Wall clock time and date at job start Tue Mar 31 2020 23:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46897 * 109.47313 * 2 1 4 4 C 1.46898 * 111.00371 * 296.65816 * 3 2 1 5 5 C 1.50703 * 109.46817 * 288.57156 * 4 3 2 6 6 H 1.07995 * 119.99811 * 1.02821 * 5 4 3 7 7 C 1.37880 * 120.00176 * 181.02947 * 5 4 3 8 8 N 1.31514 * 120.00171 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99754 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47014 * 89.99805 * 9 7 5 11 11 H 1.48497 * 109.46907 * 209.99995 * 9 7 5 12 12 H 1.48500 * 109.47368 * 330.00018 * 9 7 5 13 13 C 1.46904 * 110.99658 * 60.60716 * 3 2 1 14 14 C 1.50698 * 109.46873 * 66.05015 * 13 3 2 15 15 O 1.21277 * 120.00396 * 359.97438 * 14 13 3 16 16 N 1.34781 * 119.99777 * 179.97438 * 14 13 3 17 17 N 1.40108 * 119.99846 * 179.97438 * 16 14 13 18 18 C 1.34773 * 119.99746 * 180.27877 * 17 16 14 19 19 O 1.21568 * 120.00026 * 359.71733 * 18 17 16 20 20 C 1.47768 * 119.99826 * 179.72558 * 18 17 16 21 21 C 1.39628 * 120.15625 * 359.97438 * 20 18 17 22 22 C 1.37897 * 119.86383 * 179.97438 * 21 20 18 23 23 C 1.38417 * 120.18592 * 0.02820 * 22 21 20 24 24 C 1.38265 * 120.31428 * 359.97167 * 23 22 21 25 25 C 1.38154 * 120.13418 * 359.72349 * 24 23 22 26 26 Cl 1.73597 * 120.09685 * 180.29851 * 25 24 23 27 27 H 1.08999 * 109.46796 * 298.23435 * 1 2 3 28 28 H 1.08994 * 109.47151 * 58.23484 * 1 2 3 29 29 H 1.09001 * 109.47250 * 178.23762 * 1 2 3 30 30 H 1.09001 * 109.46568 * 240.00196 * 2 1 3 31 31 H 1.08996 * 109.47216 * 120.00731 * 2 1 3 32 32 H 1.08998 * 109.47265 * 48.56562 * 4 3 2 33 33 H 1.08998 * 109.47657 * 168.57453 * 4 3 2 34 34 H 0.97005 * 119.99540 * 180.02562 * 8 7 5 35 35 H 1.08995 * 109.47487 * 306.04358 * 13 3 2 36 36 H 1.09003 * 109.47175 * 186.04699 * 13 3 2 37 37 H 0.96998 * 119.99890 * 359.97438 * 16 14 13 38 38 H 0.96998 * 119.99739 * 0.02562 * 17 16 14 39 39 H 1.08003 * 120.06232 * 359.97438 * 21 20 18 40 40 H 1.08005 * 119.90209 * 180.02562 * 22 21 20 41 41 H 1.08001 * 119.84127 * 179.97438 * 23 22 21 42 42 H 1.08003 * 119.93312 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6152 2.0865 -1.2256 5 6 2.4022 1.5510 -2.3939 6 1 3.1182 0.7565 -2.2440 7 6 2.2083 2.0755 -3.6542 8 7 2.8948 1.6079 -4.6739 9 14 0.9705 3.4503 -3.9134 10 1 1.6447 4.7622 -3.7419 11 1 0.4083 3.3581 -5.2848 12 1 -0.1256 3.3234 -2.9196 13 6 1.5606 2.1056 1.1950 14 6 2.1951 1.5010 2.4209 15 8 2.9546 0.5620 2.3102 16 7 1.9185 2.0039 3.6404 17 7 2.5080 1.4414 4.7802 18 6 2.2271 1.9407 6.0001 19 8 1.4662 2.8823 6.1111 20 6 2.8441 1.3436 7.2028 21 6 3.7182 0.2618 7.0791 22 6 4.2910 -0.2904 8.2054 23 6 4.0013 0.2244 9.4572 24 6 3.1368 1.2955 9.5884 25 6 2.5605 1.8628 8.4683 26 17 1.4813 3.2125 8.6335 27 1 -0.3633 0.4862 0.9054 28 1 -0.3633 0.5410 -0.8737 29 1 -0.3634 -1.0272 -0.0316 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 0.5512 1.9274 -1.4009 33 1 1.8097 3.1532 -1.1148 34 1 2.7586 1.9772 -5.5605 35 1 0.4761 2.0284 1.2715 36 1 1.8456 3.1549 1.1183 37 1 1.3114 2.7551 3.7289 38 1 3.1155 0.6904 4.6916 39 1 3.9451 -0.1416 6.1033 40 1 4.9675 -1.1269 8.1104 41 1 4.4527 -0.2126 10.3356 42 1 2.9148 1.6920 10.5681 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081040203.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:28:25 Heat of formation + Delta-G solvation = 12.164068 kcal Electronic energy + Delta-G solvation = -26186.268242 eV Core-core repulsion = 22194.762000 eV Total energy + Delta-G solvation = -3991.506242 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.85568 -39.76761 -38.63569 -36.93101 -36.72138 -35.29935 -32.76933 -32.51848 -31.25322 -30.98049 -29.76826 -28.51063 -25.59816 -24.38719 -23.18553 -22.88453 -21.64374 -21.11814 -19.48069 -18.50363 -17.91451 -17.09239 -16.73275 -16.24204 -15.98741 -15.91953 -15.39287 -15.29239 -14.77184 -14.63413 -14.41533 -14.19771 -14.03914 -13.74100 -13.59976 -13.05205 -12.50647 -12.48316 -12.08155 -12.05386 -11.89898 -11.82333 -11.55302 -11.50131 -11.37984 -11.04587 -10.72060 -10.59277 -10.26597 -10.04212 -9.93295 -9.70524 -9.57042 -9.29633 -9.28904 -8.56945 -8.46610 -7.39501 -6.04656 -4.01728 0.16632 0.60275 1.58591 1.77401 2.28040 2.70857 3.21531 3.27010 3.34459 3.35037 3.67518 4.10827 4.17996 4.35219 4.40604 4.65850 4.67665 4.75890 4.87218 4.96648 5.15764 5.26467 5.45377 5.47217 5.52621 5.57703 5.72938 5.75412 5.89068 6.00294 6.07859 6.30822 6.41835 6.48009 6.55311 6.79287 6.90000 7.03030 7.35059 7.56495 7.69735 7.83248 7.95688 8.32052 8.64415 9.06579 9.56107 11.08557 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.023389 B = 0.002126 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.848861 B =13164.990835 C =13808.333093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.052 3.948 3 N -0.505 5.505 4 C 0.158 3.842 5 C -0.505 4.505 6 H 0.082 0.918 7 C 0.068 3.932 8 N -0.899 5.899 9 Si 0.873 3.127 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.268 1.268 13 C 0.040 3.960 14 C 0.518 3.482 15 O -0.514 6.514 16 N -0.530 5.530 17 N -0.515 5.515 18 C 0.552 3.448 19 O -0.517 6.517 20 C -0.122 4.122 21 C -0.073 4.073 22 C -0.121 4.121 23 C -0.080 4.080 24 C -0.121 4.121 25 C 0.017 3.983 26 Cl -0.028 7.028 27 H 0.041 0.959 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.000 1.000 33 H 0.023 0.977 34 H 0.263 0.737 35 H 0.065 0.935 36 H 0.104 0.896 37 H 0.430 0.570 38 H 0.429 0.571 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.090 -1.932 30.693 30.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.076 4.076 3 N -0.229 5.229 4 C 0.033 3.967 5 C -0.543 4.543 6 H 0.100 0.900 7 C -0.134 4.134 8 N -0.538 5.538 9 Si 0.700 3.300 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.193 1.193 13 C -0.093 4.093 14 C 0.305 3.695 15 O -0.386 6.386 16 N -0.282 5.282 17 N -0.263 5.263 18 C 0.339 3.661 19 O -0.392 6.392 20 C -0.127 4.127 21 C -0.092 4.092 22 C -0.140 4.140 23 C -0.098 4.098 24 C -0.140 4.140 25 C -0.011 4.011 26 Cl 0.001 6.999 27 H 0.060 0.940 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.106 0.894 31 H 0.094 0.906 32 H 0.018 0.982 33 H 0.041 0.959 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.122 0.878 37 H 0.272 0.728 38 H 0.272 0.728 39 H 0.155 0.845 40 H 0.157 0.843 41 H 0.156 0.844 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -0.634 -1.804 30.448 30.508 hybrid contribution -1.551 0.906 -0.280 1.818 sum -2.186 -0.898 30.168 30.260 Atomic orbital electron populations 1.22450 0.99810 1.01611 1.01220 1.22210 0.91331 0.90524 1.03578 1.61939 1.58860 1.02005 1.00081 1.20309 0.95042 0.93883 0.87489 1.20979 1.22659 1.20907 0.89769 0.89997 1.24889 0.95836 0.96670 0.95961 1.69892 1.41326 1.42685 0.99932 0.86900 0.82245 0.83145 0.77661 1.20161 1.21219 1.19290 1.21934 0.98134 0.99843 0.89384 1.21362 0.81980 0.83779 0.82355 1.90678 1.35159 1.27537 1.85241 1.45195 1.48788 1.36587 0.97630 1.44648 1.47502 1.35639 0.98528 1.18108 0.82457 0.83906 0.81650 1.90901 1.35583 1.27151 1.85555 1.19468 1.02060 0.99266 0.91924 1.21403 0.94137 0.93645 1.00057 1.21251 1.00155 1.00556 0.91995 1.21392 0.95591 0.94595 0.98228 1.21123 0.97926 0.97115 0.97828 1.21033 0.94903 0.91998 0.93215 1.98435 1.61657 1.42062 1.97721 0.94013 0.91676 0.92782 0.89416 0.90631 0.98240 0.95886 0.92663 0.91718 0.87771 0.72766 0.72770 0.84464 0.84343 0.84372 0.84070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.20 9.26 37.16 0.34 -2.85 16 2 C 0.05 1.00 5.58 -3.82 -0.02 0.97 16 3 N -0.51 -10.33 4.40 -237.52 -1.04 -11.38 16 4 C 0.16 3.67 3.66 -4.98 -0.02 3.66 16 5 C -0.50 -14.14 9.11 -34.44 -0.31 -14.45 16 6 H 0.08 2.54 7.70 -52.49 -0.40 2.14 16 7 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 8 N -0.90 -27.39 13.96 55.43 0.77 -26.61 16 9 Si 0.87 21.01 27.45 -169.99 -4.67 16.34 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.27 -6.12 6.57 56.52 0.37 -5.74 16 13 C 0.04 0.63 5.21 -4.97 -0.03 0.60 16 14 C 0.52 7.78 7.67 -10.98 -0.08 7.70 16 15 O -0.51 -9.25 14.15 5.56 0.08 -9.17 16 16 N -0.53 -6.52 6.26 31.22 0.20 -6.32 16 17 N -0.52 -5.81 6.21 30.51 0.19 -5.62 16 18 C 0.55 6.36 7.88 -12.37 -0.10 6.26 16 19 O -0.52 -7.15 13.81 5.31 0.07 -7.08 16 20 C -0.12 -1.13 5.88 -104.94 -0.62 -1.75 16 21 C -0.07 -0.50 9.54 -39.19 -0.37 -0.87 16 22 C -0.12 -0.61 10.03 -39.64 -0.40 -1.01 16 23 C -0.08 -0.37 10.04 -39.51 -0.40 -0.77 16 24 C -0.12 -0.75 9.82 -39.60 -0.39 -1.14 16 25 C 0.02 0.15 6.35 -39.07 -0.25 -0.10 16 26 Cl -0.03 -0.30 26.02 -51.86 -1.35 -1.65 16 27 H 0.04 0.61 6.38 -51.93 -0.33 0.28 16 28 H 0.06 1.19 6.18 -51.93 -0.32 0.87 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.09 1.91 7.15 -51.93 -0.37 1.54 16 31 H 0.08 1.42 5.87 -51.93 -0.30 1.12 16 32 H 0.00 0.00 5.01 -51.93 -0.26 -0.26 16 33 H 0.02 0.53 7.19 -51.93 -0.37 0.15 16 34 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 35 H 0.07 0.89 6.05 -51.93 -0.31 0.58 16 36 H 0.10 1.47 7.87 -51.93 -0.41 1.06 16 37 H 0.43 4.69 8.00 -182.59 -1.46 3.23 16 38 H 0.43 4.34 6.03 -182.59 -1.10 3.23 16 39 H 0.14 0.73 6.41 -52.48 -0.34 0.39 16 40 H 0.14 0.37 8.06 -52.48 -0.42 -0.05 16 41 H 0.14 0.26 8.06 -52.49 -0.42 -0.16 16 42 H 0.14 0.61 8.06 -52.48 -0.42 0.18 16 LS Contribution 359.00 15.07 5.41 5.41 Total: -1.00 -34.56 359.00 -9.92 -44.48 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -6.84 Total: 3.50 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -2.74 Total: -1.90 kcal Atomic # 7 Polarization: -50.05 SS G_CDS: 0.11 Total: -49.93 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: 0.15 Total: -16.25 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.67 Total: 16.34 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -1.35 Total: -1.65 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.56 -9.92 -44.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081040203.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.641 kcal (2) G-P(sol) polarization free energy of solvation -34.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds