Wall clock time and date at job start Wed Apr 1 2020 00:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35996 * 117.00171 * 2 1 4 4 C 1.38232 * 119.97116 * 359.97438 * 3 2 1 5 5 C 1.39705 * 119.94569 * 179.97438 * 4 3 2 6 6 C 1.47611 * 120.05978 * 179.72531 * 5 4 3 7 7 O 1.21587 * 119.99595 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00326 * 180.02562 * 6 5 4 9 9 C 1.46496 * 120.00117 * 179.97438 * 8 6 5 10 10 C 1.50704 * 109.47108 * 179.97438 * 9 8 6 11 11 O 1.21211 * 119.99922 * 0.02562 * 10 9 8 12 12 O 1.34312 * 119.99811 * 180.02562 * 10 9 8 13 13 C 1.34928 * 116.99795 * 180.02562 * 12 10 9 14 14 H 1.08005 * 119.99633 * 359.97438 * 13 12 10 15 15 C 1.38748 * 119.99988 * 179.97438 * 13 12 10 16 16 N 1.31443 * 120.00242 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99943 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46881 * 60.00479 * 17 15 13 19 19 H 1.48500 * 109.47055 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47196 * 300.00413 * 17 15 13 21 21 C 1.39712 * 119.88542 * 0.02562 * 5 4 3 22 22 C 1.38232 * 119.94061 * 0.02812 * 21 5 4 23 23 O 1.35999 * 119.96841 * 179.97438 * 22 21 5 24 24 C 1.42900 * 117.00168 * 359.97438 * 23 22 21 25 25 C 1.39226 * 119.97375 * 180.02562 * 3 2 1 26 26 O 1.35895 * 119.94426 * 0.02562 * 25 3 2 27 27 C 1.42898 * 116.99904 * 89.99959 * 26 25 3 28 28 H 1.08994 * 109.47099 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46968 * 300.00047 * 1 2 3 30 30 H 1.09004 * 109.46668 * 60.00177 * 1 2 3 31 31 H 1.08000 * 120.03040 * 0.02808 * 4 3 2 32 32 H 0.97006 * 119.99996 * 359.97438 * 8 6 5 33 33 H 1.08994 * 109.47500 * 299.99854 * 9 8 6 34 34 H 1.09001 * 109.47138 * 60.00347 * 9 8 6 35 35 H 0.96997 * 120.00236 * 180.02562 * 16 15 13 36 36 H 1.07998 * 120.02825 * 179.97438 * 21 5 4 37 37 H 1.09003 * 109.47582 * 180.02562 * 24 23 22 38 38 H 1.09001 * 109.47149 * 300.00217 * 24 23 22 39 39 H 1.09000 * 109.47223 * 59.99678 * 24 23 22 40 40 H 1.09003 * 109.46743 * 179.97438 * 27 26 25 41 41 H 1.08994 * 109.47058 * 300.00027 * 27 26 25 42 42 H 1.08999 * 109.46936 * 60.00708 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2931 2.3707 -0.0005 5 6 1.9279 3.6151 0.0000 6 6 1.1259 4.8543 -0.0067 7 8 -0.0884 4.7924 -0.0122 8 7 1.7395 6.0543 -0.0067 9 6 0.9435 7.2841 -0.0139 10 6 1.8633 8.4778 -0.0117 11 8 3.0647 8.3172 -0.0052 12 8 1.3517 9.7197 -0.0169 13 6 2.2300 10.7440 -0.0150 14 1 3.2916 10.5450 -0.0092 15 6 1.7695 12.0528 -0.0207 16 7 0.4776 12.2949 -0.0272 17 14 2.9855 13.4708 -0.0174 18 1 3.8456 13.3880 -1.2252 19 1 2.2449 14.7579 -0.0239 20 1 3.8326 13.3937 1.1998 21 6 3.3233 3.6848 0.0005 22 6 4.0721 2.5229 0.0000 23 8 5.4304 2.5900 0.0000 24 6 6.0156 3.8937 0.0000 25 6 3.4369 1.2839 -0.0005 26 8 4.1754 0.1431 -0.0016 27 6 4.5274 -0.4007 -1.2753 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 0.2146 2.3142 -0.0005 32 1 2.7083 6.1036 -0.0019 33 1 0.3192 7.3076 -0.9071 34 1 0.3102 7.3122 0.8729 35 1 0.1556 13.2099 -0.0315 36 1 3.8165 4.6456 0.0005 37 1 7.1019 3.8045 -0.0005 38 1 5.6955 4.4357 -0.8899 39 1 5.6955 4.4356 0.8900 40 1 5.1150 -1.3076 -1.1333 41 1 3.6209 -0.6380 -1.8321 42 1 5.1152 0.3292 -1.8320 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006151430.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:00:46 Heat of formation + Delta-G solvation = -186.433588 kcal Electronic energy + Delta-G solvation = -29021.917261 eV Core-core repulsion = 24548.797262 eV Total energy + Delta-G solvation = -4473.119998 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.129 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -41.21785 -39.80995 -39.30646 -38.93521 -38.00604 -36.28079 -35.68953 -34.18438 -32.29850 -31.02066 -30.01492 -28.43657 -27.97495 -27.37720 -26.68582 -25.16859 -23.49660 -22.20448 -20.90168 -20.35217 -19.27574 -17.96117 -17.84080 -17.50484 -17.01823 -16.84976 -16.53891 -16.08987 -15.78776 -15.64732 -15.53347 -15.26451 -15.05608 -14.80401 -14.61331 -14.52776 -14.44233 -13.74522 -13.38615 -13.31608 -12.86117 -12.47076 -12.42747 -12.23479 -12.11669 -11.87331 -11.79693 -11.70813 -11.51961 -11.26775 -10.92683 -10.56841 -10.55603 -10.23856 -10.10095 -9.96708 -9.32871 -9.11261 -8.70869 -8.57074 -8.52609 -6.53716 -4.23110 0.40764 1.03166 2.46911 2.58663 2.93102 3.00387 3.13004 3.17158 3.31453 3.32752 3.37566 3.65828 3.86016 4.38895 4.44523 4.61472 4.66140 4.78500 4.89538 4.91207 4.95872 4.99561 4.99950 5.02229 5.14847 5.17473 5.24320 5.34261 5.45304 5.50863 5.72555 5.76424 5.80479 5.93191 5.95813 6.16299 6.58037 6.70301 6.91777 7.24966 7.38036 7.49286 7.78866 8.12988 8.47783 8.93648 9.63663 10.63275 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018484 B = 0.002384 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.492015 B =11743.089700 C =13154.806637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.302 6.302 3 C 0.140 3.860 4 C -0.174 4.174 5 C -0.053 4.053 6 C 0.559 3.441 7 O -0.534 6.534 8 N -0.705 5.705 9 C 0.135 3.865 10 C 0.388 3.612 11 O -0.560 6.560 12 O -0.203 6.203 13 C -0.386 4.386 14 H 0.098 0.902 15 C 0.044 3.956 16 N -0.859 5.859 17 Si 0.947 3.053 18 H -0.269 1.269 19 H -0.278 1.278 20 H -0.269 1.269 21 C -0.199 4.199 22 C 0.145 3.855 23 O -0.302 6.302 24 C 0.019 3.981 25 C 0.050 3.950 26 O -0.312 6.312 27 C 0.035 3.965 28 H 0.103 0.897 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.151 0.849 32 H 0.410 0.590 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.273 0.727 36 H 0.144 0.856 37 H 0.105 0.895 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.093 0.907 41 H 0.045 0.955 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.947 -22.530 -1.740 23.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.214 6.214 3 C 0.094 3.906 4 C -0.193 4.193 5 C -0.056 4.056 6 C 0.346 3.654 7 O -0.412 6.412 8 N -0.361 5.361 9 C 0.011 3.989 10 C 0.235 3.765 11 O -0.458 6.458 12 O -0.108 6.108 13 C -0.462 4.462 14 H 0.115 0.885 15 C -0.161 4.161 16 N -0.495 5.495 17 Si 0.771 3.229 18 H -0.194 1.194 19 H -0.203 1.203 20 H -0.194 1.194 21 C -0.219 4.219 22 C 0.098 3.902 23 O -0.214 6.214 24 C -0.075 4.075 25 C 0.004 3.996 26 O -0.228 6.228 27 C -0.059 4.059 28 H 0.122 0.878 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.168 0.832 32 H 0.249 0.751 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.083 0.917 36 H 0.161 0.839 37 H 0.123 0.877 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.111 0.889 41 H 0.064 0.936 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.512 -22.792 -1.594 23.289 hybrid contribution 0.702 1.334 -0.221 1.523 sum 5.214 -21.458 -1.815 22.157 Atomic orbital electron populations 1.23198 0.77696 1.04288 1.02128 1.86149 1.21745 1.25344 1.88209 1.18779 0.90470 0.85058 0.96321 1.21146 1.01260 0.89893 1.07042 1.19468 0.92465 0.93219 1.00478 1.17977 0.87408 0.82991 0.77044 1.90791 1.13328 1.87270 1.49845 1.45667 1.11702 1.04631 1.74061 1.20460 0.92481 0.80650 1.05333 1.22873 0.87969 0.86030 0.79644 1.90523 1.16720 1.86472 1.52114 1.83853 1.39889 1.12492 1.74574 1.21208 0.89612 0.82289 1.53101 0.88458 1.25388 0.97087 0.97776 0.95846 1.69982 1.12673 1.21549 1.45270 0.85693 0.79093 0.78685 0.79403 1.19387 1.20254 1.19380 1.21326 0.93532 0.98062 1.08980 1.18770 0.83394 0.92177 0.95862 1.86149 1.15836 1.31368 1.88061 1.23247 0.99340 0.82665 1.02298 1.17139 0.86402 0.84824 1.11204 1.86102 1.70253 1.37447 1.29032 1.23001 0.99656 0.98563 0.84679 0.87837 0.92024 0.92137 0.83151 0.75091 0.87983 0.87975 0.91739 0.83878 0.87651 0.91982 0.91852 0.88904 0.93597 0.93547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 101.05 0.99 1.15 16 2 O -0.30 -3.32 10.27 -34.47 -0.35 -3.67 16 3 C 0.14 1.71 6.69 -39.22 -0.26 1.45 16 4 C -0.17 -2.14 8.57 -39.04 -0.33 -2.47 16 5 C -0.05 -0.71 5.87 -104.97 -0.62 -1.32 16 6 C 0.56 8.71 7.76 -12.44 -0.10 8.61 16 7 O -0.53 -9.57 16.34 5.29 0.09 -9.49 16 8 N -0.71 -11.23 5.48 -62.51 -0.34 -11.57 16 9 C 0.14 2.44 6.27 -5.19 -0.03 2.41 16 10 C 0.39 8.92 7.97 36.01 0.29 9.20 16 11 O -0.56 -13.48 14.90 -19.05 -0.28 -13.76 16 12 O -0.20 -5.54 9.75 -20.73 -0.20 -5.74 16 13 C -0.39 -10.93 9.64 30.92 0.30 -10.63 16 14 H 0.10 2.73 6.86 -52.48 -0.36 2.37 16 15 C 0.04 1.20 5.49 -17.53 -0.10 1.11 16 16 N -0.86 -24.43 13.67 55.48 0.76 -23.67 16 17 Si 0.95 20.49 29.55 -169.99 -5.02 15.46 16 18 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 19 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 20 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 21 C -0.20 -2.41 8.52 -39.03 -0.33 -2.75 16 22 C 0.14 1.79 6.69 -39.21 -0.26 1.53 16 23 O -0.30 -3.47 10.27 -34.48 -0.35 -3.83 16 24 C 0.02 0.16 9.81 101.05 0.99 1.15 16 25 C 0.05 0.64 5.75 -38.85 -0.22 0.42 16 26 O -0.31 -3.98 9.96 -44.80 -0.45 -4.43 16 27 C 0.04 0.32 11.13 101.05 1.12 1.45 16 28 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.43 7.66 -51.93 -0.40 0.03 16 30 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 31 H 0.15 1.73 5.86 -52.49 -0.31 1.42 16 32 H 0.41 6.20 5.46 -40.82 -0.22 5.97 16 33 H 0.10 1.75 8.14 -51.93 -0.42 1.33 16 34 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 35 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 36 H 0.14 1.56 4.61 -52.49 -0.24 1.32 16 37 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.49 7.66 -51.93 -0.40 0.09 16 39 H 0.06 0.52 7.66 -51.93 -0.40 0.12 16 40 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 370.21 15.07 5.58 5.58 Total: -1.00 -34.50 370.21 -3.96 -38.46 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -4.82 Total: 5.34 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: 1.44 Total: 11.31 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: 0.42 Total: -35.24 kcal Atomic # 8 Polarization: -39.36 SS G_CDS: -1.55 Total: -40.91 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.50 -3.96 -38.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006151430.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.970 kcal (2) G-P(sol) polarization free energy of solvation -34.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds