Wall clock time and date at job start Tue Mar 31 2020 22:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 120.00038 * 2 1 4 4 H 1.48500 * 109.47361 * 270.00244 * 3 2 1 5 5 H 1.48501 * 109.46917 * 30.00215 * 3 2 1 6 6 H 1.48503 * 109.47019 * 149.99809 * 3 2 1 7 7 C 1.38817 * 120.00006 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99926 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99957 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00049 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47146 * 180.02562 * 10 9 7 12 12 O 1.42902 * 109.46123 * 65.02959 * 11 10 9 13 13 C 1.53040 * 109.45945 * 305.07039 * 11 10 9 14 14 C 1.53193 * 109.31094 * 178.61693 * 13 11 10 15 15 N 1.46920 * 108.77800 * 54.63620 * 14 13 11 16 16 C 1.34777 * 120.63667 * 126.37086 * 15 14 13 17 17 O 1.21515 * 120.00281 * 179.80702 * 16 15 14 18 18 C 1.48113 * 119.99207 * 359.80832 * 16 15 14 19 19 C 1.39343 * 119.70054 * 201.82753 * 18 16 15 20 20 C 1.38536 * 119.07310 * 179.79503 * 19 18 16 21 21 C 1.38768 * 118.47637 * 0.47756 * 20 19 18 22 22 Cl 1.73599 * 120.33762 * 179.77110 * 21 20 19 23 23 C 1.38722 * 119.32682 * 359.74381 * 21 20 19 24 24 N 1.31492 * 120.87559 * 0.02562 * 23 21 20 25 25 C 1.46934 * 118.73874 * 306.38917 * 15 14 13 26 26 C 1.53042 * 109.45892 * 185.00370 * 11 10 9 27 27 H 0.97000 * 119.99926 * 359.97438 * 1 2 3 28 28 H 0.97006 * 120.00184 * 0.02562 * 9 7 2 29 29 H 1.09000 * 109.46789 * 60.00376 * 10 9 7 30 30 H 1.08998 * 109.47367 * 300.00214 * 10 9 7 31 31 H 0.96694 * 113.99594 * 300.00425 * 12 11 10 32 32 H 1.09005 * 109.49870 * 298.56588 * 13 11 10 33 33 H 1.08999 * 109.50007 * 58.66201 * 13 11 10 34 34 H 1.09006 * 109.58466 * 294.84583 * 14 13 11 35 35 H 1.08998 * 109.58497 * 174.42671 * 14 13 11 36 36 H 1.07998 * 120.46921 * 359.97438 * 19 18 16 37 37 H 1.08000 * 120.75969 * 180.24866 * 20 19 18 38 38 H 1.07999 * 119.56164 * 180.02562 * 23 21 20 39 39 H 1.08996 * 109.58626 * 293.82532 * 25 15 14 40 40 H 1.08990 * 109.58896 * 173.39616 * 25 15 14 41 41 H 1.08996 * 109.49749 * 301.33608 * 26 11 10 42 42 H 1.09001 * 109.49621 * 61.43323 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 6 1.0638 -4.8197 -0.0021 12 8 0.3216 -4.8111 -1.2232 13 6 0.1028 -4.6692 1.1794 14 6 -0.9125 -5.8162 1.1558 15 7 -0.1843 -7.0919 1.1291 16 6 -0.4409 -8.0485 2.0432 17 8 0.1658 -9.1008 2.0082 18 6 -1.4625 -7.8170 3.0904 19 6 -1.4225 -8.5580 4.2698 20 6 -2.3819 -8.3278 5.2423 21 6 -3.3557 -7.3700 4.9975 22 17 -4.5845 -7.0467 6.1803 23 6 -3.3369 -6.6731 3.7982 24 7 -2.4110 -6.9094 2.8948 25 6 0.8294 -7.3051 0.0870 26 6 1.8251 -6.1415 0.1226 27 1 -0.4850 0.8400 0.0004 28 1 0.3555 -2.3881 -0.0005 29 1 2.6853 -3.7149 0.8879 30 1 2.6841 -3.7142 -0.8921 31 1 -0.1862 -4.0013 -1.3690 32 1 0.6655 -4.7006 2.1124 33 1 -0.4221 -3.7170 1.1025 34 1 -1.5370 -5.7331 0.2663 35 1 -1.5365 -5.7702 2.0484 36 1 -0.6527 -9.2995 4.4248 37 1 -2.3742 -8.8837 6.1682 38 1 -4.0927 -5.9265 3.6038 39 1 0.3470 -7.3434 -0.8896 40 1 1.3547 -8.2414 0.2744 41 1 2.5261 -6.2371 -0.7065 42 1 2.3716 -6.1589 1.0656 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724984709.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:48 Heat of formation + Delta-G solvation = -43.587848 kcal Electronic energy + Delta-G solvation = -27302.325517 eV Core-core repulsion = 23308.401690 eV Total energy + Delta-G solvation = -3993.923826 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.13581 -40.76533 -39.57605 -37.74314 -36.89111 -35.80372 -34.00618 -33.42495 -32.86943 -31.86718 -31.78826 -28.39484 -26.29662 -25.20486 -24.89943 -24.32057 -23.25541 -21.78352 -20.61628 -19.44206 -18.79778 -18.28234 -17.61467 -17.33895 -16.96699 -16.72747 -16.53359 -15.98927 -15.81009 -15.75516 -15.19213 -15.07179 -14.99240 -14.81666 -14.38425 -14.33724 -14.15008 -13.67374 -13.42992 -13.23493 -13.13732 -12.92012 -12.78956 -12.68594 -12.39473 -12.25160 -12.19879 -12.07955 -11.97002 -11.47464 -11.31881 -11.05651 -10.97466 -10.92739 -10.20163 -10.10560 -9.67763 -9.02080 -7.96308 -5.24734 -0.67595 -0.03702 0.85213 1.46233 1.48241 1.48911 1.57133 1.82033 2.50195 2.55037 2.90173 3.26502 3.41101 3.43440 3.57716 3.66618 3.70799 3.78394 3.86448 3.96157 4.06684 4.23203 4.35869 4.44460 4.54599 4.57807 4.65304 4.74528 4.78433 4.83001 4.86883 4.96109 5.03403 5.07400 5.16266 5.27168 5.36687 5.49188 5.56860 6.22899 6.25565 6.42390 6.74078 6.92861 7.33443 8.04180 8.30006 9.26282 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.011756 B = 0.002951 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.237768 B = 9485.488759 C =11345.286397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.067 4.067 3 Si 0.970 3.030 4 H -0.288 1.288 5 H -0.294 1.294 6 H -0.273 1.273 7 C -0.248 4.248 8 H 0.070 0.930 9 N -0.736 5.736 10 C 0.128 3.872 11 C 0.136 3.864 12 O -0.561 6.561 13 C -0.148 4.148 14 C 0.093 3.907 15 N -0.583 5.583 16 C 0.565 3.435 17 O -0.565 6.565 18 C 0.064 3.936 19 C -0.098 4.098 20 C -0.059 4.059 21 C -0.068 4.068 22 Cl -0.035 7.035 23 C 0.105 3.895 24 N -0.448 5.448 25 C 0.119 3.881 26 C -0.111 4.111 27 H 0.252 0.748 28 H 0.377 0.623 29 H 0.025 0.975 30 H 0.022 0.978 31 H 0.381 0.619 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.144 0.856 36 H 0.165 0.835 37 H 0.184 0.816 38 H 0.193 0.807 39 H 0.077 0.923 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.734 -18.803 11.322 23.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.260 4.260 3 Si 0.799 3.201 4 H -0.215 1.215 5 H -0.220 1.220 6 H -0.198 1.198 7 C -0.380 4.380 8 H 0.088 0.912 9 N -0.381 5.381 10 C 0.001 3.999 11 C 0.095 3.905 12 O -0.368 6.368 13 C -0.187 4.187 14 C -0.029 4.029 15 N -0.313 5.313 16 C 0.353 3.647 17 O -0.445 6.445 18 C -0.072 4.072 19 C -0.119 4.119 20 C -0.085 4.085 21 C -0.097 4.097 22 Cl -0.006 7.006 23 C -0.054 4.054 24 N -0.160 5.160 25 C -0.003 4.003 26 C -0.149 4.149 27 H 0.061 0.939 28 H 0.211 0.789 29 H 0.043 0.957 30 H 0.040 0.960 31 H 0.230 0.770 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.160 0.840 36 H 0.183 0.817 37 H 0.201 0.799 38 H 0.210 0.790 39 H 0.096 0.904 40 H 0.112 0.888 41 H 0.111 0.889 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.065 -19.362 10.532 23.146 hybrid contribution -0.156 1.556 0.632 1.687 sum -7.221 -17.807 11.165 22.223 Atomic orbital electron populations 1.69766 1.06258 1.26151 1.59054 1.25465 0.96417 1.00712 1.03418 0.85205 0.77724 0.79827 0.77358 1.21543 1.22018 1.19811 1.19543 0.91371 0.85355 1.41747 0.91175 1.42438 1.05588 1.00653 1.89452 1.21446 0.94520 0.85811 0.98079 1.21260 0.90679 0.94336 0.84223 1.86365 1.65688 1.44347 1.40424 1.22445 0.98473 0.99209 0.98570 1.22752 0.93756 0.79772 1.06626 1.48080 1.38361 1.16313 1.28558 1.18140 0.82148 0.83452 0.80970 1.90749 1.52426 1.26633 1.74675 1.21171 0.95287 0.95470 0.95322 1.22227 0.99556 0.98620 0.91477 1.21896 0.90935 0.95101 1.00597 1.22431 0.94355 0.99650 0.93299 1.98421 1.51991 1.94513 1.55699 1.23367 0.96043 0.98226 0.87794 1.67675 1.02660 1.14317 1.31390 1.21587 0.89335 0.98727 0.90626 1.21824 0.97593 0.91718 1.03759 0.93871 0.78852 0.95696 0.95982 0.76986 0.91795 0.91067 0.91061 0.83985 0.81706 0.79861 0.79032 0.90424 0.88845 0.88904 0.89931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.30 13.06 21.65 0.28 -56.02 16 2 C -0.07 -3.74 5.50 84.86 0.47 -3.28 16 3 Si 0.97 45.21 29.55 68.60 2.03 47.24 16 4 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 5 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 6 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 7 C -0.25 -13.54 9.99 84.04 0.84 -12.70 16 8 H 0.07 3.74 7.83 -2.91 -0.02 3.72 16 9 N -0.74 -35.54 5.07 -343.45 -1.74 -37.28 16 10 C 0.13 5.05 5.43 86.38 0.47 5.52 16 11 C 0.14 4.33 0.71 -10.77 -0.01 4.32 16 12 O -0.56 -18.42 11.70 -148.98 -1.74 -20.16 16 13 C -0.15 -4.59 4.88 30.67 0.15 -4.44 16 14 C 0.09 2.50 5.75 86.36 0.50 3.00 16 15 N -0.58 -15.83 2.97 -822.02 -2.44 -18.28 16 16 C 0.57 15.57 7.61 86.87 0.66 16.23 16 17 O -0.57 -17.76 15.94 -3.76 -0.06 -17.82 16 18 C 0.06 1.44 6.45 41.90 0.27 1.71 16 19 C -0.10 -1.65 9.62 22.61 0.22 -1.43 16 20 C -0.06 -0.72 9.97 22.47 0.22 -0.50 16 21 C -0.07 -0.93 6.35 22.51 0.14 -0.79 16 22 Cl -0.04 -0.43 28.99 -2.72 -0.08 -0.50 16 23 C 0.11 1.70 10.98 84.86 0.93 2.63 16 24 N -0.45 -9.52 6.38 -184.82 -1.18 -10.70 16 25 C 0.12 3.12 6.19 86.36 0.53 3.66 16 26 C -0.11 -2.97 5.11 30.67 0.16 -2.81 16 27 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 28 H 0.38 18.68 5.55 -92.70 -0.51 18.17 16 29 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.38 12.72 8.19 -74.06 -0.61 12.11 16 32 H 0.06 2.02 8.14 -2.38 -0.02 2.01 16 33 H 0.07 2.51 6.53 -2.39 -0.02 2.50 16 34 H 0.07 1.97 7.81 -2.38 -0.02 1.95 16 35 H 0.14 3.65 3.99 -54.81 -0.22 3.43 16 36 H 0.17 2.44 7.80 -2.91 -0.02 2.42 16 37 H 0.18 1.06 8.06 -2.91 -0.02 1.04 16 38 H 0.19 2.26 8.06 -2.91 -0.02 2.24 16 39 H 0.08 2.07 7.81 -2.39 -0.02 2.05 16 40 H 0.09 2.40 7.00 -2.39 -0.02 2.38 16 41 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 42 H 0.08 2.13 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -65.94 357.17 0.37 -65.56 By element: Atomic # 1 Polarization: 37.07 SS G_CDS: -0.25 Total: 36.82 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: 5.55 Total: 11.13 kcal Atomic # 7 Polarization: -117.19 SS G_CDS: -5.08 Total: -122.27 kcal Atomic # 8 Polarization: -36.18 SS G_CDS: -1.80 Total: -37.99 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -0.08 Total: -0.50 kcal Total: -65.94 0.37 -65.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724984709.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.977 kcal (2) G-P(sol) polarization free energy of solvation -65.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds