Wall clock time and date at job start Tue Mar 31 2020 22:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30212 * 126.78817 * 2 1 4 4 O 1.20922 * 111.64476 * 180.28135 * 3 2 1 5 5 C 1.34074 * 111.55143 * 359.70732 * 4 3 2 6 6 Cl 1.73601 * 126.79596 * 180.02562 * 5 4 3 7 7 C 1.35673 * 106.40391 * 359.97438 * 5 4 3 8 8 C 1.50701 * 128.01152 * 180.02562 * 7 5 4 9 9 C 1.50703 * 109.47532 * 90.02048 * 8 7 5 10 10 O 1.21283 * 119.99676 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00228 * 180.02562 * 9 8 7 12 12 C 1.46496 * 119.99913 * 179.97438 * 11 9 8 13 13 C 1.50701 * 109.47218 * 179.97438 * 12 11 9 14 14 C 1.29450 * 117.69312 * 94.99764 * 13 12 11 15 15 C 1.50328 * 123.64737 * 180.86052 * 14 13 12 16 16 N 1.46998 * 109.17070 * 349.02195 * 15 14 13 17 17 C 1.36931 * 121.38032 * 222.97029 * 16 15 14 18 18 H 1.07999 * 120.00200 * 155.97036 * 17 16 15 19 19 C 1.38818 * 119.99930 * 335.97418 * 17 16 15 20 20 N 1.31616 * 119.99424 * 344.51156 * 19 17 16 21 21 Si 1.86793 * 120.00033 * 164.51117 * 19 17 16 22 22 H 1.48499 * 109.47596 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47162 * 119.99807 * 21 19 17 24 24 H 1.48498 * 109.47325 * 239.99776 * 21 19 17 25 25 C 1.47341 * 117.24651 * 42.94668 * 16 15 14 26 26 C 1.49966 * 117.69514 * 274.74080 * 13 12 11 27 27 H 1.09004 * 109.47307 * 270.20038 * 1 2 3 28 28 H 1.09001 * 109.47014 * 30.20235 * 1 2 3 29 29 H 1.08996 * 109.46759 * 150.19877 * 1 2 3 30 30 H 1.09007 * 109.47069 * 330.01767 * 8 7 5 31 31 H 1.09003 * 109.46944 * 210.02346 * 8 7 5 32 32 H 0.97001 * 119.99919 * 359.97438 * 11 9 8 33 33 H 1.09007 * 109.47305 * 59.99701 * 12 11 9 34 34 H 1.09003 * 109.47431 * 299.99836 * 12 11 9 35 35 H 1.08000 * 118.17404 * 0.88545 * 14 13 12 36 36 H 1.08997 * 109.52109 * 108.93600 * 15 14 13 37 37 H 1.09001 * 109.51633 * 229.11453 * 15 14 13 38 38 H 0.97005 * 119.99607 * 179.97438 * 20 19 17 39 39 H 1.09003 * 109.78033 * 57.81404 * 25 16 15 40 40 H 1.09001 * 109.77700 * 178.61818 * 25 16 15 41 41 H 1.08997 * 109.31931 * 281.28933 * 26 13 12 42 42 H 1.09009 * 109.31429 * 40.71615 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0428 0.0000 4 8 3.4540 0.7269 -0.0055 5 6 3.6037 -0.6054 -0.0037 6 17 5.1012 -1.4836 -0.0092 7 6 2.3531 -1.1314 0.0046 8 6 1.9580 -2.5857 0.0103 9 6 1.8337 -3.0670 1.4330 10 8 2.0446 -2.3040 2.3519 11 7 1.4881 -4.3452 1.6843 12 6 1.3678 -4.8131 3.0673 13 6 0.9726 -6.2673 3.0731 14 6 1.9173 -7.1471 3.1697 15 6 1.6767 -8.6310 3.1696 16 7 0.2360 -8.8865 3.3105 17 6 -0.2364 -9.8657 4.1429 18 1 -1.2402 -9.8022 4.5363 19 6 0.5749 -10.9401 4.4813 20 7 1.6636 -11.1875 3.7844 21 14 0.1214 -12.0344 5.9256 22 1 -1.1395 -11.5465 6.5397 23 1 -0.0661 -13.4288 5.4503 24 1 1.2097 -11.9978 6.9353 25 6 -0.6788 -8.0450 2.5193 26 6 -0.4878 -6.5932 2.9723 27 1 -0.3634 0.0036 1.0277 28 1 -0.3633 0.8882 -0.5170 29 1 -0.3633 -0.8917 -0.5107 30 1 2.7190 -3.1710 -0.5061 31 1 1.0013 -2.7043 -0.4983 32 1 1.3190 -4.9553 0.9494 33 1 0.6068 -4.2281 3.5840 34 1 2.3247 -4.6942 3.5757 35 1 2.9348 -6.7954 3.2557 36 1 2.0324 -9.0575 2.2317 37 1 2.2107 -9.0866 4.0035 38 1 2.2308 -11.9381 4.0210 39 1 -0.4426 -8.1388 1.4593 40 1 -1.7093 -8.3527 2.6968 41 1 -0.9570 -6.4507 3.9457 42 1 -0.9567 -5.9268 2.2482 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001718029806.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:38 Heat of formation + Delta-G solvation = 39.157486 kcal Electronic energy + Delta-G solvation = -26314.882707 eV Core-core repulsion = 22324.546988 eV Total energy + Delta-G solvation = -3990.335720 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -46.14778 -40.82789 -39.32609 -38.29141 -36.63010 -36.18402 -34.52659 -33.53322 -32.60045 -31.41249 -30.29905 -29.62135 -28.21696 -25.83113 -24.37566 -23.46800 -22.70910 -22.54516 -21.43375 -19.49876 -19.08152 -18.86768 -18.22535 -17.34626 -17.16170 -16.93695 -16.67144 -16.08446 -15.70484 -15.37786 -15.19947 -14.94739 -14.66695 -14.41232 -14.28143 -14.13339 -13.92117 -13.72427 -13.59130 -13.47718 -13.24424 -13.09025 -12.97061 -12.80990 -12.75125 -12.59328 -12.18487 -12.06955 -11.96869 -11.68605 -11.29161 -11.20793 -10.92394 -10.68404 -10.31833 -10.06775 -9.61616 -8.73314 -7.87889 -5.28443 -0.04479 0.11761 0.93980 1.25051 1.46367 1.49027 1.58412 1.64393 2.40596 2.51647 2.57731 2.99748 3.29624 3.46552 3.65317 3.74882 3.75254 3.89022 4.00432 4.07843 4.43085 4.46646 4.56402 4.58332 4.62501 4.68323 4.71447 4.78424 4.79721 4.87724 4.95851 5.13962 5.16683 5.24841 5.39496 5.45481 5.51430 5.63120 5.80340 6.19756 6.35235 6.59590 6.95629 7.14952 7.26428 7.85551 8.38352 9.20634 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.024660 B = 0.002111 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.186193 B =13257.703093 C =13967.412807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.042 3.958 3 N -0.375 5.375 4 O 0.092 5.908 5 C 0.003 3.997 6 Cl 0.060 6.940 7 C -0.154 4.154 8 C -0.063 4.063 9 C 0.515 3.485 10 O -0.581 6.581 11 N -0.709 5.709 12 C 0.169 3.831 13 C -0.137 4.137 14 C -0.143 4.143 15 C 0.205 3.795 16 N -0.616 5.616 17 C -0.254 4.254 18 H 0.070 0.930 19 C -0.055 4.055 20 N -0.939 5.939 21 Si 0.965 3.035 22 H -0.267 1.267 23 H -0.292 1.292 24 H -0.293 1.293 25 C 0.138 3.862 26 C -0.084 4.084 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.112 0.888 30 H 0.134 0.866 31 H 0.153 0.847 32 H 0.416 0.584 33 H 0.068 0.932 34 H 0.057 0.943 35 H 0.111 0.889 36 H 0.015 0.985 37 H 0.054 0.946 38 H 0.249 0.751 39 H 0.032 0.968 40 H 0.057 0.943 41 H 0.061 0.939 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.183 20.449 -12.494 23.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.117 4.117 3 N -0.085 5.085 4 O 0.029 5.971 5 C -0.087 4.087 6 Cl 0.088 6.912 7 C -0.159 4.159 8 C -0.103 4.103 9 C 0.302 3.698 10 O -0.461 6.461 11 N -0.361 5.361 12 C 0.045 3.955 13 C -0.137 4.137 14 C -0.163 4.163 15 C 0.080 3.920 16 N -0.340 5.340 17 C -0.384 4.384 18 H 0.088 0.912 19 C -0.250 4.250 20 N -0.586 5.586 21 Si 0.794 3.206 22 H -0.192 1.192 23 H -0.219 1.219 24 H -0.220 1.220 25 C 0.013 3.987 26 C -0.122 4.122 27 H 0.102 0.898 28 H 0.108 0.892 29 H 0.130 0.870 30 H 0.152 0.848 31 H 0.170 0.830 32 H 0.253 0.747 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.129 0.871 36 H 0.033 0.967 37 H 0.072 0.928 38 H 0.058 0.942 39 H 0.050 0.950 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.346 22.091 -11.798 25.046 hybrid contribution 0.539 -2.040 0.720 2.230 sum 0.885 20.050 -11.079 22.924 Atomic orbital electron populations 1.20421 0.83027 1.05848 1.04359 1.23858 1.00530 0.87398 0.99938 1.73918 0.88812 1.24014 1.21750 1.84867 1.22296 1.21216 1.68723 1.24809 0.91790 0.84878 1.07204 1.98464 1.27689 1.68480 1.96578 1.20402 0.89703 0.97821 1.08020 1.20125 1.07939 0.88319 0.93894 1.20843 0.75749 0.81563 0.91622 1.90729 1.51432 1.55861 1.48066 1.45960 1.69791 1.11321 1.08998 1.20183 1.00668 0.91214 0.83402 1.20603 0.95754 0.93210 1.04175 1.22930 0.98960 0.96207 0.98236 1.19395 0.84892 0.89307 0.98455 1.44424 1.01811 1.38287 1.49508 1.19535 0.99748 0.99036 1.20048 0.91232 1.25709 0.98775 0.98551 1.01931 1.70164 1.17267 1.30717 1.40442 0.85235 0.77657 0.78301 0.79451 1.19169 1.21942 1.21982 1.21201 0.93812 0.90145 0.93557 1.20728 0.92511 0.97358 1.01622 0.89831 0.89243 0.86970 0.84827 0.82953 0.74679 0.91376 0.92464 0.87126 0.96715 0.92783 0.94181 0.95031 0.92392 0.92089 0.88866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.93 10.39 71.24 0.74 -0.19 16 2 C 0.04 0.80 7.32 43.55 0.32 1.12 16 3 N -0.38 -8.88 12.07 -49.43 -0.60 -9.48 16 4 O 0.09 2.15 11.20 71.32 0.80 2.95 16 5 C 0.00 0.07 8.12 67.23 0.55 0.61 16 6 Cl 0.06 1.01 29.23 -2.72 -0.08 0.93 16 7 C -0.15 -2.80 4.82 -19.71 -0.10 -2.89 16 8 C -0.06 -0.77 6.10 29.10 0.18 -0.60 16 9 C 0.51 10.34 7.82 87.66 0.69 11.03 16 10 O -0.58 -17.30 16.03 -3.04 -0.05 -17.35 16 11 N -0.71 -13.18 5.55 -466.78 -2.59 -15.77 16 12 C 0.17 4.15 5.66 85.63 0.48 4.63 16 13 C -0.14 -3.99 5.22 -15.13 -0.08 -4.07 16 14 C -0.14 -4.98 9.47 27.11 0.26 -4.72 16 15 C 0.20 9.46 5.23 85.42 0.45 9.91 16 16 N -0.62 -29.57 3.01 -703.03 -2.11 -31.68 16 17 C -0.25 -13.57 9.71 84.04 0.82 -12.76 16 18 H 0.07 3.63 7.88 -2.91 -0.02 3.60 16 19 C -0.05 -3.01 5.01 84.86 0.43 -2.59 16 20 N -0.94 -54.35 11.08 21.65 0.24 -54.11 16 21 Si 0.96 44.33 29.58 68.60 2.03 46.36 16 22 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 23 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 24 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 25 C 0.14 5.11 6.59 86.31 0.57 5.68 16 26 C -0.08 -2.42 5.95 29.71 0.18 -2.25 16 27 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.11 0.66 7.65 -2.39 -0.02 0.64 16 30 H 0.13 1.10 8.14 -2.38 -0.02 1.08 16 31 H 0.15 0.73 7.65 -2.39 -0.02 0.71 16 32 H 0.42 5.73 8.46 -92.71 -0.78 4.95 16 33 H 0.07 1.72 8.11 -2.38 -0.02 1.70 16 34 H 0.06 1.55 7.78 -2.39 -0.02 1.53 16 35 H 0.11 3.46 7.73 -2.91 -0.02 3.44 16 36 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.05 2.89 6.41 -2.39 -0.02 2.87 16 38 H 0.25 14.00 8.31 -92.70 -0.77 13.23 16 39 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.06 2.11 7.96 -2.39 -0.02 2.09 16 41 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 Total: -1.00 -71.66 371.41 3.38 -68.28 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: 0.28 Total: 6.97 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: 5.47 Total: 2.90 kcal Atomic # 7 Polarization: -105.99 SS G_CDS: -5.06 Total: -111.05 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: 0.75 Total: -14.40 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Atomic # 17 Polarization: 1.01 SS G_CDS: -0.08 Total: 0.93 kcal Total: -71.66 3.38 -68.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718029806.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.434 kcal (2) G-P(sol) polarization free energy of solvation -71.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds