Wall clock time and date at job start Tue Mar 31 2020 22:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30212 * 126.79007 * 2 1 4 4 O 1.20917 * 111.64527 * 180.28789 * 3 2 1 5 5 C 1.34066 * 111.55140 * 359.70688 * 4 3 2 6 6 Cl 1.73602 * 126.79448 * 180.02562 * 5 4 3 7 7 C 1.35671 * 106.40902 * 359.97438 * 5 4 3 8 8 C 1.50697 * 128.01604 * 179.97438 * 7 5 4 9 9 C 1.50701 * 109.47050 * 90.02404 * 8 7 5 10 10 O 1.21288 * 119.99927 * 359.73216 * 9 8 7 11 11 N 1.34774 * 120.00282 * 179.97438 * 9 8 7 12 12 C 1.46503 * 120.00183 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.47025 * 180.02562 * 12 11 9 14 14 H 1.08996 * 115.51820 * 330.42233 * 13 12 11 15 15 C 1.52996 * 117.44328 * 185.00129 * 13 12 11 16 16 H 1.08999 * 119.53940 * 4.12295 * 15 13 12 17 17 C 1.54391 * 118.12203 * 160.81250 * 15 13 12 18 18 N 1.48139 * 104.61687 * 87.19554 * 17 15 13 19 19 C 1.36943 * 127.83938 * 140.39768 * 18 17 15 20 20 H 1.07999 * 119.99537 * 195.59046 * 19 18 17 21 21 C 1.38809 * 119.99815 * 15.58791 * 19 18 17 22 22 N 1.31614 * 120.00401 * 9.10080 * 21 19 18 23 23 Si 1.86803 * 119.99665 * 189.09742 * 21 19 18 24 24 H 1.48500 * 109.47021 * 60.00433 * 23 21 19 25 25 H 1.48493 * 109.46914 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47405 * 300.00247 * 23 21 19 27 27 C 1.48148 * 104.32437 * 320.41214 * 18 17 15 28 28 C 1.52999 * 117.44072 * 115.76364 * 13 12 11 29 29 H 1.09004 * 119.54222 * 355.87884 * 28 13 12 30 30 H 1.09005 * 109.47303 * 270.19889 * 1 2 3 31 31 H 1.09008 * 109.47251 * 30.19521 * 1 2 3 32 32 H 1.08997 * 109.47020 * 150.19348 * 1 2 3 33 33 H 1.08998 * 109.47072 * 330.02955 * 8 7 5 34 34 H 1.08996 * 109.47113 * 210.02226 * 8 7 5 35 35 H 0.97004 * 120.00001 * 0.02562 * 11 9 8 36 36 H 1.08989 * 109.47302 * 300.00400 * 12 11 9 37 37 H 1.08998 * 109.46730 * 60.00604 * 12 11 9 38 38 H 1.09002 * 110.40686 * 205.97771 * 17 15 13 39 39 H 1.08998 * 110.41111 * 328.40371 * 17 15 13 40 40 H 0.96999 * 120.00394 * 179.97438 * 22 21 19 41 41 H 1.09004 * 110.40781 * 280.80522 * 27 18 17 42 42 H 1.08998 * 110.50599 * 158.42446 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0428 0.0000 4 8 3.4540 0.7269 -0.0056 5 6 3.6036 -0.6054 -0.0039 6 17 5.1011 -1.4836 -0.0096 7 6 2.3531 -1.1315 0.0044 8 6 1.9580 -2.5857 0.0091 9 6 1.8342 -3.0681 1.4314 10 8 2.0507 -2.3072 2.3508 11 7 1.4877 -4.3462 1.6818 12 6 1.3679 -4.8153 3.0646 13 6 0.9667 -6.2917 3.0693 14 1 0.3699 -6.6188 2.2179 15 6 0.6756 -6.9390 4.4247 16 1 0.6939 -6.3278 5.3271 17 6 -0.1462 -8.2458 4.4457 18 7 0.8579 -9.3217 4.2766 19 6 0.8975 -10.5396 4.9014 20 1 1.8040 -11.1265 4.8834 21 6 -0.2274 -11.0198 5.5578 22 7 -1.3795 -10.3963 5.4312 23 14 -0.1059 -12.5511 6.6207 24 1 0.8746 -12.3198 7.7117 25 1 -1.4362 -12.8531 7.2074 26 1 0.3405 -13.6972 5.7887 27 6 1.8099 -8.7810 3.2784 28 6 1.9653 -7.2919 3.6551 29 1 2.9445 -6.9437 3.9841 30 1 -0.3634 0.0036 1.0277 31 1 -0.3634 0.8883 -0.5169 32 1 -0.3633 -0.8917 -0.5108 33 1 2.7187 -3.1706 -0.5079 34 1 1.0010 -2.7039 -0.4992 35 1 1.3183 -4.9558 0.9465 36 1 2.3251 -4.6976 3.5724 37 1 0.6077 -4.2302 3.5821 38 1 -0.6629 -8.3546 5.3992 39 1 -0.8600 -8.2592 3.6220 40 1 -2.1657 -10.7320 5.8895 41 1 1.4016 -8.8779 2.2724 42 1 2.7694 -9.2932 3.3493 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755430414.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:42 Heat of formation + Delta-G solvation = 59.131839 kcal Electronic energy + Delta-G solvation = -25953.544551 eV Core-core repulsion = 21964.074985 eV Total energy + Delta-G solvation = -3989.469567 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -46.14614 -40.93202 -40.16669 -38.28194 -36.59378 -36.15541 -34.96185 -33.53726 -32.69849 -30.46076 -29.66895 -28.87029 -28.41584 -26.42776 -23.51646 -22.75230 -22.54493 -21.85806 -20.99610 -20.79362 -19.04623 -18.85729 -18.81009 -17.93497 -17.24807 -16.80814 -16.71141 -16.06493 -15.90901 -15.44281 -14.97798 -14.74038 -14.59775 -14.42080 -14.30159 -14.17145 -14.07920 -13.65109 -13.46633 -13.34033 -13.16812 -13.08355 -12.92614 -12.78100 -12.67650 -12.32368 -11.96994 -11.95629 -11.93842 -11.75036 -11.27298 -10.99760 -10.86361 -10.67048 -10.55190 -10.27341 -10.00792 -8.89127 -7.91110 -5.26896 -0.03492 0.12912 0.96176 1.46631 1.49739 1.56096 1.64927 2.17903 2.48290 2.51680 2.77141 3.00035 3.27288 3.47272 3.64892 3.72798 3.75884 3.76101 3.87070 4.02533 4.25480 4.31509 4.43606 4.45318 4.57201 4.58348 4.63075 4.68903 4.71666 4.77510 4.80113 4.96704 5.05296 5.16599 5.24835 5.36844 5.45886 5.50488 5.55771 5.68247 6.19569 6.59492 6.96660 7.02394 7.27872 7.69872 8.47831 9.22381 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.027922 B = 0.001882 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.537334 B =14873.613460 C =15544.843682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.040 3.960 3 N -0.376 5.376 4 O 0.092 5.908 5 C 0.004 3.996 6 Cl 0.061 6.939 7 C -0.155 4.155 8 C -0.063 4.063 9 C 0.515 3.485 10 O -0.581 6.581 11 N -0.710 5.710 12 C 0.164 3.836 13 C -0.104 4.104 14 H 0.115 0.885 15 C -0.180 4.180 16 H 0.109 0.891 17 C 0.189 3.811 18 N -0.622 5.622 19 C -0.241 4.241 20 H 0.080 0.920 21 C -0.063 4.063 22 N -0.947 5.947 23 Si 0.978 3.022 24 H -0.279 1.279 25 H -0.294 1.294 26 H -0.274 1.274 27 C 0.149 3.851 28 C -0.162 4.162 29 H 0.121 0.879 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.112 0.888 33 H 0.137 0.863 34 H 0.152 0.848 35 H 0.420 0.580 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.050 0.950 39 H 0.005 0.995 40 H 0.250 0.750 41 H 0.031 0.969 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.373 19.122 -16.686 26.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.118 4.118 3 N -0.086 5.086 4 O 0.029 5.971 5 C -0.086 4.086 6 Cl 0.089 6.911 7 C -0.160 4.160 8 C -0.102 4.102 9 C 0.302 3.698 10 O -0.461 6.461 11 N -0.363 5.363 12 C 0.040 3.960 13 C -0.123 4.123 14 H 0.133 0.867 15 C -0.200 4.200 16 H 0.127 0.873 17 C 0.064 3.936 18 N -0.346 5.346 19 C -0.370 4.370 20 H 0.097 0.903 21 C -0.257 4.257 22 N -0.594 5.594 23 Si 0.806 3.194 24 H -0.205 1.205 25 H -0.220 1.220 26 H -0.200 1.200 27 C 0.024 3.976 28 C -0.181 4.181 29 H 0.139 0.861 30 H 0.101 0.899 31 H 0.107 0.893 32 H 0.131 0.869 33 H 0.155 0.845 34 H 0.170 0.830 35 H 0.257 0.743 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.068 0.932 39 H 0.023 0.977 40 H 0.059 0.941 41 H 0.049 0.951 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.342 20.671 -15.893 27.089 hybrid contribution 0.028 -1.925 0.715 2.053 sum 7.370 18.747 -15.178 25.222 Atomic orbital electron populations 1.20418 0.83134 1.05841 1.04314 1.23856 1.00492 0.87492 1.00003 1.73922 0.88844 1.24062 1.21752 1.84865 1.22263 1.21302 1.68686 1.24816 0.91829 0.84852 1.07146 1.98462 1.27599 1.68437 1.96572 1.20413 0.89649 0.97885 1.08040 1.20127 1.08015 0.88233 0.93839 1.20835 0.75748 0.81565 0.91661 1.90742 1.51245 1.56042 1.48055 1.45823 1.69969 1.11491 1.09026 1.20619 1.01012 0.90964 0.83380 1.22422 1.01007 0.91984 0.96859 0.86719 1.23912 1.00830 0.99501 0.95771 0.87270 1.20791 0.89969 0.83960 0.98908 1.45530 1.28236 1.14413 1.46440 1.19332 0.96480 0.94258 1.26936 0.90271 1.25721 0.94717 1.02028 1.03198 1.70073 0.99538 1.42956 1.46872 0.85162 0.76347 0.79180 0.78694 1.20499 1.21994 1.19950 1.21298 0.93482 0.91216 0.91644 1.23917 0.94493 0.94454 1.05251 0.86104 0.89921 0.89314 0.86932 0.84484 0.82987 0.74273 0.91882 0.91473 0.93161 0.97715 0.94130 0.95103 0.92703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.91 10.39 71.24 0.74 -0.17 16 2 C 0.04 0.75 7.32 43.55 0.32 1.06 16 3 N -0.38 -8.68 12.07 -49.44 -0.60 -9.27 16 4 O 0.09 2.07 11.20 71.40 0.80 2.87 16 5 C 0.00 0.07 8.12 67.22 0.55 0.62 16 6 Cl 0.06 0.94 29.23 -2.72 -0.08 0.86 16 7 C -0.15 -2.62 4.82 -19.71 -0.10 -2.71 16 8 C -0.06 -0.65 6.10 29.10 0.18 -0.47 16 9 C 0.51 9.33 7.82 87.66 0.69 10.02 16 10 O -0.58 -16.46 16.03 -3.06 -0.05 -16.51 16 11 N -0.71 -11.11 5.56 -463.06 -2.57 -13.68 16 12 C 0.16 3.56 5.95 86.38 0.51 4.07 16 13 C -0.10 -2.64 5.39 -10.80 -0.06 -2.70 16 14 H 0.11 2.75 8.04 -2.39 -0.02 2.73 16 15 C -0.18 -6.33 6.85 -9.89 -0.07 -6.39 16 16 H 0.11 3.70 8.14 -2.39 -0.02 3.68 16 17 C 0.19 8.99 5.70 86.54 0.49 9.48 16 18 N -0.62 -31.33 3.38 -688.16 -2.33 -33.66 16 19 C -0.24 -13.35 10.35 84.03 0.87 -12.48 16 20 H 0.08 4.19 7.85 -2.91 -0.02 4.16 16 21 C -0.06 -3.53 5.40 84.86 0.46 -3.08 16 22 N -0.95 -56.19 10.86 21.65 0.24 -55.95 16 23 Si 0.98 44.98 29.56 68.60 2.03 47.01 16 24 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 25 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 26 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 27 C 0.15 5.76 7.04 86.53 0.61 6.37 16 28 C -0.16 -5.03 6.74 -9.89 -0.07 -5.09 16 29 H 0.12 3.38 8.12 -2.39 -0.02 3.36 16 30 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 31 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 32 H 0.11 0.61 7.65 -2.39 -0.02 0.59 16 33 H 0.14 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.15 0.47 7.65 -2.39 -0.02 0.45 16 35 H 0.42 3.92 8.40 -92.71 -0.78 3.14 16 36 H 0.06 1.50 7.93 -2.39 -0.02 1.48 16 37 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.05 2.76 6.51 -2.39 -0.02 2.74 16 39 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 40 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 41 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 42 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -75.06 372.81 2.85 -72.22 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: 0.28 Total: 7.60 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: 5.13 Total: -1.47 kcal Atomic # 7 Polarization: -107.31 SS G_CDS: -5.26 Total: -112.57 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: 0.75 Total: -13.64 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Atomic # 17 Polarization: 0.94 SS G_CDS: -0.08 Total: 0.86 kcal Total: -75.06 2.85 -72.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755430414.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.349 kcal (2) G-P(sol) polarization free energy of solvation -75.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds