Wall clock time and date at job start Tue Mar 31 2020 22:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 120.00024 * 2 1 4 4 H 1.48502 * 109.47085 * 270.00909 * 3 2 1 5 5 H 1.48496 * 109.46952 * 30.00853 * 3 2 1 6 6 H 1.48496 * 109.47021 * 150.00519 * 3 2 1 7 7 C 1.38811 * 119.99978 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00442 * 359.97438 * 7 2 1 9 9 N 1.36947 * 119.99927 * 179.97438 * 7 2 1 10 10 C 1.46495 * 119.99792 * 179.97438 * 9 7 2 11 11 C 1.53007 * 109.50216 * 59.99646 * 10 9 7 12 12 O 1.42897 * 109.46737 * 304.93502 * 11 10 9 13 13 C 1.53040 * 109.52367 * 180.02562 * 10 9 7 14 14 C 1.53044 * 109.53491 * 58.60258 * 13 10 9 15 15 C 1.53190 * 109.31256 * 61.36756 * 14 13 10 16 16 N 1.46920 * 108.77452 * 305.36096 * 15 14 13 17 17 C 1.34780 * 120.63219 * 233.58560 * 16 15 14 18 18 O 1.21552 * 119.99922 * 174.20450 * 17 16 15 19 19 C 1.47835 * 120.00203 * 354.21175 * 17 16 15 20 20 C 1.39556 * 120.55683 * 139.68397 * 19 17 16 21 21 N 1.31667 * 120.59855 * 180.02562 * 20 19 17 22 22 C 1.31944 * 121.89246 * 0.02562 * 21 20 19 23 23 C 1.38431 * 121.06122 * 359.97438 * 22 21 20 24 24 Cl 1.73604 * 120.35848 * 180.02562 * 23 22 21 25 25 C 1.38508 * 119.28074 * 359.72615 * 23 22 21 26 26 C 1.46925 * 118.74060 * 53.61316 * 16 15 14 27 27 H 0.96997 * 119.99995 * 359.97438 * 1 2 3 28 28 H 0.96992 * 119.99552 * 359.97438 * 9 7 2 29 29 H 1.08997 * 109.46946 * 184.93463 * 11 10 9 30 30 H 1.09003 * 109.46946 * 64.93257 * 11 10 9 31 31 H 0.96697 * 114.00008 * 179.97438 * 12 11 10 32 32 H 1.09003 * 109.46281 * 178.62035 * 13 10 9 33 33 H 1.09001 * 109.46280 * 298.58443 * 13 10 9 34 34 H 1.09004 * 109.49751 * 301.41200 * 14 13 10 35 35 H 1.08998 * 109.49650 * 181.31887 * 14 13 10 36 36 H 1.09005 * 109.58600 * 185.58052 * 15 14 13 37 37 H 1.08992 * 109.58981 * 65.15459 * 15 14 13 38 38 H 1.08004 * 119.70407 * 0.03396 * 20 19 17 39 39 H 1.08003 * 119.46744 * 180.02562 * 22 21 20 40 40 H 1.07998 * 120.86564 * 180.26910 * 25 23 22 41 41 H 1.09000 * 109.59052 * 186.60367 * 26 16 15 42 42 H 1.09005 * 109.70570 * 66.24209 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4975 2.0466 -1.4001 5 1 1.4478 2.6526 0.7002 6 1 3.5478 1.4401 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3797 -1.2021 -0.0011 10 6 4.1122 -2.4708 -0.0011 11 6 3.7425 -3.2741 -1.2498 12 8 2.3240 -3.4368 -1.3087 13 6 5.6170 -2.1926 -0.0011 14 6 5.9837 -1.3607 1.2301 15 6 5.6380 -2.1503 2.4964 16 7 4.2247 -2.5470 2.4353 17 6 3.3840 -2.2509 3.4463 18 8 2.1970 -2.4899 3.3394 19 6 3.9054 -1.6354 4.6851 20 6 3.1939 -0.6210 5.3273 21 7 3.6578 -0.0718 6.4304 22 6 4.8006 -0.4505 6.9703 23 6 5.5660 -1.4501 6.3947 24 17 7.0666 -1.9344 7.1211 25 6 5.1186 -2.0639 5.2365 26 6 3.7452 -3.2731 1.2514 27 1 -0.4850 0.8400 0.0004 28 1 3.8646 -0.3621 -0.0014 29 1 4.2191 -4.2533 -1.2061 30 1 4.0844 -2.7428 -2.1380 31 1 2.0171 -3.9376 -2.0768 32 1 6.1610 -3.1369 0.0237 33 1 5.8848 -1.6430 -0.9035 34 1 5.4215 -0.4269 1.2187 35 1 7.0516 -1.1430 1.2172 36 1 5.8044 -1.5252 3.3737 37 1 6.2650 -3.0399 2.5549 38 1 2.2541 -0.2834 4.9158 39 1 5.1440 0.0266 7.8764 40 1 5.6930 -2.8495 4.7684 41 1 2.6628 -3.3888 1.3071 42 1 4.2159 -4.2553 1.2070 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733823911.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:55 Heat of formation + Delta-G solvation = -43.687160 kcal Electronic energy + Delta-G solvation = -28694.558423 eV Core-core repulsion = 24700.630290 eV Total energy + Delta-G solvation = -3993.928133 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.04170 -40.73582 -39.20371 -37.73192 -37.20640 -35.71149 -34.37701 -33.45997 -32.70085 -32.33579 -30.97483 -27.39127 -26.71439 -25.31478 -25.03453 -24.68556 -22.96543 -21.36407 -19.98907 -19.67806 -18.53274 -18.26199 -17.86974 -17.78640 -17.19448 -16.67439 -16.25360 -16.09980 -15.85776 -15.65120 -15.25845 -14.90244 -14.76293 -14.57085 -14.51917 -14.29597 -13.90273 -13.66404 -13.52549 -13.40717 -13.12952 -13.02481 -12.74082 -12.55015 -12.32068 -12.12583 -11.96568 -11.84318 -11.40681 -11.37289 -11.33149 -10.93637 -10.87615 -10.57229 -10.54122 -10.15898 -9.64494 -9.05977 -7.79802 -5.10254 -0.53184 -0.21372 0.81922 1.27813 1.34278 1.40690 1.61897 1.99561 2.48905 2.57024 3.15417 3.32102 3.38387 3.49512 3.54855 3.56984 3.72531 3.88839 3.95517 4.03226 4.09951 4.17534 4.28918 4.50209 4.56609 4.58856 4.63765 4.71489 4.72831 4.79689 4.85954 4.98692 5.01265 5.12470 5.19147 5.40269 5.41513 5.64003 6.15882 6.39711 6.48389 6.57220 7.14179 7.17167 7.35125 8.01840 8.16825 9.43479 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.012956 B = 0.004471 C = 0.003891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.699165 B = 6261.250002 C = 7194.303129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.997 5.997 2 C -0.086 4.086 3 Si 0.934 3.066 4 H -0.284 1.284 5 H -0.312 1.312 6 H -0.258 1.258 7 C -0.155 4.155 8 H 0.080 0.920 9 N -0.732 5.732 10 C 0.179 3.821 11 C 0.072 3.928 12 O -0.571 6.571 13 C -0.112 4.112 14 C -0.133 4.133 15 C 0.093 3.907 16 N -0.586 5.586 17 C 0.551 3.449 18 O -0.570 6.570 19 C -0.167 4.167 20 C 0.138 3.862 21 N -0.485 5.485 22 C 0.133 3.867 23 C -0.089 4.089 24 Cl -0.024 7.024 25 C -0.024 4.024 26 C 0.113 3.887 27 H 0.244 0.756 28 H 0.358 0.642 29 H 0.070 0.930 30 H 0.042 0.958 31 H 0.371 0.629 32 H 0.111 0.889 33 H 0.075 0.925 34 H 0.035 0.965 35 H 0.115 0.885 36 H 0.088 0.912 37 H 0.115 0.885 38 H 0.146 0.854 39 H 0.201 0.799 40 H 0.180 0.820 41 H 0.050 0.950 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.376 -7.846 9.389 27.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.652 5.652 2 C -0.274 4.274 3 Si 0.765 3.235 4 H -0.211 1.211 5 H -0.240 1.240 6 H -0.183 1.183 7 C -0.286 4.286 8 H 0.097 0.903 9 N -0.374 5.374 10 C 0.088 3.912 11 C -0.008 4.008 12 O -0.377 6.377 13 C -0.149 4.149 14 C -0.171 4.171 15 C -0.028 4.028 16 N -0.316 5.316 17 C 0.338 3.662 18 O -0.449 6.449 19 C -0.173 4.173 20 C -0.019 4.019 21 N -0.193 5.193 22 C -0.025 4.025 23 C -0.118 4.118 24 Cl 0.005 6.995 25 C -0.051 4.051 26 C -0.011 4.011 27 H 0.053 0.947 28 H 0.191 0.809 29 H 0.087 0.913 30 H 0.061 0.939 31 H 0.218 0.782 32 H 0.129 0.871 33 H 0.093 0.907 34 H 0.054 0.946 35 H 0.133 0.867 36 H 0.107 0.893 37 H 0.133 0.867 38 H 0.163 0.837 39 H 0.217 0.783 40 H 0.197 0.803 41 H 0.069 0.931 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 23.284 -7.094 10.332 26.443 hybrid contribution -0.337 0.547 -1.161 1.327 sum 22.947 -6.546 9.171 25.564 Atomic orbital electron populations 1.69892 1.06954 1.24885 1.63475 1.25323 0.95816 1.00056 1.06229 0.85695 0.78461 0.81959 0.77422 1.21119 1.24014 1.18297 1.19217 0.82288 0.93370 1.33751 0.90269 1.42831 1.02554 1.02994 1.89010 1.20458 0.92696 0.85816 0.92238 1.22730 0.81849 0.98545 0.97675 1.86972 1.22522 1.78366 1.49801 1.21713 0.91800 1.02563 0.98873 1.21927 1.02998 0.98039 0.94150 1.22392 0.79906 1.01013 0.99487 1.47837 1.10601 1.55743 1.17457 1.18388 0.85502 0.78431 0.83842 1.90864 1.17494 1.54748 1.81801 1.20847 0.97613 1.00936 0.97915 1.22882 0.98251 0.90784 0.89948 1.67951 1.13916 1.27218 1.10209 1.23578 0.88122 0.91749 0.99094 1.21947 0.92566 1.00387 0.96897 1.98406 1.28692 1.90668 1.81769 1.21954 0.92395 0.97900 0.92837 1.22025 1.00208 0.94221 0.84621 0.94721 0.80856 0.91254 0.93949 0.78150 0.87060 0.90659 0.94586 0.86680 0.89341 0.86726 0.83683 0.78253 0.80288 0.93096 0.89076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -1.00 -69.46 13.97 21.65 0.30 -69.15 16 2 C -0.09 -5.43 5.50 84.86 0.47 -4.97 16 3 Si 0.93 48.87 27.74 68.60 1.90 50.77 16 4 H -0.28 -14.42 7.11 99.48 0.71 -13.71 16 5 H -0.31 -17.12 7.11 99.48 0.71 -16.41 16 6 H -0.26 -12.08 6.52 99.48 0.65 -11.43 16 7 C -0.15 -8.98 8.55 84.03 0.72 -8.27 16 8 H 0.08 5.23 5.49 -2.91 -0.02 5.21 16 9 N -0.73 -32.82 4.55 -302.98 -1.38 -34.20 16 10 C 0.18 5.83 0.68 3.69 0.00 5.84 16 11 C 0.07 2.18 6.09 71.98 0.44 2.62 16 12 O -0.57 -22.43 10.05 -148.98 -1.50 -23.92 16 13 C -0.11 -2.34 4.76 30.62 0.15 -2.20 16 14 C -0.13 -2.68 5.91 30.67 0.18 -2.50 16 15 C 0.09 1.81 4.94 86.36 0.43 2.23 16 16 N -0.59 -18.22 2.89 -822.33 -2.38 -20.60 16 17 C 0.55 21.03 7.34 86.78 0.64 21.66 16 18 O -0.57 -29.01 16.36 -3.88 -0.06 -29.07 16 19 C -0.17 -5.01 5.12 -20.00 -0.10 -5.12 16 20 C 0.14 4.50 10.82 85.04 0.92 5.42 16 21 N -0.48 -13.39 10.34 -194.67 -2.01 -15.41 16 22 C 0.13 2.59 10.97 84.72 0.93 3.52 16 23 C -0.09 -1.54 6.34 22.38 0.14 -1.40 16 24 Cl -0.02 -0.31 28.99 -2.72 -0.08 -0.38 16 25 C -0.02 -0.49 7.32 22.76 0.17 -0.32 16 26 C 0.11 3.88 4.93 86.36 0.43 4.31 16 27 H 0.24 16.47 8.31 -92.71 -0.77 15.70 16 28 H 0.36 15.87 4.29 -92.71 -0.40 15.47 16 29 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.37 10.96 9.12 -74.06 -0.68 10.29 16 32 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.04 1.02 6.75 -2.38 -0.02 1.00 16 35 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.09 1.61 4.76 -2.38 -0.01 1.59 16 37 H 0.11 1.26 8.13 -2.39 -0.02 1.24 16 38 H 0.15 5.47 8.06 -2.91 -0.02 5.44 16 39 H 0.20 2.46 8.06 -2.91 -0.02 2.44 16 40 H 0.18 2.51 6.70 -2.91 -0.02 2.49 16 41 H 0.05 2.41 5.81 -2.39 -0.01 2.39 16 42 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16 Total: -1.00 -90.26 349.23 0.25 -90.01 By element: Atomic # 1 Polarization: 31.18 SS G_CDS: -0.04 Total: 31.13 kcal Atomic # 6 Polarization: 15.32 SS G_CDS: 5.50 Total: 20.82 kcal Atomic # 7 Polarization: -133.89 SS G_CDS: -5.47 Total: -139.36 kcal Atomic # 8 Polarization: -51.43 SS G_CDS: -1.56 Total: -52.99 kcal Atomic # 14 Polarization: 48.87 SS G_CDS: 1.90 Total: 50.77 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -0.08 Total: -0.38 kcal Total: -90.26 0.25 -90.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733823911.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.322 kcal (2) G-P(sol) polarization free energy of solvation -90.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds