Wall clock time and date at job start Tue Mar 31 2020 23:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47154 * 2 1 4 4 C 1.50699 * 109.46986 * 239.99806 * 2 1 3 5 5 H 1.08002 * 120.00001 * 274.93893 * 4 2 1 6 6 C 1.37879 * 119.99816 * 94.93661 * 4 2 1 7 7 N 1.31518 * 119.99887 * 184.88623 * 6 4 2 8 8 Si 1.86804 * 120.00142 * 4.88089 * 6 4 2 9 9 H 1.48498 * 109.46714 * 94.86648 * 8 6 4 10 10 H 1.48499 * 109.47281 * 214.86897 * 8 6 4 11 11 H 1.48498 * 109.46739 * 334.86998 * 8 6 4 12 12 N 1.46496 * 109.46569 * 120.00247 * 2 1 3 13 13 C 1.34776 * 120.00097 * 274.99223 * 12 2 1 14 14 O 1.21566 * 119.99931 * 0.02562 * 13 12 2 15 15 C 1.47779 * 120.00222 * 180.02562 * 13 12 2 16 16 C 1.39547 * 120.12559 * 359.72440 * 15 13 12 17 17 C 1.38532 * 119.79489 * 179.76793 * 16 15 13 18 18 N 1.40031 * 119.98171 * 180.27494 * 17 16 15 19 19 C 1.34774 * 119.99714 * 35.33858 * 18 17 16 20 20 O 1.21593 * 120.00262 * 355.37604 * 19 18 17 21 21 N 1.34780 * 119.99908 * 175.37215 * 19 18 17 22 22 C 1.46505 * 119.99973 * 180.02562 * 21 19 18 23 23 C 1.46501 * 119.99781 * 0.02562 * 21 19 18 24 24 C 1.39008 * 120.03991 * 0.50967 * 17 16 15 25 25 C 1.38166 * 120.24714 * 359.74832 * 24 17 16 26 26 C 1.38180 * 120.20856 * 359.97438 * 25 24 17 27 27 Cl 1.73594 * 120.02286 * 179.97438 * 26 25 24 28 28 H 1.08996 * 109.47473 * 175.01376 * 1 2 3 29 29 H 1.09004 * 109.46893 * 55.01154 * 1 2 3 30 30 H 1.09001 * 109.47166 * 295.01426 * 1 2 3 31 31 H 0.96999 * 119.99958 * 179.97438 * 7 6 4 32 32 H 0.96997 * 120.00028 * 95.00518 * 12 2 1 33 33 H 1.08005 * 120.09751 * 0.02562 * 16 15 13 34 34 H 0.96994 * 120.00194 * 215.34357 * 18 17 16 35 35 H 1.09000 * 109.46757 * 90.00440 * 22 21 19 36 36 H 1.08995 * 109.46773 * 209.99848 * 22 21 19 37 37 H 1.08993 * 109.46648 * 330.00166 * 22 21 19 38 38 H 1.08994 * 109.47099 * 90.00272 * 23 21 19 39 39 H 1.09007 * 109.46691 * 209.99800 * 23 21 19 40 40 H 1.08999 * 109.47113 * 330.00004 * 23 21 19 41 41 H 1.08001 * 119.87794 * 179.71581 * 24 17 16 42 42 H 1.07997 * 119.89735 * 179.97438 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.1364 -1.7854 -1.2286 6 6 2.3590 0.0119 -2.3585 7 7 2.7052 -0.6134 -3.4625 8 14 2.3096 1.8789 -2.3189 9 1 3.6660 2.4035 -2.0183 10 1 1.8623 2.3904 -3.6392 11 1 1.3615 2.3267 -1.2674 12 7 2.0182 -0.6907 1.1961 13 6 2.1470 -0.0184 2.3571 14 8 1.8576 1.1611 2.4118 15 6 2.6400 -0.7149 3.5636 16 6 2.9675 -2.0701 3.5053 17 6 3.4336 -2.7151 4.6392 18 7 3.7688 -4.0736 4.5836 19 6 4.3252 -4.5852 3.4677 20 8 4.4588 -3.8882 2.4804 21 7 4.7334 -5.8695 3.4462 22 6 5.3386 -6.4255 2.2334 23 6 4.5719 -6.7095 4.6356 24 6 3.5641 -2.0158 5.8335 25 6 3.2352 -0.6753 5.8945 26 6 2.7748 -0.0204 4.7683 27 17 2.3624 1.6639 4.8506 28 1 -0.3634 -1.0237 -0.0893 29 1 -0.3633 0.5893 -0.8420 30 1 -0.3633 0.4345 0.9313 31 1 2.9346 -0.1052 -4.2562 32 1 2.2489 -1.6318 1.1526 33 1 2.8618 -2.6134 2.5778 34 1 3.6006 -4.6463 5.3481 35 1 6.4176 -6.2737 2.2634 36 1 5.1233 -7.4924 2.1762 37 1 4.9253 -5.9240 1.3584 38 1 3.6030 -7.2075 4.5998 39 1 5.3642 -7.4576 4.6623 40 1 4.6283 -6.0883 5.5294 41 1 3.9234 -2.5224 6.7171 42 1 3.3384 -0.1376 6.8254 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119686766.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:53 Heat of formation + Delta-G solvation = -18.935394 kcal Electronic energy + Delta-G solvation = -27191.407721 eV Core-core repulsion = 23198.552905 eV Total energy + Delta-G solvation = -3992.854816 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.02202 -39.55547 -38.08970 -36.34311 -35.77697 -34.85286 -34.64417 -32.41533 -31.45782 -29.73287 -29.24021 -28.20700 -26.15342 -25.23047 -24.10165 -22.77285 -21.05466 -20.25181 -19.57067 -18.80230 -17.96346 -16.90700 -16.74277 -16.33918 -15.89608 -15.60913 -15.20765 -14.79483 -14.45959 -14.23195 -14.14382 -13.90641 -13.61852 -13.13739 -13.00283 -12.99001 -12.84562 -12.47323 -12.39367 -12.32905 -12.15149 -11.96908 -11.52727 -11.35589 -11.04570 -10.85341 -10.69486 -10.44848 -10.32052 -10.09706 -9.74611 -9.09417 -9.06540 -9.04533 -8.86124 -8.59788 -8.15645 -7.92228 -6.14034 -4.16755 0.79739 1.12817 2.19605 2.41595 2.79415 3.23830 3.33389 3.41774 3.45193 3.50352 3.98811 4.07322 4.41495 4.52998 4.66491 4.77070 4.83552 4.94057 5.12379 5.15823 5.18488 5.26409 5.34841 5.42021 5.63943 5.71233 5.80472 5.91517 6.10422 6.13950 6.24760 6.45002 6.50195 6.62145 6.72228 6.77112 7.03859 7.29128 7.46530 7.48803 7.65095 8.22168 8.23526 8.67271 8.87726 9.06028 9.48289 10.97861 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.008885 B = 0.004367 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3150.697676 B = 6409.872882 C = 9092.974102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.229 3.771 3 H 0.055 0.945 4 C -0.527 4.527 5 H 0.079 0.921 6 C 0.081 3.919 7 N -0.890 5.890 8 Si 0.871 3.129 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.255 1.255 12 N -0.694 5.694 13 C 0.537 3.463 14 O -0.533 6.533 15 C -0.097 4.097 16 C -0.077 4.077 17 C 0.155 3.845 18 N -0.685 5.685 19 C 0.699 3.301 20 O -0.555 6.555 21 N -0.634 5.634 22 C 0.100 3.900 23 C 0.076 3.924 24 C -0.120 4.120 25 C -0.103 4.103 26 C -0.006 4.006 27 Cl -0.034 7.034 28 H 0.046 0.954 29 H 0.051 0.949 30 H 0.030 0.970 31 H 0.266 0.734 32 H 0.393 0.607 33 H 0.156 0.844 34 H 0.406 0.594 35 H 0.055 0.945 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.059 0.941 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.134 0.866 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.575 -12.885 22.565 26.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.127 3.873 3 H 0.073 0.927 4 C -0.565 4.565 5 H 0.097 0.903 6 C -0.123 4.123 7 N -0.526 5.526 8 Si 0.697 3.303 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.179 1.179 12 N -0.343 5.343 13 C 0.322 3.678 14 O -0.412 6.412 15 C -0.102 4.102 16 C -0.098 4.098 17 C 0.060 3.940 18 N -0.335 5.335 19 C 0.401 3.599 20 O -0.430 6.430 21 N -0.372 5.372 22 C -0.042 4.042 23 C -0.067 4.067 24 C -0.141 4.141 25 C -0.123 4.123 26 C -0.034 4.034 27 Cl -0.005 7.005 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.049 0.951 31 H 0.076 0.924 32 H 0.228 0.772 33 H 0.173 0.827 34 H 0.244 0.756 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.103 0.897 38 H 0.077 0.923 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.152 0.848 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.521 -11.440 21.578 24.675 hybrid contribution 0.188 0.042 0.361 0.410 sum 3.710 -11.398 21.939 25.000 Atomic orbital electron populations 1.22204 0.98575 1.00478 0.99242 1.19244 0.90920 0.94652 0.82522 0.92711 1.21022 1.44919 0.95676 0.94847 0.90339 1.24929 0.93640 0.98561 0.95152 1.69895 1.45047 1.36045 1.01661 0.86919 0.79557 0.86073 0.77731 1.20032 1.21112 1.17935 1.46628 1.64117 1.13983 1.09536 1.18091 0.79482 0.86980 0.83278 1.90805 1.50770 1.14843 1.84778 1.20075 1.02099 0.93629 0.94410 1.21553 0.95530 0.93274 0.99460 1.17363 0.98850 0.83050 0.94726 1.42658 1.64843 1.08481 1.17473 1.15901 0.78569 0.82106 0.83358 1.91048 1.60622 1.58228 1.33096 1.46909 1.65139 1.09823 1.15325 1.21612 0.97727 0.98368 0.86542 1.21784 1.02463 0.95448 0.87021 1.20857 1.02297 0.93736 0.97223 1.20755 1.00112 0.93855 0.97551 1.21010 1.01042 0.87488 0.93909 1.98403 1.91391 1.12425 1.98276 0.93520 0.92963 0.95113 0.92381 0.77188 0.82702 0.75638 0.92677 0.91101 0.89714 0.92263 0.90377 0.91571 0.84776 0.84190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.37 9.47 37.16 0.35 -3.02 16 2 C 0.23 5.79 2.20 -69.08 -0.15 5.64 16 3 H 0.06 1.50 4.50 -51.93 -0.23 1.26 16 4 C -0.53 -14.91 9.05 -34.44 -0.31 -15.22 16 5 H 0.08 2.36 8.06 -52.49 -0.42 1.93 16 6 C 0.08 2.36 5.47 -17.82 -0.10 2.27 16 7 N -0.89 -27.10 13.96 55.43 0.77 -26.33 16 8 Si 0.87 22.36 27.31 -169.99 -4.64 17.72 16 9 H -0.27 -7.09 7.11 56.52 0.40 -6.69 16 10 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 11 H -0.26 -6.47 6.36 56.52 0.36 -6.11 16 12 N -0.69 -15.58 5.02 -55.90 -0.28 -15.87 16 13 C 0.54 11.60 7.73 -12.36 -0.10 11.50 16 14 O -0.53 -12.77 13.62 5.31 0.07 -12.70 16 15 C -0.10 -1.72 5.87 -104.96 -0.62 -2.33 16 16 C -0.08 -1.21 8.18 -38.99 -0.32 -1.53 16 17 C 0.16 1.89 6.29 -83.72 -0.53 1.36 16 18 N -0.68 -6.65 5.18 -14.25 -0.07 -6.73 16 19 C 0.70 8.67 8.12 -86.92 -0.71 7.96 16 20 O -0.56 -9.62 13.37 5.28 0.07 -9.55 16 21 N -0.63 -5.61 3.27 -195.33 -0.64 -6.25 16 22 C 0.10 0.84 10.44 59.85 0.62 1.46 16 23 C 0.08 0.32 10.16 59.85 0.61 0.93 16 24 C -0.12 -1.18 9.95 -39.32 -0.39 -1.57 16 25 C -0.10 -1.17 9.81 -39.63 -0.39 -1.56 16 26 C -0.01 -0.09 6.35 -39.05 -0.25 -0.34 16 27 Cl -0.03 -0.57 26.01 -51.86 -1.35 -1.92 16 28 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 32 H 0.39 8.29 6.62 -40.82 -0.27 8.02 16 33 H 0.16 2.68 4.58 -52.48 -0.24 2.44 16 34 H 0.41 2.32 6.62 -40.82 -0.27 2.05 16 35 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.39 8.07 -51.93 -0.42 -0.03 16 37 H 0.08 0.93 7.42 -51.93 -0.39 0.54 16 38 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 39 H 0.08 0.21 8.07 -51.93 -0.42 -0.21 16 40 H 0.07 0.18 6.43 -51.93 -0.33 -0.16 16 41 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 42 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 362.91 15.07 5.47 5.47 Total: -1.00 -36.45 362.91 -8.00 -44.45 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -5.13 Total: 6.16 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: -2.27 Total: 5.55 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: -0.22 Total: -55.17 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: 0.14 Total: -22.25 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.64 Total: 17.72 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.35 Total: -1.92 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -36.45 -8.00 -44.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119686766.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.510 kcal (2) G-P(sol) polarization free energy of solvation -36.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds