49982 * 179.97438 * 10 9 7 14 14 C 1.53033 * 109.54064 * 301.41385 * 13 10 9 15 15 C 1.53193 * 109.31343 * 298.63477 * 14 13 10 16 16 N 1.46915 * 108.77400 * 54.63465 * 15 14 13 17 17 C 1.34779 * 120.63038 * 126.41448 * 16 15 14 18 18 O 1.21531 * 119.99884 * 175.76633 * 17 16 15 19 19 C 1.48071 * 120.00280 * 355.76852 * 17 16 15 20 20 C 1.39862 * 120.93167 * 53.99339 * 19 17 16 21 21 C 1.38087 * 119.02018 * 179.73182 * 20 19 17 22 22 N 1.31846 * 120.93548 * 0.56298 * 21 20 19 23 23 C 1.31750 * 122.07657 * 359.71038 * 22 21 20 24 24 C 1.38361 * 120.87079 * 0.02562 * 23 22 21 25 25 Cl 1.73595 * 120.52143 * 180.02562 * 24 23 22 26 26 C 1.46928 * 118.74180 * 306.39131 * 16 15 14 27 27 H 0.97009 * 119.99594 * 359.97438 * 1 2 3 28 28 H 0.97004 * 120.00235 * 359.97438 * 9 7 2 29 29 H 1.08999 * 109.47308 * 179.91648 * 11 10 9 30 30 H 1.09001 * 109.46977 * 299.91683 * 11 10 9 31 31 H 0.96701 * 113.99877 * 180.02562 * 12 11 10 32 32 H 1.09005 * 109.45952 * 181.39124 * 13 10 9 33 33 H 1.09007 * 109.45912 * 61.43435 * 13 10 9 34 34 H 1.09000 * 109.49793 * 58.58612 * 14 13 10 35 35 H 1.09006 * 109.49608 * 178.68262 * 14 13 10 36 36 H 1.08997 * 109.58734 * 174.42179 * 15 14 13 37 37 H 1.08999 * 109.58661 * 294.84480 * 15 14 13 38 38 H 1.08004 * 120.49086 * 359.97438 * 20 19 17 39 39 H 1.08004 * 119.53215 * 180.25138 * 21 20 19 40 40 H 1.07999 * 119.56289 * 179.97438 * 23 22 21 41 41 H 1.09005 * 109.58190 * 293.82303 * 26 16 15 42 42 H 1.08993 * 109.70512 * 173.46856 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 6 2.9395 -3.7383 -1.2484 12 8 3.8673 -2.6516 -1.2479 13 6 1.0639 -4.8204 0.0001 14 6 0.1603 -4.7211 1.2312 15 6 1.0172 -4.8165 2.4976 16 7 2.0678 -3.7914 2.4359 17 6 2.2323 -2.9150 3.4465 18 8 3.1526 -2.1218 3.4192 19 6 1.2917 -2.9186 4.5901 20 6 1.0418 -4.0903 5.3118 21 6 0.1614 -4.0474 6.3747 22 7 -0.4480 -2.9260 6.7053 23 6 -0.2466 -1.8008 6.0501 24 6 0.6231 -1.7512 4.9751 25 17 0.8821 -0.2636 4.1186 26 6 2.9362 -3.7401 1.2518 27 1 -0.4850 0.8402 0.0004 28 1 0.3554 -2.3881 0.0002 29 1 3.4851 -4.6819 -1.2468 30 1 2.3141 -3.6817 -2.1393 31 1 4.4596 -2.6397 -2.0122 32 1 1.6092 -5.7639 0.0251 33 1 0.4540 -4.7775 -0.9024 34 1 -0.3668 -3.7671 1.2197 35 1 -0.5626 -5.5369 1.2187 36 1 0.3928 -4.6474 3.3748 37 1 1.4736 -5.8046 2.5563 38 1 1.5331 -5.0141 5.0441 39 1 -0.0345 -4.9465 6.9403 40 1 -0.7679 -0.9057 6.3556 41 1 3.5492 -4.6405 1.2090 42 1 3.5798 -2.8622 1.3058 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717257931.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:15 Heat of formation + Delta-G solvation = -46.836839 kcal Electronic energy + Delta-G solvation = -29177.131276 eV Core-core repulsion = 25183.066563 eV Total energy + Delta-G solvation = -3994.064713 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.89780 -40.63879 -39.13393 -37.61269 -37.14862 -35.59645 -34.26296 -33.36328 -32.52259 -32.14218 -30.37654 -27.46731 -26.62657 -25.55364 -24.97797 -24.52962 -22.93884 -21.32981 -19.89134 -19.24796 -18.57190 -17.93248 -17.75501 -17.51235 -17.16238 -16.73076 -16.10005 -16.03037 -15.72353 -15.50210 -15.18118 -15.08400 -14.96657 -14.65870 -14.45838 -14.08357 -13.71084 -13.53532 -13.21952 -13.14156 -13.03923 -12.95455 -12.72387 -12.57098 -12.19947 -12.07165 -11.96337 -11.78731 -11.40062 -11.34597 -11.28019 -10.84309 -10.81951 -10.53664 -10.46463 -10.02998 -9.54109 -8.75960 -7.77354 -4.96189 -0.35202 -0.16842 1.04997 1.34220 1.39119 1.45857 1.57391 2.10319 2.57540 2.63370 3.27425 3.37295 3.44543 3.61357 3.71770 3.73343 3.91584 3.96616 4.07431 4.14148 4.19749 4.32716 4.46774 4.54303 4.59152 4.63198 4.64863 4.78074 4.81206 4.85830 4.93811 5.03430 5.06893 5.20975 5.38317 5.46772 5.53120 5.68163 5.95776 6.44808 6.47993 6.68671 7.16605 7.18861 7.57087 8.25791 8.48462 9.46439 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.010973 B = 0.006370 C = 0.004684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2551.213108 B = 4394.332261 C = 5976.091597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.070 4.070 3 Si 0.921 3.079 4 H -0.282 1.282 5 H -0.297 1.297 6 H -0.312 1.312 7 C -0.160 4.160 8 H 0.077 0.923 9 N -0.707 5.707 10 C 0.174 3.826 11 C 0.076 3.924 12 O -0.574 6.574 13 C -0.108 4.108 14 C -0.129 4.129 15 C 0.096 3.904 16 N -0.581 5.581 17 C 0.554 3.446 18 O -0.565 6.565 19 C -0.084 4.084 20 C -0.122 4.122 21 C 0.110 3.890 22 N -0.469 5.469 23 C 0.111 3.889 24 C -0.079 4.079 25 Cl -0.054 7.054 26 C 0.117 3.883 27 H 0.236 0.764 28 H 0.371 0.629 29 H 0.068 0.932 30 H 0.035 0.965 31 H 0.375 0.625 32 H 0.106 0.894 33 H 0.066 0.934 34 H 0.034 0.966 35 H 0.108 0.892 36 H 0.090 0.910 37 H 0.114 0.886 38 H 0.185 0.815 39 H 0.217 0.783 40 H 0.180 0.820 41 H 0.085 0.915 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.030 -19.727 8.256 21.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.260 4.260 3 Si 0.756 3.244 4 H -0.207 1.207 5 H -0.225 1.225 6 H -0.241 1.241 7 C -0.293 4.293 8 H 0.094 0.906 9 N -0.346 5.346 10 C 0.083 3.917 11 C -0.004 4.004 12 O -0.380 6.380 13 C -0.146 4.146 14 C -0.167 4.167 15 C -0.025 4.025 16 N -0.312 5.312 17 C 0.341 3.659 18 O -0.443 6.443 19 C -0.096 4.096 20 C -0.142 4.142 21 C -0.046 4.046 22 N -0.179 5.179 23 C -0.046 4.046 24 C -0.108 4.108 25 Cl -0.025 7.025 26 C -0.007 4.007 27 H 0.046 0.954 28 H 0.204 0.796 29 H 0.086 0.914 30 H 0.053 0.947 31 H 0.222 0.778 32 H 0.124 0.876 33 H 0.085 0.915 34 H 0.053 0.947 35 H 0.127 0.873 36 H 0.108 0.892 37 H 0.132 0.868 38 H 0.202 0.798 39 H 0.234 0.766 40 H 0.197 0.803 41 H 0.103 0.897 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.235 -18.938 9.388 21.138 hybrid contribution 1.015 2.281 -1.703 3.022 sum 0.780 -16.657 7.685 18.360 Atomic orbital electron populations 1.69729 1.05239 1.23888 1.62960 1.24893 0.95696 0.98553 1.06905 0.85776 0.78637 0.84089 0.75909 1.20719 1.22523 1.24143 1.19513 0.91246 0.84369 1.34188 0.90554 1.42512 1.04763 1.00234 1.87125 1.20446 0.91934 0.87378 0.91972 1.22722 0.91010 0.88820 0.97835 1.86805 1.51078 1.50917 1.49234 1.21632 0.97081 0.97225 0.98643 1.21844 0.98313 1.02324 0.94251 1.22294 0.89117 0.91648 0.99454 1.47809 1.34241 1.31791 1.17309 1.18331 0.84250 0.80347 0.83013 1.90782 1.34456 1.39780 1.79327 1.20453 0.97081 0.94551 0.97487 1.22739 0.98792 0.97220 0.95426 1.23617 0.90517 0.97089 0.93409 1.67781 1.23052 0.99060 1.27957 1.22930 0.93973 0.98205 0.89516 1.22523 1.01360 0.89077 0.97889 1.98494 1.95590 1.32515 1.75857 1.21999 0.92607 1.01455 0.84647 0.95432 0.79630 0.91386 0.94685 0.77776 0.87597 0.91547 0.94740 0.87338 0.89228 0.86799 0.79773 0.76635 0.80343 0.89709 0.92936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.36 13.06 21.65 0.28 -60.08 16 2 C -0.07 -4.23 5.50 84.86 0.47 -3.76 16 3 Si 0.92 51.81 29.55 68.60 2.03 53.84 16 4 H -0.28 -15.67 7.11 99.48 0.71 -14.96 16 5 H -0.30 -16.42 7.11 99.48 0.71 -15.71 16 6 H -0.31 -18.14 7.11 99.48 0.71 -17.43 16 7 C -0.16 -9.04 8.21 84.03 0.69 -8.35 16 8 H 0.08 4.54 5.27 -2.91 -0.02 4.52 16 9 N -0.71 -33.53 4.75 -303.00 -1.44 -34.97 16 10 C 0.17 5.99 0.68 3.68 0.00 6.00 16 11 C 0.08 2.37 6.08 71.98 0.44 2.81 16 12 O -0.57 -21.22 10.10 -148.98 -1.50 -22.72 16 13 C -0.11 -2.62 4.76 30.62 0.15 -2.47 16 14 C -0.13 -3.06 5.91 30.67 0.18 -2.88 16 15 C 0.10 2.05 5.58 86.36 0.48 2.54 16 16 N -0.58 -18.89 2.89 -822.08 -2.38 -21.26 16 17 C 0.55 21.54 6.71 86.85 0.58 22.13 16 18 O -0.56 -27.84 15.73 -3.81 -0.06 -27.90 16 19 C -0.08 -2.67 4.91 -19.87 -0.10 -2.77 16 20 C -0.12 -2.38 7.55 22.63 0.17 -2.21 16 21 C 0.11 1.84 11.17 84.65 0.95 2.79 16 22 N -0.47 -10.94 10.33 -195.91 -2.02 -12.96 16 23 C 0.11 3.08 10.99 84.73 0.93 4.01 16 24 C -0.08 -2.73 6.38 22.71 0.14 -2.58 16 25 Cl -0.05 -2.37 27.58 -2.72 -0.08 -2.44 16 26 C 0.12 4.11 4.84 86.36 0.42 4.53 16 27 H 0.24 14.87 8.31 -92.70 -0.77 14.10 16 28 H 0.37 19.18 6.42 -92.71 -0.60 18.59 16 29 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.37 10.00 9.12 -74.06 -0.68 9.33 16 32 H 0.11 1.72 8.14 -2.38 -0.02 1.70 16 33 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 34 H 0.03 1.16 6.75 -2.39 -0.02 1.14 16 35 H 0.11 1.74 8.14 -2.38 -0.02 1.72 16 36 H 0.09 1.77 4.72 -2.39 -0.01 1.76 16 37 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.19 2.15 7.41 -2.91 -0.02 2.13 16 39 H 0.22 1.41 8.06 -2.91 -0.02 1.38 16 40 H 0.18 4.34 8.06 -2.91 -0.02 4.31 16 41 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 42 H 0.05 2.44 5.74 -2.39 -0.01 2.43 16 Total: -1.00 -85.88 351.44 0.15 -85.73 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: -0.18 Total: 22.99 kcal Atomic # 6 Polarization: 14.28 SS G_CDS: 5.50 Total: 19.78 kcal Atomic # 7 Polarization: -123.72 SS G_CDS: -5.56 Total: -129.27 kcal Atomic # 8 Polarization: -49.06 SS G_CDS: -1.56 Total: -50.62 kcal Atomic # 14 Polarization: 51.81 SS G_CDS: 2.03 Total: 53.84 kcal Atomic # 17 Polarization: -2.37 SS G_CDS: -0.08 Total: -2.44 kcal Total: -85.88 0.15 -85.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717257931.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.891 kcal (2) G-P(sol) polarization free energy of solvation -85.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds