Wall clock time and date at job start Tue Mar 31 2020 23:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47008 * 2 1 4 4 C 1.50694 * 109.46997 * 120.00129 * 2 1 3 5 5 H 1.08003 * 119.99897 * 120.00078 * 4 2 1 6 6 C 1.37870 * 120.00558 * 299.99992 * 4 2 1 7 7 N 1.31519 * 120.00039 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00590 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47098 * 89.99601 * 8 6 4 10 10 H 1.48497 * 109.47365 * 210.00368 * 8 6 4 11 11 H 1.48507 * 109.46797 * 329.99752 * 8 6 4 12 12 O 1.45201 * 109.47120 * 240.00664 * 2 1 3 13 13 C 1.34224 * 117.00270 * 89.99705 * 12 2 1 14 14 O 1.20823 * 119.99936 * 0.02562 * 13 12 2 15 15 C 1.50695 * 119.99978 * 180.02562 * 13 12 2 16 16 H 1.09006 * 110.88734 * 62.35858 * 15 13 12 17 17 C 1.54631 * 110.97135 * 298.54874 * 15 13 12 18 18 C 1.51281 * 104.31067 * 217.15071 * 17 15 13 19 19 O 1.21298 * 124.93669 * 196.22147 * 18 17 15 20 20 N 1.34413 * 110.11904 * 16.18238 * 18 17 15 21 21 C 1.40152 * 124.34947 * 180.42825 * 20 18 17 22 22 C 1.38788 * 120.05076 * 89.75044 * 21 20 18 23 23 C 1.38146 * 119.97607 * 179.74813 * 22 21 20 24 24 C 1.38483 * 120.08242 * 0.54859 * 23 22 21 25 25 F 1.35102 * 119.94228 * 179.72560 * 24 23 22 26 26 C 1.38456 * 120.10870 * 359.70338 * 24 23 22 27 27 C 1.38302 * 120.02060 * 0.02562 * 26 24 23 28 28 F 1.35095 * 120.04006 * 179.97438 * 27 26 24 29 29 C 1.46766 * 111.30127 * 0.41169 * 20 18 17 30 30 H 1.09001 * 109.47221 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47154 * 299.99826 * 1 2 3 32 32 H 1.09005 * 109.47360 * 59.99346 * 1 2 3 33 33 H 0.97002 * 120.00488 * 180.02562 * 7 6 4 34 34 H 1.09002 * 110.48855 * 98.40332 * 17 15 13 35 35 H 1.08998 * 110.48570 * 335.89393 * 17 15 13 36 36 H 1.07999 * 120.01368 * 0.02562 * 22 21 20 37 37 H 1.07992 * 119.95911 * 180.25381 * 23 22 21 38 38 H 1.08001 * 119.98473 * 180.02562 * 26 24 23 39 39 H 1.09000 * 110.24710 * 101.98191 * 29 20 18 40 40 H 1.08998 * 110.24340 * 223.89623 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9427 0.8295 2.6035 8 14 2.3225 -1.1197 4.0079 9 1 3.6305 -0.5443 4.4118 10 1 1.3444 -0.9493 5.1122 11 1 2.4879 -2.5656 3.7121 12 8 2.0140 -0.6843 -1.1856 13 6 2.2171 0.0642 -2.2811 14 8 1.9981 1.2520 -2.2503 15 6 2.7182 -0.5769 -3.5495 16 1 2.0048 -1.3127 -3.9212 17 6 4.1100 -1.2153 -3.3345 18 6 4.8451 -0.9550 -4.6309 19 8 5.8567 -1.5247 -4.9823 20 7 4.2137 -0.0013 -5.3369 21 6 4.6353 0.4649 -6.5895 22 6 4.1800 -0.1479 -7.7485 23 6 4.5925 0.3162 -8.9826 24 6 5.4689 1.3854 -9.0646 25 9 5.8747 1.8335 -10.2728 26 6 5.9293 1.9961 -7.9104 27 6 5.5149 1.5385 -6.6729 28 9 5.9643 2.1338 -5.5465 29 6 3.0258 0.4887 -4.6278 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 0.7087 1.1611 3.4845 34 1 4.0153 -2.2868 -3.1581 35 1 4.6247 -0.7366 -2.5014 36 1 3.5000 -0.9846 -7.6859 37 1 4.2349 -0.1583 -9.8843 38 1 6.6124 2.8300 -7.9767 39 1 3.2369 1.4489 -4.1570 40 1 2.1872 0.5836 -5.3175 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113693409.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:34 Heat of formation + Delta-G solvation = -193.251334 kcal Electronic energy + Delta-G solvation = -28789.111510 eV Core-core repulsion = 24204.608356 eV Total energy + Delta-G solvation = -4584.503154 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.21499 -50.10087 -42.29076 -41.07018 -39.60205 -38.01407 -37.24462 -35.34063 -34.31479 -32.05029 -31.66133 -30.05689 -28.94555 -27.43312 -25.72197 -24.42227 -24.00705 -22.98718 -21.35558 -21.01070 -19.41108 -19.13657 -18.77095 -18.56495 -18.27254 -17.74707 -17.21967 -16.93579 -16.89308 -16.52972 -16.47431 -16.29396 -15.94758 -15.75388 -15.47562 -15.04247 -14.94242 -14.62737 -14.50655 -14.11184 -13.99515 -13.82068 -13.53414 -13.16537 -13.09784 -12.99940 -12.83605 -12.71056 -12.64714 -12.49987 -12.34830 -12.14831 -11.57788 -11.54935 -11.16455 -10.96442 -10.58293 -10.25144 -10.23649 -9.83095 -8.27549 -6.43474 -0.36125 -0.14714 1.21334 1.25640 1.42317 1.44578 1.48220 1.56853 1.94437 2.14398 2.41124 2.68566 3.02322 3.03798 3.19428 3.30786 3.48729 3.63688 3.76905 3.79784 4.00425 4.10130 4.18302 4.40942 4.51645 4.57792 4.60757 4.71980 4.75398 4.78530 4.82252 4.87443 4.87682 4.97356 5.19192 5.26362 5.51456 5.60320 5.66773 5.71344 5.94548 6.09400 6.61131 6.84131 6.93013 7.28142 8.79742 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.025366 B = 0.002324 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.589494 B =12044.732325 C =12199.718727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.218 3.782 3 H 0.009 0.991 4 C -0.545 4.545 5 H 0.070 0.930 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.978 3.022 9 H -0.275 1.275 10 H -0.277 1.277 11 H -0.261 1.261 12 O -0.353 6.353 13 C 0.461 3.539 14 O -0.544 6.544 15 C -0.078 4.078 16 H 0.172 0.828 17 C -0.134 4.134 18 C 0.529 3.471 19 O -0.552 6.552 20 N -0.574 5.574 21 C 0.079 3.921 22 C -0.043 4.043 23 C -0.139 4.139 24 C 0.134 3.866 25 F -0.129 7.129 26 C -0.187 4.187 27 C 0.112 3.888 28 F -0.141 7.141 29 C 0.121 3.879 30 H 0.048 0.952 31 H 0.078 0.922 32 H 0.028 0.972 33 H 0.270 0.730 34 H 0.144 0.856 35 H 0.102 0.898 36 H 0.175 0.825 37 H 0.183 0.817 38 H 0.164 0.836 39 H 0.073 0.927 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.903 -2.512 -24.017 24.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.165 3.835 3 H 0.026 0.974 4 C -0.583 4.583 5 H 0.088 0.912 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.802 3.198 9 H -0.201 1.201 10 H -0.202 1.202 11 H -0.185 1.185 12 O -0.269 6.269 13 C 0.305 3.695 14 O -0.435 6.435 15 C -0.097 4.097 16 H 0.190 0.810 17 C -0.174 4.174 18 C 0.319 3.681 19 O -0.429 6.429 20 N -0.304 5.304 21 C -0.011 4.011 22 C -0.062 4.062 23 C -0.158 4.158 24 C 0.114 3.886 25 F -0.107 7.107 26 C -0.207 4.207 27 C 0.091 3.909 28 F -0.119 7.119 29 C 0.000 4.000 30 H 0.067 0.933 31 H 0.096 0.904 32 H 0.047 0.953 33 H 0.079 0.921 34 H 0.162 0.838 35 H 0.120 0.880 36 H 0.192 0.808 37 H 0.200 0.800 38 H 0.182 0.818 39 H 0.091 0.909 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.315 -2.287 -24.041 24.532 hybrid contribution 0.496 0.705 1.311 1.569 sum 4.811 -1.582 -22.731 23.288 Atomic orbital electron populations 1.21986 0.96529 1.00597 1.00982 1.20352 0.92138 0.92024 0.79006 0.97366 1.21310 1.33197 1.13892 0.89904 0.91215 1.25776 0.94795 0.95687 1.02081 1.70011 1.36622 1.23692 1.25131 0.85245 0.77995 0.79094 0.77482 1.20082 1.20246 1.18545 1.86466 1.75823 1.43430 1.21193 1.23672 0.74002 0.85491 0.86350 1.90628 1.49737 1.18185 1.84946 1.21929 0.99194 0.99323 0.89276 0.81049 1.22291 0.93344 1.06429 0.95357 1.21200 0.83249 0.77829 0.85801 1.90729 1.25218 1.52877 1.74048 1.45577 1.28582 1.38984 1.17297 1.17746 1.00530 0.96681 0.86188 1.21380 0.97535 0.98451 0.88839 1.21462 0.98002 0.96201 1.00120 1.17446 0.96425 0.95019 0.79682 1.91558 1.88935 1.88407 1.41814 1.21094 1.05390 1.04678 0.89505 1.17954 0.96616 0.93763 0.82539 1.91518 1.87574 1.82594 1.50222 1.22237 0.87601 0.96424 0.93751 0.93314 0.90372 0.95267 0.92089 0.83846 0.87962 0.80759 0.79980 0.81827 0.90890 0.85333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.91 9.33 71.98 0.67 -6.23 16 2 C 0.22 11.24 2.56 29.85 0.08 11.32 16 3 H 0.01 0.50 7.16 -2.39 -0.02 0.48 16 4 C -0.55 -29.61 8.90 25.60 0.23 -29.38 16 5 H 0.07 3.69 7.81 -2.91 -0.02 3.66 16 6 C 0.02 0.88 5.30 84.65 0.45 1.33 16 7 N -0.92 -51.32 11.32 21.45 0.24 -51.08 16 8 Si 0.98 41.90 29.54 68.60 2.03 43.93 16 9 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 10 H -0.28 -11.50 7.11 99.48 0.71 -10.80 16 11 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 12 O -0.35 -15.09 9.85 -51.36 -0.51 -15.60 16 13 C 0.46 16.44 7.15 71.23 0.51 16.95 16 14 O -0.54 -23.04 14.80 21.97 0.33 -22.72 16 15 C -0.08 -1.74 3.66 -10.41 -0.04 -1.78 16 16 H 0.17 2.44 8.14 -2.38 -0.02 2.42 16 17 C -0.13 -3.14 6.39 30.59 0.20 -2.95 16 18 C 0.53 13.94 7.99 87.90 0.70 14.65 16 19 O -0.55 -18.38 17.71 -3.09 -0.05 -18.44 16 20 N -0.57 -12.80 2.78 -627.00 -1.74 -14.55 16 21 C 0.08 1.61 5.39 38.13 0.21 1.82 16 22 C -0.04 -0.56 9.96 22.38 0.22 -0.34 16 23 C -0.14 -1.45 10.02 22.31 0.22 -1.23 16 24 C 0.13 1.90 7.30 22.38 0.16 2.07 16 25 F -0.13 -1.89 17.26 44.97 0.78 -1.12 16 26 C -0.19 -3.20 10.00 22.34 0.22 -2.98 16 27 C 0.11 2.50 7.31 22.48 0.16 2.66 16 28 F -0.14 -3.89 17.08 44.97 0.77 -3.12 16 29 C 0.12 2.50 6.62 86.90 0.57 3.08 16 30 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.08 4.13 6.07 -2.39 -0.01 4.12 16 32 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 33 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 34 H 0.14 2.74 8.14 -2.39 -0.02 2.72 16 35 H 0.10 2.77 7.89 -2.39 -0.02 2.75 16 36 H 0.18 1.34 8.06 -2.91 -0.02 1.32 16 37 H 0.18 0.71 8.06 -2.91 -0.02 0.69 16 38 H 0.16 2.32 8.06 -2.91 -0.02 2.29 16 39 H 0.07 1.92 7.07 -2.39 -0.02 1.91 16 40 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -71.94 358.71 7.50 -64.44 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: 1.09 Total: 9.27 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: 4.57 Total: 8.98 kcal Atomic # 7 Polarization: -64.13 SS G_CDS: -1.50 Total: -65.63 kcal Atomic # 8 Polarization: -56.51 SS G_CDS: -0.24 Total: -56.75 kcal Atomic # 9 Polarization: -5.78 SS G_CDS: 1.54 Total: -4.24 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Total: -71.94 7.50 -64.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113693409.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.813 kcal (2) G-P(sol) polarization free energy of solvation -71.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds