Wall clock time and date at job start Tue Mar 31 2020 22:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30212 * 126.79007 * 2 1 4 4 O 1.20917 * 111.64527 * 180.28789 * 3 2 1 5 5 C 1.34066 * 111.55140 * 359.70688 * 4 3 2 6 6 Cl 1.73602 * 126.79448 * 180.02562 * 5 4 3 7 7 C 1.35671 * 106.40902 * 359.97438 * 5 4 3 8 8 C 1.50697 * 128.01604 * 179.97438 * 7 5 4 9 9 C 1.50701 * 109.47050 * 90.02404 * 8 7 5 10 10 O 1.21288 * 119.99927 * 359.73216 * 9 8 7 11 11 N 1.34774 * 120.00282 * 179.97438 * 9 8 7 12 12 C 1.46503 * 120.00183 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.47025 * 180.02562 * 12 11 9 14 14 H 1.08996 * 115.51820 * 330.42233 * 13 12 11 15 15 C 1.52996 * 117.44328 * 185.00129 * 13 12 11 16 16 H 1.08999 * 119.53940 * 4.12295 * 15 13 12 17 17 C 1.54391 * 118.12203 * 160.81250 * 15 13 12 18 18 N 1.48139 * 104.61687 * 87.19554 * 17 15 13 19 19 C 1.36943 * 127.83938 * 140.39768 * 18 17 15 20 20 H 1.07999 * 119.99537 * 195.59046 * 19 18 17 21 21 C 1.38809 * 119.99815 * 15.58791 * 19 18 17 22 22 N 1.31614 * 120.00401 * 9.10080 * 21 19 18 23 23 Si 1.86803 * 119.99665 * 189.09742 * 21 19 18 24 24 H 1.48500 * 109.47021 * 60.00433 * 23 21 19 25 25 H 1.48493 * 109.46914 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47405 * 300.00247 * 23 21 19 27 27 C 1.48148 * 104.32437 * 320.41214 * 18 17 15 28 28 C 1.52999 * 117.44072 * 115.76364 * 13 12 11 29 29 H 1.09004 * 119.54222 * 355.87884 * 28 13 12 30 30 H 1.09005 * 109.47303 * 270.19889 * 1 2 3 31 31 H 1.09008 * 109.47251 * 30.19521 * 1 2 3 32 32 H 1.08997 * 109.47020 * 150.19348 * 1 2 3 33 33 H 1.08998 * 109.47072 * 330.02955 * 8 7 5 34 34 H 1.08996 * 109.47113 * 210.02226 * 8 7 5 35 35 H 0.97004 * 120.00001 * 0.02562 * 11 9 8 36 36 H 1.08989 * 109.47302 * 300.00400 * 12 11 9 37 37 H 1.08998 * 109.46730 * 60.00604 * 12 11 9 38 38 H 1.09002 * 110.40686 * 205.97771 * 17 15 13 39 39 H 1.08998 * 110.41111 * 328.40371 * 17 15 13 40 40 H 0.96999 * 120.00394 * 179.97438 * 22 21 19 41 41 H 1.09004 * 110.40781 * 280.80522 * 27 18 17 42 42 H 1.08998 * 110.50599 * 158.42446 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0428 0.0000 4 8 3.4540 0.7269 -0.0056 5 6 3.6036 -0.6054 -0.0039 6 17 5.1011 -1.4836 -0.0096 7 6 2.3531 -1.1315 0.0044 8 6 1.9580 -2.5857 0.0091 9 6 1.8342 -3.0681 1.4314 10 8 2.0507 -2.3072 2.3508 11 7 1.4877 -4.3462 1.6818 12 6 1.3679 -4.8153 3.0646 13 6 0.9667 -6.2917 3.0693 14 1 0.3699 -6.6188 2.2179 15 6 0.6756 -6.9390 4.4247 16 1 0.6939 -6.3278 5.3271 17 6 -0.1462 -8.2458 4.4457 18 7 0.8579 -9.3217 4.2766 19 6 0.8975 -10.5396 4.9014 20 1 1.8040 -11.1265 4.8834 21 6 -0.2274 -11.0198 5.5578 22 7 -1.3795 -10.3963 5.4312 23 14 -0.1059 -12.5511 6.6207 24 1 0.8746 -12.3198 7.7117 25 1 -1.4362 -12.8531 7.2074 26 1 0.3405 -13.6972 5.7887 27 6 1.8099 -8.7810 3.2784 28 6 1.9653 -7.2919 3.6551 29 1 2.9445 -6.9437 3.9841 30 1 -0.3634 0.0036 1.0277 31 1 -0.3634 0.8883 -0.5169 32 1 -0.3633 -0.8917 -0.5108 33 1 2.7187 -3.1706 -0.5079 34 1 1.0010 -2.7039 -0.4992 35 1 1.3183 -4.9558 0.9465 36 1 2.3251 -4.6976 3.5724 37 1 0.6077 -4.2302 3.5821 38 1 -0.6629 -8.3546 5.3992 39 1 -0.8600 -8.2592 3.6220 40 1 -2.1657 -10.7320 5.8895 41 1 1.4016 -8.8779 2.2724 42 1 2.7694 -9.2932 3.3493 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755430414.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:43 Heat of formation + Delta-G solvation = 80.226283 kcal Electronic energy + Delta-G solvation = -25952.629827 eV Core-core repulsion = 21964.074985 eV Total energy + Delta-G solvation = -3988.554843 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -45.41019 -39.95277 -38.79192 -37.59826 -35.79768 -34.99329 -33.40930 -32.79880 -30.96379 -29.63526 -29.01770 -27.21555 -27.02143 -24.85600 -22.63759 -21.86125 -21.19264 -20.79433 -19.81572 -19.29610 -18.26537 -18.11763 -17.14733 -16.81887 -16.32801 -16.01540 -15.26463 -14.84064 -14.38362 -14.38181 -13.84863 -13.73684 -13.62118 -13.51911 -13.25205 -13.08082 -12.88388 -12.78955 -12.71393 -12.44017 -12.19895 -11.88372 -11.29758 -11.28358 -11.14752 -10.84546 -10.69937 -10.46479 -10.34881 -10.19313 -10.11972 -9.77615 -9.59515 -9.46517 -9.17409 -9.01251 -8.67170 -6.90603 -5.83225 -3.17671 0.67150 0.85540 1.66629 2.43344 2.99610 3.24203 3.36435 3.41293 3.42290 3.63568 4.07781 4.11417 4.38073 4.40697 4.43644 4.68110 4.85642 4.94403 5.08009 5.12639 5.21545 5.24745 5.28308 5.34673 5.40902 5.46081 5.66779 5.74915 5.83696 5.86838 5.92554 6.18423 6.26931 6.51124 6.61654 6.66077 6.87331 7.30801 7.34268 7.49138 7.68051 7.69946 8.03853 8.17553 9.07577 9.70416 10.47125 11.31045 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.027922 B = 0.001882 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.537334 B =14873.613460 C =15544.843682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.045 3.955 3 N -0.348 5.348 4 O 0.110 5.890 5 C 0.014 3.986 6 Cl 0.050 6.950 7 C -0.151 4.151 8 C -0.068 4.068 9 C 0.513 3.487 10 O -0.533 6.533 11 N -0.722 5.722 12 C 0.155 3.845 13 C -0.150 4.150 14 H 0.103 0.897 15 C -0.161 4.161 16 H 0.103 0.897 17 C 0.184 3.816 18 N -0.594 5.594 19 C -0.228 4.228 20 H 0.076 0.924 21 C -0.005 4.005 22 N -0.916 5.916 23 Si 0.913 3.087 24 H -0.284 1.284 25 H -0.289 1.289 26 H -0.283 1.283 27 C 0.154 3.846 28 C -0.171 4.171 29 H 0.103 0.897 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.112 0.888 34 H 0.115 0.885 35 H 0.403 0.597 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.090 0.910 39 H 0.023 0.977 40 H 0.255 0.745 41 H 0.024 0.976 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.684 19.097 -15.096 25.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.114 4.114 3 N -0.054 5.054 4 O 0.044 5.956 5 C -0.076 4.076 6 Cl 0.078 6.922 7 C -0.156 4.156 8 C -0.109 4.109 9 C 0.298 3.702 10 O -0.410 6.410 11 N -0.374 5.374 12 C 0.032 3.968 13 C -0.169 4.169 14 H 0.121 0.879 15 C -0.182 4.182 16 H 0.121 0.879 17 C 0.058 3.942 18 N -0.318 5.318 19 C -0.357 4.357 20 H 0.094 0.906 21 C -0.202 4.202 22 N -0.562 5.562 23 Si 0.743 3.257 24 H -0.211 1.211 25 H -0.215 1.215 26 H -0.210 1.210 27 C 0.028 3.972 28 C -0.191 4.191 29 H 0.121 0.879 30 H 0.106 0.894 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.130 0.870 34 H 0.133 0.867 35 H 0.237 0.763 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.108 0.892 39 H 0.041 0.959 40 H 0.065 0.935 41 H 0.041 0.959 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.610 20.657 -14.252 25.952 hybrid contribution 0.211 -1.922 0.263 1.952 sum 6.821 18.735 -13.988 24.356 Atomic orbital electron populations 1.20247 0.85144 1.04026 1.04157 1.23260 0.99127 0.87683 1.01345 1.73927 0.88462 1.22849 1.20184 1.84910 1.22162 1.20512 1.68035 1.24503 0.90905 0.85022 1.07184 1.98464 1.28185 1.68894 1.96630 1.20063 0.90105 0.96770 1.08633 1.19984 1.05169 0.89752 0.95962 1.20300 0.77094 0.82095 0.90730 1.90746 1.49117 1.54821 1.46285 1.46000 1.70451 1.11247 1.09656 1.20883 1.01433 0.92708 0.81775 1.22526 1.03725 0.91447 0.99222 0.87876 1.24239 1.00653 1.00389 0.92912 0.87905 1.21063 0.89820 0.81490 1.01812 1.45199 1.27005 1.14486 1.45090 1.18950 0.96378 0.93230 1.27094 0.90631 1.24896 0.94913 0.98861 1.01576 1.69878 0.99091 1.41447 1.45791 0.86189 0.76733 0.82412 0.80360 1.21056 1.21522 1.20969 1.21134 0.94370 0.89279 0.92446 1.23999 0.93951 0.95807 1.05379 0.87947 0.89447 0.90053 0.89708 0.87018 0.86704 0.76251 0.91403 0.91086 0.89184 0.95863 0.93474 0.95863 0.93202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 10.39 36.01 0.37 -0.16 16 2 C 0.04 0.45 7.32 -82.12 -0.60 -0.16 16 3 N -0.35 -4.07 12.07 33.43 0.40 -3.66 16 4 O 0.11 1.24 11.20 17.11 0.19 1.43 16 5 C 0.01 0.14 8.12 29.81 0.24 0.38 16 6 Cl 0.05 0.42 29.23 -51.86 -1.52 -1.10 16 7 C -0.15 -1.44 4.82 -104.38 -0.50 -1.94 16 8 C -0.07 -0.49 6.10 -29.04 -0.18 -0.66 16 9 C 0.51 5.46 7.82 -10.99 -0.09 5.37 16 10 O -0.53 -8.04 16.03 5.55 0.09 -7.95 16 11 N -0.72 -7.01 5.56 -60.29 -0.33 -7.35 16 12 C 0.16 1.91 5.95 -4.04 -0.02 1.89 16 13 C -0.15 -2.12 5.39 -90.62 -0.49 -2.61 16 14 H 0.10 1.42 8.04 -51.93 -0.42 1.00 16 15 C -0.16 -2.92 6.85 -89.22 -0.61 -3.53 16 16 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 17 C 0.18 4.27 5.70 -2.41 -0.01 4.26 16 18 N -0.59 -14.87 3.38 -168.86 -0.57 -15.44 16 19 C -0.23 -6.26 10.35 -15.06 -0.16 -6.42 16 20 H 0.08 2.00 7.85 -52.49 -0.41 1.59 16 21 C -0.01 -0.15 5.40 -17.43 -0.09 -0.24 16 22 N -0.92 -26.38 10.86 55.49 0.60 -25.78 16 23 Si 0.91 21.63 29.56 -169.99 -5.03 16.60 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 27 C 0.15 3.09 7.04 -2.41 -0.02 3.07 16 28 C -0.17 -2.87 6.74 -89.22 -0.60 -3.47 16 29 H 0.10 1.60 8.12 -51.93 -0.42 1.18 16 30 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.47 8.14 -51.92 -0.42 0.05 16 32 H 0.08 0.39 7.65 -51.93 -0.40 -0.01 16 33 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.11 0.48 7.65 -51.93 -0.40 0.09 16 35 H 0.40 2.84 8.40 -40.82 -0.34 2.50 16 36 H 0.07 0.91 7.93 -51.94 -0.41 0.49 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.09 2.36 6.51 -51.93 -0.34 2.03 16 39 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 372.81 15.07 5.62 5.62 Total: -1.00 -33.18 372.81 -8.95 -42.13 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -5.66 Total: -0.30 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: -2.76 Total: -4.21 kcal Atomic # 7 Polarization: -52.33 SS G_CDS: 0.10 Total: -52.23 kcal Atomic # 8 Polarization: -6.80 SS G_CDS: 0.28 Total: -6.52 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Atomic # 17 Polarization: 0.42 SS G_CDS: -1.52 Total: -1.10 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.18 -8.95 -42.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755430414.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.358 kcal (2) G-P(sol) polarization free energy of solvation -33.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds