Wall clock time and date at job start Tue Mar 31 2020 22:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 120.00057 * 2 1 4 4 H 1.48497 * 109.47357 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46985 * 299.99875 * 3 2 1 6 6 H 1.48506 * 109.47157 * 59.99792 * 3 2 1 7 7 C 1.38816 * 120.00053 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00166 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99761 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99511 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.49744 * 299.93232 * 10 9 7 12 12 O 1.42904 * 109.47223 * 60.06971 * 11 10 9 13 13 C 1.53043 * 109.49617 * 179.83933 * 10 9 7 14 14 C 1.53044 * 109.53543 * 301.41256 * 13 10 9 15 15 C 1.53628 * 109.24047 * 298.51043 * 14 13 10 16 16 N 1.46917 * 108.54187 * 54.85921 * 15 14 13 17 17 C 1.34777 * 120.63134 * 126.37199 * 16 15 14 18 18 O 1.21555 * 120.00079 * 185.55190 * 17 16 15 19 19 C 1.47843 * 120.00125 * 5.54596 * 17 16 15 20 20 C 1.39556 * 120.55482 * 221.03147 * 19 17 16 21 21 N 1.31668 * 120.59164 * 180.27992 * 20 19 17 22 22 C 1.31947 * 121.89640 * 359.46880 * 21 20 19 23 23 C 1.38428 * 121.05842 * 0.52769 * 22 21 20 24 24 Cl 1.73595 * 120.35606 * 179.72116 * 23 22 21 25 25 C 1.38505 * 119.28233 * 359.74934 * 23 22 21 26 26 C 1.46932 * 118.74037 * 306.08844 * 16 15 14 27 27 H 0.97003 * 120.00239 * 0.02562 * 1 2 3 28 28 H 0.96998 * 119.99862 * 359.97438 * 9 7 2 29 29 H 1.08999 * 109.47443 * 180.02562 * 11 10 9 30 30 H 1.09001 * 109.47588 * 300.06551 * 11 10 9 31 31 H 0.96699 * 113.99722 * 180.02562 * 12 11 10 32 32 H 1.09001 * 109.45984 * 61.43015 * 13 10 9 33 33 H 1.08996 * 109.46134 * 181.39074 * 13 10 9 34 34 H 1.09001 * 109.49768 * 58.58727 * 14 13 10 35 35 H 1.08998 * 109.49747 * 178.64935 * 14 13 10 36 36 H 1.08995 * 109.73839 * 295.11609 * 15 14 13 37 37 H 1.08999 * 109.66046 * 174.54827 * 15 14 13 38 38 H 1.07996 * 119.70492 * 359.97438 * 20 19 17 39 39 H 1.07993 * 119.46742 * 180.27260 * 22 21 20 40 40 H 1.08000 * 120.86781 * 180.02562 * 25 23 22 41 41 H 1.08993 * 109.58594 * 173.64884 * 26 16 15 42 42 H 1.08993 * 109.58817 * 293.93573 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 2.9376 -3.7397 -1.2474 12 8 3.8675 -2.6546 -1.2482 13 6 1.0641 -4.8205 0.0055 14 6 0.1622 -4.7191 1.2377 15 6 1.0244 -4.8160 2.5055 16 7 2.0713 -3.7874 2.4383 17 6 2.2371 -2.9093 3.4473 18 8 3.0376 -2.0012 3.3373 19 6 1.4453 -3.0505 4.6878 20 6 0.9114 -1.9270 5.3204 21 7 0.2107 -2.0514 6.4282 22 6 -0.0235 -3.2285 6.9765 23 6 0.4710 -4.3911 6.4107 24 17 0.1578 -5.9295 7.1514 25 6 1.2190 -4.3134 5.2475 26 6 2.9381 -3.7380 1.2530 27 1 -0.4851 0.8401 -0.0004 28 1 0.3555 -2.3880 0.0005 29 1 3.4821 -4.6839 -1.2465 30 1 2.3111 -3.6819 -2.1375 31 1 4.4585 -2.6437 -2.0135 32 1 0.4531 -4.7791 -0.8962 33 1 1.6096 -5.7638 0.0313 34 1 -0.3650 -3.7652 1.2252 35 1 -0.5610 -5.5346 1.2273 36 1 1.4844 -5.8024 2.5634 37 1 0.4031 -4.6480 3.3853 38 1 1.0785 -0.9463 4.9002 39 1 -0.6070 -3.2854 7.8834 40 1 1.6169 -5.2041 4.7841 41 1 3.5799 -2.8587 1.3060 42 1 3.5529 -4.6371 1.2121 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733823912.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:58 Heat of formation + Delta-G solvation = -48.222714 kcal Electronic energy + Delta-G solvation = -28617.459842 eV Core-core repulsion = 24623.335033 eV Total energy + Delta-G solvation = -3994.124809 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.00442 -40.68050 -39.13786 -37.71790 -37.18557 -35.66019 -34.36157 -33.39741 -32.54570 -32.28935 -30.38941 -27.37509 -26.69005 -25.59185 -25.03373 -24.66618 -22.96207 -21.30611 -19.92749 -19.24920 -18.47728 -18.25115 -17.84800 -17.75154 -17.16108 -16.73351 -16.14050 -16.06545 -15.78745 -15.61132 -15.23883 -14.99262 -14.79788 -14.53023 -14.37083 -14.26628 -13.66443 -13.64640 -13.50991 -13.22948 -13.10736 -12.93124 -12.70155 -12.57146 -12.30884 -12.04059 -12.00394 -11.80787 -11.40931 -11.34949 -11.30023 -10.91115 -10.86173 -10.55707 -10.53942 -10.13775 -9.55780 -8.79478 -7.80385 -5.00903 -0.50432 -0.19179 0.83394 1.39681 1.44189 1.52297 1.62969 2.03465 2.51909 2.64797 3.17561 3.35103 3.43001 3.51202 3.57107 3.69460 3.89720 3.93329 3.97952 4.06614 4.13721 4.22471 4.32520 4.52165 4.58879 4.60624 4.63873 4.73534 4.76682 4.84029 4.91813 5.02028 5.05977 5.16321 5.22591 5.46117 5.51280 5.67233 5.93820 6.41993 6.45813 6.59344 7.16530 7.18809 7.53824 8.23365 8.44898 9.44230 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.012930 B = 0.004359 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.983316 B = 6421.692754 C = 7664.744052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.978 5.978 2 C -0.089 4.089 3 Si 0.942 3.058 4 H -0.278 1.278 5 H -0.297 1.297 6 H -0.309 1.309 7 C -0.161 4.161 8 H 0.082 0.918 9 N -0.710 5.710 10 C 0.174 3.826 11 C 0.076 3.924 12 O -0.575 6.575 13 C -0.109 4.109 14 C -0.129 4.129 15 C 0.096 3.904 16 N -0.583 5.583 17 C 0.555 3.445 18 O -0.573 6.573 19 C -0.167 4.167 20 C 0.140 3.860 21 N -0.485 5.485 22 C 0.132 3.868 23 C -0.089 4.089 24 Cl -0.025 7.025 25 C -0.025 4.025 26 C 0.114 3.886 27 H 0.239 0.761 28 H 0.370 0.630 29 H 0.070 0.930 30 H 0.034 0.966 31 H 0.376 0.624 32 H 0.066 0.934 33 H 0.107 0.893 34 H 0.035 0.965 35 H 0.108 0.892 36 H 0.113 0.887 37 H 0.087 0.913 38 H 0.145 0.855 39 H 0.201 0.799 40 H 0.179 0.821 41 H 0.055 0.945 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.548 -21.404 9.339 23.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.279 4.279 3 Si 0.777 3.223 4 H -0.204 1.204 5 H -0.225 1.225 6 H -0.238 1.238 7 C -0.294 4.294 8 H 0.100 0.900 9 N -0.349 5.349 10 C 0.082 3.918 11 C -0.004 4.004 12 O -0.381 6.381 13 C -0.146 4.146 14 C -0.167 4.167 15 C -0.025 4.025 16 N -0.313 5.313 17 C 0.342 3.658 18 O -0.453 6.453 19 C -0.172 4.172 20 C -0.017 4.017 21 N -0.193 5.193 22 C -0.026 4.026 23 C -0.118 4.118 24 Cl 0.004 6.996 25 C -0.052 4.052 26 C -0.010 4.010 27 H 0.048 0.952 28 H 0.203 0.797 29 H 0.088 0.912 30 H 0.053 0.947 31 H 0.223 0.777 32 H 0.085 0.915 33 H 0.125 0.875 34 H 0.054 0.946 35 H 0.126 0.874 36 H 0.131 0.869 37 H 0.105 0.895 38 H 0.163 0.837 39 H 0.217 0.783 40 H 0.196 0.804 41 H 0.074 0.926 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.474 -20.079 10.272 22.559 hybrid contribution 0.597 1.078 -1.182 1.708 sum 1.070 -19.001 9.090 21.090 Atomic orbital electron populations 1.69768 1.05763 1.24389 1.63416 1.25147 0.95992 0.99668 1.07067 0.85454 0.78358 0.82638 0.75894 1.20367 1.22485 1.23828 1.19661 0.91559 0.84405 1.33798 0.90022 1.42566 1.04801 1.00405 1.87145 1.20458 0.91956 0.87244 0.92117 1.22723 0.91003 0.88934 0.97772 1.86794 1.51029 1.51040 1.49188 1.21641 0.97114 0.97281 0.98596 1.21923 0.98267 1.02402 0.94126 1.22428 0.89115 0.91619 0.99338 1.47814 1.34263 1.31795 1.17465 1.18327 0.82387 0.81332 0.83756 1.90795 1.39286 1.33285 1.81957 1.20849 1.02967 0.95505 0.97900 1.22850 0.90300 0.98590 0.89920 1.67940 1.14231 1.27156 1.10011 1.23565 0.94595 0.85259 0.99184 1.21938 1.03170 0.89904 0.96809 1.98402 1.94299 1.25784 1.81111 1.21941 0.93338 0.97151 0.92753 1.22039 0.92647 1.01702 0.84660 0.95239 0.79715 0.91225 0.94725 0.77692 0.91507 0.87492 0.94585 0.87351 0.86877 0.89528 0.83741 0.78275 0.80413 0.92634 0.89367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.56 13.06 21.65 0.28 -62.27 16 2 C -0.09 -5.46 5.50 84.86 0.47 -4.99 16 3 Si 0.94 51.83 29.55 68.60 2.03 53.86 16 4 H -0.28 -14.97 7.11 99.48 0.71 -14.27 16 5 H -0.30 -16.01 7.11 99.48 0.71 -15.31 16 6 H -0.31 -17.47 7.11 99.48 0.71 -16.76 16 7 C -0.16 -9.17 8.21 84.03 0.69 -8.48 16 8 H 0.08 4.82 5.28 -2.91 -0.02 4.80 16 9 N -0.71 -34.01 4.75 -303.00 -1.44 -35.45 16 10 C 0.17 5.97 0.68 3.68 0.00 5.97 16 11 C 0.08 2.34 6.08 71.98 0.44 2.78 16 12 O -0.57 -20.95 10.11 -148.98 -1.51 -22.46 16 13 C -0.11 -2.64 4.76 30.62 0.15 -2.49 16 14 C -0.13 -3.09 5.93 30.82 0.18 -2.90 16 15 C 0.10 2.10 4.98 86.51 0.43 2.53 16 16 N -0.58 -18.88 2.88 -821.49 -2.37 -21.24 16 17 C 0.55 21.46 7.33 86.79 0.64 22.10 16 18 O -0.57 -28.48 16.37 -3.89 -0.06 -28.54 16 19 C -0.17 -5.16 5.11 -20.00 -0.10 -5.26 16 20 C 0.14 4.71 10.82 85.04 0.92 5.63 16 21 N -0.49 -13.95 10.34 -194.68 -2.01 -15.96 16 22 C 0.13 2.73 10.97 84.72 0.93 3.66 16 23 C -0.09 -1.65 6.34 22.38 0.14 -1.51 16 24 Cl -0.02 -0.34 28.98 -2.72 -0.08 -0.42 16 25 C -0.03 -0.54 7.32 22.76 0.17 -0.37 16 26 C 0.11 3.95 4.86 86.36 0.42 4.37 16 27 H 0.24 15.15 8.31 -92.71 -0.77 14.38 16 28 H 0.37 19.35 6.43 -92.71 -0.60 18.76 16 29 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.38 9.81 9.12 -74.06 -0.68 9.13 16 32 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.04 1.21 6.75 -2.39 -0.02 1.20 16 35 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.09 1.80 4.77 -2.39 -0.01 1.79 16 38 H 0.15 5.58 8.06 -2.91 -0.02 5.55 16 39 H 0.20 2.67 8.06 -2.91 -0.02 2.65 16 40 H 0.18 2.73 6.73 -2.91 -0.02 2.71 16 41 H 0.06 2.54 5.69 -2.39 -0.01 2.53 16 42 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -82.90 352.44 0.13 -82.77 By element: Atomic # 1 Polarization: 28.88 SS G_CDS: -0.18 Total: 28.70 kcal Atomic # 6 Polarization: 15.55 SS G_CDS: 5.47 Total: 21.02 kcal Atomic # 7 Polarization: -129.39 SS G_CDS: -5.54 Total: -134.93 kcal Atomic # 8 Polarization: -49.43 SS G_CDS: -1.57 Total: -51.00 kcal Atomic # 14 Polarization: 51.83 SS G_CDS: 2.03 Total: 53.86 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -0.08 Total: -0.42 kcal Total: -82.90 0.13 -82.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733823912.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.545 kcal (2) G-P(sol) polarization free energy of solvation -82.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds