Wall clock time and date at job start Tue Mar 31 2020 22:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 120.00024 * 2 1 4 4 H 1.48502 * 109.47085 * 270.00909 * 3 2 1 5 5 H 1.48496 * 109.46952 * 30.00853 * 3 2 1 6 6 H 1.48496 * 109.47021 * 150.00519 * 3 2 1 7 7 C 1.38811 * 119.99978 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00442 * 359.97438 * 7 2 1 9 9 N 1.36947 * 119.99927 * 179.97438 * 7 2 1 10 10 C 1.46495 * 119.99792 * 179.97438 * 9 7 2 11 11 C 1.53007 * 109.50216 * 59.99646 * 10 9 7 12 12 O 1.42897 * 109.46737 * 304.93502 * 11 10 9 13 13 C 1.53040 * 109.52367 * 180.02562 * 10 9 7 14 14 C 1.53044 * 109.53491 * 58.60258 * 13 10 9 15 15 C 1.53190 * 109.31256 * 61.36756 * 14 13 10 16 16 N 1.46920 * 108.77452 * 305.36096 * 15 14 13 17 17 C 1.34780 * 120.63219 * 233.58560 * 16 15 14 18 18 O 1.21552 * 119.99922 * 174.20450 * 17 16 15 19 19 C 1.47835 * 120.00203 * 354.21175 * 17 16 15 20 20 C 1.39556 * 120.55683 * 139.68397 * 19 17 16 21 21 N 1.31667 * 120.59855 * 180.02562 * 20 19 17 22 22 C 1.31944 * 121.89246 * 0.02562 * 21 20 19 23 23 C 1.38431 * 121.06122 * 359.97438 * 22 21 20 24 24 Cl 1.73604 * 120.35848 * 180.02562 * 23 22 21 25 25 C 1.38508 * 119.28074 * 359.72615 * 23 22 21 26 26 C 1.46925 * 118.74060 * 53.61316 * 16 15 14 27 27 H 0.96997 * 119.99995 * 359.97438 * 1 2 3 28 28 H 0.96992 * 119.99552 * 359.97438 * 9 7 2 29 29 H 1.08997 * 109.46946 * 184.93463 * 11 10 9 30 30 H 1.09003 * 109.46946 * 64.93257 * 11 10 9 31 31 H 0.96697 * 114.00008 * 179.97438 * 12 11 10 32 32 H 1.09003 * 109.46281 * 178.62035 * 13 10 9 33 33 H 1.09001 * 109.46280 * 298.58443 * 13 10 9 34 34 H 1.09004 * 109.49751 * 301.41200 * 14 13 10 35 35 H 1.08998 * 109.49650 * 181.31887 * 14 13 10 36 36 H 1.09005 * 109.58600 * 185.58052 * 15 14 13 37 37 H 1.08992 * 109.58981 * 65.15459 * 15 14 13 38 38 H 1.08004 * 119.70407 * 0.03396 * 20 19 17 39 39 H 1.08003 * 119.46744 * 180.02562 * 22 21 20 40 40 H 1.07998 * 120.86564 * 180.26910 * 25 23 22 41 41 H 1.09000 * 109.59052 * 186.60367 * 26 16 15 42 42 H 1.09005 * 109.70570 * 66.24209 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4975 2.0466 -1.4001 5 1 1.4478 2.6526 0.7002 6 1 3.5478 1.4401 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3797 -1.2021 -0.0011 10 6 4.1122 -2.4708 -0.0011 11 6 3.7425 -3.2741 -1.2498 12 8 2.3240 -3.4368 -1.3087 13 6 5.6170 -2.1926 -0.0011 14 6 5.9837 -1.3607 1.2301 15 6 5.6380 -2.1503 2.4964 16 7 4.2247 -2.5470 2.4353 17 6 3.3840 -2.2509 3.4463 18 8 2.1970 -2.4899 3.3394 19 6 3.9054 -1.6354 4.6851 20 6 3.1939 -0.6210 5.3273 21 7 3.6578 -0.0718 6.4304 22 6 4.8006 -0.4505 6.9703 23 6 5.5660 -1.4501 6.3947 24 17 7.0666 -1.9344 7.1211 25 6 5.1186 -2.0639 5.2365 26 6 3.7452 -3.2731 1.2514 27 1 -0.4850 0.8400 0.0004 28 1 3.8646 -0.3621 -0.0014 29 1 4.2191 -4.2533 -1.2061 30 1 4.0844 -2.7428 -2.1380 31 1 2.0171 -3.9376 -2.0768 32 1 6.1610 -3.1369 0.0237 33 1 5.8848 -1.6430 -0.9035 34 1 5.4215 -0.4269 1.2187 35 1 7.0516 -1.1430 1.2172 36 1 5.8044 -1.5252 3.3737 37 1 6.2650 -3.0399 2.5549 38 1 2.2541 -0.2834 4.9158 39 1 5.1440 0.0266 7.8764 40 1 5.6930 -2.8495 4.7684 41 1 2.6628 -3.3888 1.3071 42 1 4.2159 -4.2553 1.2070 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733823911.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:56 Heat of formation + Delta-G solvation = -14.131012 kcal Electronic energy + Delta-G solvation = -28693.276773 eV Core-core repulsion = 24700.630290 eV Total energy + Delta-G solvation = -3992.646482 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.89580 -39.53375 -37.78514 -36.92215 -35.83735 -34.11637 -32.88715 -32.14367 -31.37452 -31.11739 -29.24864 -26.11223 -25.56935 -24.07176 -23.59663 -23.21936 -21.81571 -20.07978 -18.55845 -17.84197 -17.33168 -17.24266 -16.72594 -16.29268 -15.87005 -15.44066 -14.92208 -14.77267 -14.32077 -14.18497 -14.07983 -13.68465 -13.48019 -13.33197 -13.12377 -12.79472 -12.57102 -12.52565 -12.29724 -12.11530 -11.90071 -11.55141 -11.33595 -11.11536 -10.88827 -10.75286 -10.62737 -10.20599 -10.13355 -9.98322 -9.91052 -9.44361 -9.37828 -9.16242 -8.96374 -8.85382 -8.21784 -7.11112 -5.51233 -2.86378 0.50283 0.75627 1.66530 2.92236 3.18010 3.40980 3.44713 3.52967 3.61665 4.16382 4.36131 4.41995 4.55736 4.65937 4.76200 4.90910 4.98145 4.98752 5.11692 5.15875 5.29796 5.43081 5.49981 5.51655 5.62989 5.71525 5.76528 5.83115 5.88922 5.96350 6.02553 6.08254 6.13229 6.21765 6.46276 6.49184 6.77056 6.92208 7.55343 7.72496 8.28269 8.40056 8.51077 8.68992 9.46406 10.12915 10.27418 11.67491 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.012956 B = 0.004471 C = 0.003891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.699165 B = 6261.250002 C = 7194.303129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.867 3.133 4 H -0.290 1.290 5 H -0.294 1.294 6 H -0.284 1.284 7 C -0.203 4.203 8 H 0.117 0.883 9 N -0.729 5.729 10 C 0.194 3.806 11 C 0.076 3.924 12 O -0.529 6.529 13 C -0.119 4.119 14 C -0.133 4.133 15 C 0.101 3.899 16 N -0.589 5.589 17 C 0.560 3.440 18 O -0.498 6.498 19 C -0.154 4.154 20 C 0.159 3.841 21 N -0.468 5.468 22 C 0.126 3.874 23 C -0.100 4.100 24 Cl -0.054 7.054 25 C -0.041 4.041 26 C 0.110 3.890 27 H 0.253 0.747 28 H 0.357 0.643 29 H 0.025 0.975 30 H 0.037 0.963 31 H 0.353 0.647 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.177 0.823 39 H 0.167 0.833 40 H 0.152 0.848 41 H 0.111 0.889 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.113 -6.794 8.530 21.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.194 4.194 3 Si 0.699 3.301 4 H -0.217 1.217 5 H -0.221 1.221 6 H -0.211 1.211 7 C -0.333 4.333 8 H 0.134 0.866 9 N -0.371 5.371 10 C 0.101 3.899 11 C -0.005 4.005 12 O -0.332 6.332 13 C -0.157 4.157 14 C -0.172 4.172 15 C -0.022 4.022 16 N -0.321 5.321 17 C 0.345 3.655 18 O -0.372 6.372 19 C -0.160 4.160 20 C 0.001 3.999 21 N -0.176 5.176 22 C -0.032 4.032 23 C -0.129 4.129 24 Cl -0.026 7.026 25 C -0.068 4.068 26 C -0.014 4.014 27 H 0.064 0.936 28 H 0.191 0.809 29 H 0.044 0.956 30 H 0.056 0.944 31 H 0.198 0.802 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.194 0.806 39 H 0.184 0.816 40 H 0.170 0.830 41 H 0.129 0.871 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 16.877 -5.998 9.500 20.274 hybrid contribution 1.441 0.425 -0.975 1.791 sum 18.318 -5.573 8.524 20.959 Atomic orbital electron populations 1.69673 1.04776 1.24792 1.59233 1.24604 0.95021 0.96128 1.03643 0.86832 0.79070 0.86898 0.77308 1.21731 1.22099 1.21130 1.19371 0.79830 0.95224 1.38886 0.86568 1.42811 1.04469 1.00556 1.89236 1.19903 0.89793 0.88114 0.92056 1.22636 0.83122 0.96390 0.98391 1.87040 1.20168 1.77567 1.48389 1.21683 0.95703 1.00125 0.98200 1.21887 1.00928 0.99941 0.94419 1.21957 0.82402 0.98801 0.99074 1.47661 1.08844 1.56861 1.18763 1.17785 0.86099 0.79180 0.82407 1.90901 1.14398 1.51657 1.80206 1.21218 0.95782 1.00242 0.98729 1.23239 0.98536 0.89389 0.88698 1.67971 1.12311 1.26649 1.10673 1.23002 0.89390 0.92088 0.98702 1.21957 0.91846 1.01401 0.97667 1.98383 1.30789 1.91021 1.82380 1.21798 0.94042 0.98048 0.92917 1.22190 1.03260 0.91992 0.83919 0.93628 0.80935 0.95648 0.94433 0.80227 0.91392 0.91388 0.90766 0.91068 0.90180 0.91459 0.80590 0.81552 0.83036 0.87074 0.93055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.34 13.97 55.49 0.78 -29.57 16 2 C 0.00 -0.01 5.50 -17.43 -0.10 -0.11 16 3 Si 0.87 22.57 27.74 -169.99 -4.71 17.86 16 4 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 5 H -0.29 -7.92 7.11 56.52 0.40 -7.52 16 6 H -0.28 -6.92 6.52 56.52 0.37 -6.55 16 7 C -0.20 -5.63 8.55 -15.06 -0.13 -5.76 16 8 H 0.12 3.57 5.49 -52.49 -0.29 3.28 16 9 N -0.73 -16.33 4.55 -47.12 -0.21 -16.55 16 10 C 0.19 3.37 0.68 -131.70 -0.09 3.28 16 11 C 0.08 1.23 6.09 37.16 0.23 1.46 16 12 O -0.53 -10.17 10.05 -35.23 -0.35 -10.53 16 13 C -0.12 -1.56 4.76 -26.69 -0.13 -1.68 16 14 C -0.13 -1.68 5.91 -26.61 -0.16 -1.84 16 15 C 0.10 1.22 4.94 -3.71 -0.02 1.20 16 16 N -0.59 -9.56 2.89 -173.89 -0.50 -10.06 16 17 C 0.56 10.33 7.34 -12.33 -0.09 10.24 16 18 O -0.50 -11.60 16.36 5.32 0.09 -11.52 16 19 C -0.15 -2.30 5.12 -104.83 -0.54 -2.84 16 20 C 0.16 2.45 10.82 -17.13 -0.19 2.26 16 21 N -0.47 -6.52 10.34 -12.88 -0.13 -6.66 16 22 C 0.13 1.40 10.97 -17.43 -0.19 1.21 16 23 C -0.10 -1.04 6.34 -39.41 -0.25 -1.29 16 24 Cl -0.05 -0.47 28.99 -51.86 -1.50 -1.97 16 25 C -0.04 -0.47 7.32 -38.83 -0.28 -0.76 16 26 C 0.11 1.94 4.93 -3.71 -0.02 1.92 16 27 H 0.25 7.93 8.31 -40.82 -0.34 7.60 16 28 H 0.36 8.07 4.29 -40.82 -0.18 7.90 16 29 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.35 5.10 9.12 45.56 0.42 5.52 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 1.17 6.75 -51.93 -0.35 0.82 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.91 4.76 -51.93 -0.25 0.66 16 37 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 38 H 0.18 2.90 8.06 -52.48 -0.42 2.48 16 39 H 0.17 1.35 8.06 -52.48 -0.42 0.93 16 40 H 0.15 1.44 6.70 -52.49 -0.35 1.09 16 41 H 0.11 2.49 5.81 -51.93 -0.30 2.19 16 42 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 349.23 15.07 5.26 5.26 Total: -1.00 -36.05 349.23 -7.52 -43.57 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -4.27 Total: 12.88 kcal Atomic # 6 Polarization: 9.23 SS G_CDS: -1.95 Total: 7.28 kcal Atomic # 7 Polarization: -62.76 SS G_CDS: -0.08 Total: -62.83 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.27 Total: -22.04 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -4.71 Total: 17.86 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -1.50 Total: -1.97 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -36.05 -7.52 -43.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733823911.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.435 kcal (2) G-P(sol) polarization free energy of solvation -36.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds