Wall clock time and date at job start Tue Mar 31 2020 22:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 120.00038 * 2 1 4 4 H 1.48500 * 109.47361 * 270.00244 * 3 2 1 5 5 H 1.48501 * 109.46917 * 30.00215 * 3 2 1 6 6 H 1.48503 * 109.47019 * 149.99809 * 3 2 1 7 7 C 1.38817 * 120.00006 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99926 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99957 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00049 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47146 * 180.02562 * 10 9 7 12 12 O 1.42902 * 109.46123 * 65.02959 * 11 10 9 13 13 C 1.53040 * 109.45945 * 305.07039 * 11 10 9 14 14 C 1.53193 * 109.31094 * 178.61693 * 13 11 10 15 15 N 1.46920 * 108.77800 * 54.63620 * 14 13 11 16 16 C 1.34777 * 120.63667 * 126.37086 * 15 14 13 17 17 O 1.21515 * 120.00281 * 179.80702 * 16 15 14 18 18 C 1.48113 * 119.99207 * 359.80832 * 16 15 14 19 19 C 1.39343 * 119.70054 * 201.82753 * 18 16 15 20 20 C 1.38536 * 119.07310 * 179.79503 * 19 18 16 21 21 C 1.38768 * 118.47637 * 0.47756 * 20 19 18 22 22 Cl 1.73599 * 120.33762 * 179.77110 * 21 20 19 23 23 C 1.38722 * 119.32682 * 359.74381 * 21 20 19 24 24 N 1.31492 * 120.87559 * 0.02562 * 23 21 20 25 25 C 1.46934 * 118.73874 * 306.38917 * 15 14 13 26 26 C 1.53042 * 109.45892 * 185.00370 * 11 10 9 27 27 H 0.97000 * 119.99926 * 359.97438 * 1 2 3 28 28 H 0.97006 * 120.00184 * 0.02562 * 9 7 2 29 29 H 1.09000 * 109.46789 * 60.00376 * 10 9 7 30 30 H 1.08998 * 109.47367 * 300.00214 * 10 9 7 31 31 H 0.96694 * 113.99594 * 300.00425 * 12 11 10 32 32 H 1.09005 * 109.49870 * 298.56588 * 13 11 10 33 33 H 1.08999 * 109.50007 * 58.66201 * 13 11 10 34 34 H 1.09006 * 109.58466 * 294.84583 * 14 13 11 35 35 H 1.08998 * 109.58497 * 174.42671 * 14 13 11 36 36 H 1.07998 * 120.46921 * 359.97438 * 19 18 16 37 37 H 1.08000 * 120.75969 * 180.24866 * 20 19 18 38 38 H 1.07999 * 119.56164 * 180.02562 * 23 21 20 39 39 H 1.08996 * 109.58626 * 293.82532 * 25 15 14 40 40 H 1.08990 * 109.58896 * 173.39616 * 25 15 14 41 41 H 1.08996 * 109.49749 * 301.33608 * 26 11 10 42 42 H 1.09001 * 109.49621 * 61.43323 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 6 1.0638 -4.8197 -0.0021 12 8 0.3216 -4.8111 -1.2232 13 6 0.1028 -4.6692 1.1794 14 6 -0.9125 -5.8162 1.1558 15 7 -0.1843 -7.0919 1.1291 16 6 -0.4409 -8.0485 2.0432 17 8 0.1658 -9.1008 2.0082 18 6 -1.4625 -7.8170 3.0904 19 6 -1.4225 -8.5580 4.2698 20 6 -2.3819 -8.3278 5.2423 21 6 -3.3557 -7.3700 4.9975 22 17 -4.5845 -7.0467 6.1803 23 6 -3.3369 -6.6731 3.7982 24 7 -2.4110 -6.9094 2.8948 25 6 0.8294 -7.3051 0.0870 26 6 1.8251 -6.1415 0.1226 27 1 -0.4850 0.8400 0.0004 28 1 0.3555 -2.3881 -0.0005 29 1 2.6853 -3.7149 0.8879 30 1 2.6841 -3.7142 -0.8921 31 1 -0.1862 -4.0013 -1.3690 32 1 0.6655 -4.7006 2.1124 33 1 -0.4221 -3.7170 1.1025 34 1 -1.5370 -5.7331 0.2663 35 1 -1.5365 -5.7702 2.0484 36 1 -0.6527 -9.2995 4.4248 37 1 -2.3742 -8.8837 6.1682 38 1 -4.0927 -5.9265 3.6038 39 1 0.3470 -7.3434 -0.8896 40 1 1.3547 -8.2414 0.2744 41 1 2.5261 -6.2371 -0.7065 42 1 2.3716 -6.1589 1.0656 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724984709.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:49 Heat of formation + Delta-G solvation = -22.637076 kcal Electronic energy + Delta-G solvation = -27301.417023 eV Core-core repulsion = 23308.401690 eV Total energy + Delta-G solvation = -3993.015333 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.24939 -39.72754 -38.37599 -37.11056 -35.59234 -34.03515 -33.21457 -32.15674 -31.61765 -30.81031 -30.26600 -26.90788 -25.08309 -24.32230 -23.54539 -23.16406 -21.90599 -20.58540 -19.48181 -17.82511 -17.61899 -17.38265 -16.85840 -16.17084 -15.69232 -15.47959 -15.17351 -14.97045 -14.50183 -14.31772 -14.18547 -14.03257 -13.83786 -13.37908 -13.21239 -13.02503 -12.78306 -12.65521 -12.39542 -12.15918 -11.82551 -11.79034 -11.44912 -11.11399 -11.04740 -10.94223 -10.84837 -10.49231 -10.34716 -10.29631 -10.15121 -9.74596 -9.64538 -9.44307 -9.10170 -8.94498 -8.54079 -7.01193 -5.84153 -3.12993 0.08111 0.61861 1.48686 2.39815 2.82277 3.30575 3.40030 3.45653 3.46780 3.76074 4.17303 4.22049 4.38029 4.52878 4.57133 4.59848 4.97995 5.00553 5.16347 5.23358 5.31156 5.32372 5.37240 5.51051 5.52685 5.66808 5.72268 5.83267 5.89765 5.98782 6.07791 6.11791 6.26219 6.42487 6.44694 6.61153 6.70791 6.73078 7.11951 7.36699 7.64700 7.97762 8.10715 8.34785 9.45724 9.99760 10.34216 11.38590 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.011756 B = 0.002951 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.237768 B = 9485.488759 C =11345.286397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.012 4.012 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.730 5.730 10 C 0.128 3.872 11 C 0.128 3.872 12 O -0.561 6.561 13 C -0.158 4.158 14 C 0.082 3.918 15 N -0.580 5.580 16 C 0.567 3.433 17 O -0.541 6.541 18 C 0.089 3.911 19 C -0.101 4.101 20 C -0.070 4.070 21 C -0.072 4.072 22 Cl -0.047 7.047 23 C 0.110 3.890 24 N -0.430 5.430 25 C 0.116 3.884 26 C -0.116 4.116 27 H 0.256 0.744 28 H 0.381 0.619 29 H 0.025 0.975 30 H 0.029 0.971 31 H 0.382 0.618 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.134 0.866 36 H 0.157 0.843 37 H 0.153 0.847 38 H 0.176 0.824 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.538 -18.078 10.036 22.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.000 4.000 11 C 0.087 3.913 12 O -0.368 6.368 13 C -0.196 4.196 14 C -0.040 4.040 15 N -0.310 5.310 16 C 0.353 3.647 17 O -0.419 6.419 18 C -0.048 4.048 19 C -0.122 4.122 20 C -0.097 4.097 21 C -0.101 4.101 22 Cl -0.018 7.018 23 C -0.049 4.049 24 N -0.141 5.141 25 C -0.006 4.006 26 C -0.155 4.155 27 H 0.066 0.934 28 H 0.216 0.784 29 H 0.042 0.958 30 H 0.046 0.954 31 H 0.231 0.769 32 H 0.087 0.913 33 H 0.110 0.890 34 H 0.093 0.907 35 H 0.150 0.850 36 H 0.175 0.825 37 H 0.171 0.829 38 H 0.193 0.807 39 H 0.098 0.902 40 H 0.107 0.893 41 H 0.101 0.899 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.892 -18.613 9.249 21.897 hybrid contribution -0.174 1.382 0.969 1.697 sum -7.066 -17.231 10.218 21.242 Atomic orbital electron populations 1.69631 1.05063 1.25800 1.57714 1.24725 0.95560 0.97696 1.02818 0.86177 0.78657 0.83717 0.77554 1.21673 1.21738 1.20790 1.19204 0.91075 0.84027 1.42834 0.91197 1.42332 1.05589 0.99982 1.89660 1.21327 0.93931 0.86096 0.98631 1.21306 0.91229 0.94646 0.84082 1.86359 1.65783 1.44477 1.40191 1.22578 0.98460 0.99382 0.99197 1.22826 0.94454 0.80541 1.06132 1.48032 1.38295 1.16297 1.28376 1.17781 0.82038 0.83993 0.80845 1.90776 1.51275 1.25840 1.73971 1.21380 0.94933 0.93659 0.94874 1.22102 0.98999 0.99042 0.92010 1.21583 0.92241 0.95686 1.00147 1.22357 0.94249 1.00070 0.93471 1.98410 1.52478 1.94604 1.56291 1.23066 0.96201 0.97870 0.87778 1.67879 1.02078 1.13861 1.30329 1.21630 0.89443 0.98877 0.90659 1.21843 0.97570 0.93025 1.03017 0.93436 0.78402 0.95758 0.95360 0.76861 0.91319 0.89035 0.90717 0.85000 0.82526 0.82904 0.80744 0.90213 0.89277 0.89872 0.90500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.07 13.06 55.49 0.72 -26.34 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.24 -6.54 9.99 -15.06 -0.15 -6.69 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.46 16 9 N -0.73 -17.44 5.07 -59.91 -0.30 -17.75 16 10 C 0.13 2.52 5.43 -4.04 -0.02 2.50 16 11 C 0.13 2.06 0.71 -90.58 -0.06 1.99 16 12 O -0.56 -9.23 11.70 -35.23 -0.41 -9.64 16 13 C -0.16 -2.43 4.88 -26.61 -0.13 -2.56 16 14 C 0.08 1.12 5.75 -3.71 -0.02 1.10 16 15 N -0.58 -7.99 2.97 -173.78 -0.52 -8.51 16 16 C 0.57 7.94 7.61 -12.21 -0.09 7.85 16 17 O -0.54 -8.60 15.94 5.35 0.09 -8.52 16 18 C 0.09 1.04 6.45 -83.02 -0.54 0.51 16 19 C -0.10 -0.93 9.62 -39.06 -0.38 -1.31 16 20 C -0.07 -0.52 9.97 -39.28 -0.39 -0.91 16 21 C -0.07 -0.58 6.35 -39.21 -0.25 -0.83 16 22 Cl -0.05 -0.34 28.99 -51.86 -1.50 -1.84 16 23 C 0.11 0.98 10.98 -17.52 -0.19 0.78 16 24 N -0.43 -4.75 6.38 -9.77 -0.06 -4.82 16 25 C 0.12 1.56 6.19 -3.71 -0.02 1.53 16 26 C -0.12 -1.61 5.11 -26.61 -0.14 -1.74 16 27 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 28 H 0.38 9.25 5.55 -40.82 -0.23 9.03 16 29 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.38 6.29 8.19 45.56 0.37 6.66 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.09 1.58 6.53 -51.93 -0.34 1.24 16 34 H 0.07 1.04 7.81 -51.93 -0.41 0.63 16 35 H 0.13 1.72 3.99 -78.48 -0.31 1.40 16 36 H 0.16 1.28 7.80 -52.49 -0.41 0.88 16 37 H 0.15 0.72 8.06 -52.49 -0.42 0.30 16 38 H 0.18 1.17 8.06 -52.49 -0.42 0.75 16 39 H 0.08 1.09 7.81 -51.93 -0.41 0.69 16 40 H 0.09 1.18 7.00 -51.93 -0.36 0.81 16 41 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 357.17 15.07 5.38 5.38 Total: -1.00 -31.26 357.17 -8.70 -39.96 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: -4.59 Total: 13.30 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: -2.48 Total: 1.79 kcal Atomic # 7 Polarization: -57.26 SS G_CDS: -0.16 Total: -57.41 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -0.33 Total: -18.16 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -1.50 Total: -1.84 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.26 -8.70 -39.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724984709.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.326 kcal (2) G-P(sol) polarization free energy of solvation -31.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds