Wall clock time and date at job start Tue Mar 31 2020 23:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47154 * 2 1 4 4 C 1.50699 * 109.46986 * 239.99806 * 2 1 3 5 5 H 1.08002 * 120.00001 * 274.93893 * 4 2 1 6 6 C 1.37879 * 119.99816 * 94.93661 * 4 2 1 7 7 N 1.31518 * 119.99887 * 184.88623 * 6 4 2 8 8 Si 1.86804 * 120.00142 * 4.88089 * 6 4 2 9 9 H 1.48498 * 109.46714 * 94.86648 * 8 6 4 10 10 H 1.48499 * 109.47281 * 214.86897 * 8 6 4 11 11 H 1.48498 * 109.46739 * 334.86998 * 8 6 4 12 12 N 1.46496 * 109.46569 * 120.00247 * 2 1 3 13 13 C 1.34776 * 120.00097 * 274.99223 * 12 2 1 14 14 O 1.21566 * 119.99931 * 0.02562 * 13 12 2 15 15 C 1.47779 * 120.00222 * 180.02562 * 13 12 2 16 16 C 1.39547 * 120.12559 * 359.72440 * 15 13 12 17 17 C 1.38532 * 119.79489 * 179.76793 * 16 15 13 18 18 N 1.40031 * 119.98171 * 180.27494 * 17 16 15 19 19 C 1.34774 * 119.99714 * 35.33858 * 18 17 16 20 20 O 1.21593 * 120.00262 * 355.37604 * 19 18 17 21 21 N 1.34780 * 119.99908 * 175.37215 * 19 18 17 22 22 C 1.46505 * 119.99973 * 180.02562 * 21 19 18 23 23 C 1.46501 * 119.99781 * 0.02562 * 21 19 18 24 24 C 1.39008 * 120.03991 * 0.50967 * 17 16 15 25 25 C 1.38166 * 120.24714 * 359.74832 * 24 17 16 26 26 C 1.38180 * 120.20856 * 359.97438 * 25 24 17 27 27 Cl 1.73594 * 120.02286 * 179.97438 * 26 25 24 28 28 H 1.08996 * 109.47473 * 175.01376 * 1 2 3 29 29 H 1.09004 * 109.46893 * 55.01154 * 1 2 3 30 30 H 1.09001 * 109.47166 * 295.01426 * 1 2 3 31 31 H 0.96999 * 119.99958 * 179.97438 * 7 6 4 32 32 H 0.96997 * 120.00028 * 95.00518 * 12 2 1 33 33 H 1.08005 * 120.09751 * 0.02562 * 16 15 13 34 34 H 0.96994 * 120.00194 * 215.34357 * 18 17 16 35 35 H 1.09000 * 109.46757 * 90.00440 * 22 21 19 36 36 H 1.08995 * 109.46773 * 209.99848 * 22 21 19 37 37 H 1.08993 * 109.46648 * 330.00166 * 22 21 19 38 38 H 1.08994 * 109.47099 * 90.00272 * 23 21 19 39 39 H 1.09007 * 109.46691 * 209.99800 * 23 21 19 40 40 H 1.08999 * 109.47113 * 330.00004 * 23 21 19 41 41 H 1.08001 * 119.87794 * 179.71581 * 24 17 16 42 42 H 1.07997 * 119.89735 * 179.97438 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.1364 -1.7854 -1.2286 6 6 2.3590 0.0119 -2.3585 7 7 2.7052 -0.6134 -3.4625 8 14 2.3096 1.8789 -2.3189 9 1 3.6660 2.4035 -2.0183 10 1 1.8623 2.3904 -3.6392 11 1 1.3615 2.3267 -1.2674 12 7 2.0182 -0.6907 1.1961 13 6 2.1470 -0.0184 2.3571 14 8 1.8576 1.1611 2.4118 15 6 2.6400 -0.7149 3.5636 16 6 2.9675 -2.0701 3.5053 17 6 3.4336 -2.7151 4.6392 18 7 3.7688 -4.0736 4.5836 19 6 4.3252 -4.5852 3.4677 20 8 4.4588 -3.8882 2.4804 21 7 4.7334 -5.8695 3.4462 22 6 5.3386 -6.4255 2.2334 23 6 4.5719 -6.7095 4.6356 24 6 3.5641 -2.0158 5.8335 25 6 3.2352 -0.6753 5.8945 26 6 2.7748 -0.0204 4.7683 27 17 2.3624 1.6639 4.8506 28 1 -0.3634 -1.0237 -0.0893 29 1 -0.3633 0.5893 -0.8420 30 1 -0.3633 0.4345 0.9313 31 1 2.9346 -0.1052 -4.2562 32 1 2.2489 -1.6318 1.1526 33 1 2.8618 -2.6134 2.5778 34 1 3.6006 -4.6463 5.3481 35 1 6.4176 -6.2737 2.2634 36 1 5.1233 -7.4924 2.1762 37 1 4.9253 -5.9240 1.3584 38 1 3.6030 -7.2075 4.5998 39 1 5.3642 -7.4576 4.6623 40 1 4.6283 -6.0883 5.5294 41 1 3.9234 -2.5224 6.7171 42 1 3.3384 -0.1376 6.8254 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119686766.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:52 Heat of formation + Delta-G solvation = -45.642636 kcal Electronic energy + Delta-G solvation = -27192.565834 eV Core-core repulsion = 23198.552905 eV Total energy + Delta-G solvation = -3994.012929 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.98232 -40.90938 -39.41553 -37.48478 -36.69322 -36.62629 -35.73718 -34.45349 -32.90022 -30.95405 -30.70050 -28.74609 -27.36788 -26.87580 -25.40140 -23.86602 -22.59008 -21.37526 -21.14523 -20.09138 -19.10573 -18.50307 -17.86871 -17.44477 -17.18201 -17.02537 -16.26436 -16.12074 -15.93455 -15.72818 -15.26072 -15.07581 -14.74819 -14.53932 -14.46956 -14.27009 -14.09431 -13.51242 -13.44282 -13.37044 -13.24474 -13.08073 -13.02044 -12.83394 -12.79643 -12.62310 -12.53392 -12.04020 -11.85857 -11.42095 -11.23632 -11.13918 -10.85859 -10.46446 -10.18316 -9.82261 -9.76508 -9.10775 -8.41220 -6.47803 -0.33165 0.08541 1.21171 1.26671 1.31082 1.43968 1.45864 1.75278 2.05497 2.25373 2.36755 2.71886 2.80900 3.00916 3.62714 3.72693 4.09271 4.11275 4.22533 4.30659 4.36564 4.43119 4.51113 4.64063 4.71060 4.77188 4.79443 4.82372 4.89074 4.96026 5.02362 5.04563 5.13736 5.21898 5.33362 5.42886 5.43445 5.69531 5.74478 5.77585 6.09377 6.55285 6.74730 6.81881 7.16976 7.35550 7.36759 8.74426 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.008885 B = 0.004367 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3150.697676 B = 6409.872882 C = 9092.974102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.233 3.767 3 H 0.037 0.963 4 C -0.528 4.528 5 H 0.048 0.952 6 C 0.033 3.967 7 N -0.930 5.930 8 Si 0.928 3.072 9 H -0.276 1.276 10 H -0.270 1.270 11 H -0.251 1.251 12 N -0.700 5.700 13 C 0.534 3.466 14 O -0.562 6.562 15 C -0.127 4.127 16 C -0.091 4.091 17 C 0.156 3.844 18 N -0.665 5.665 19 C 0.688 3.312 20 O -0.616 6.616 21 N -0.629 5.629 22 C 0.097 3.903 23 C 0.067 3.933 24 C -0.086 4.086 25 C -0.089 4.089 26 C -0.019 4.019 27 Cl -0.053 7.053 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.039 0.961 31 H 0.271 0.729 32 H 0.397 0.603 33 H 0.130 0.870 34 H 0.429 0.571 35 H 0.059 0.941 36 H 0.104 0.896 37 H 0.048 0.952 38 H 0.072 0.928 39 H 0.098 0.902 40 H 0.087 0.913 41 H 0.192 0.808 42 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.125 -14.150 26.709 30.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.129 3.871 3 H 0.055 0.945 4 C -0.567 4.567 5 H 0.066 0.934 6 C -0.167 4.167 7 N -0.568 5.568 8 Si 0.752 3.248 9 H -0.202 1.202 10 H -0.195 1.195 11 H -0.175 1.175 12 N -0.349 5.349 13 C 0.321 3.679 14 O -0.443 6.443 15 C -0.132 4.132 16 C -0.113 4.113 17 C 0.061 3.939 18 N -0.317 5.317 19 C 0.390 3.610 20 O -0.495 6.495 21 N -0.366 5.366 22 C -0.046 4.046 23 C -0.074 4.074 24 C -0.106 4.106 25 C -0.108 4.108 26 C -0.048 4.048 27 Cl -0.023 7.023 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.081 0.919 32 H 0.232 0.768 33 H 0.147 0.853 34 H 0.271 0.729 35 H 0.077 0.923 36 H 0.123 0.877 37 H 0.067 0.933 38 H 0.091 0.909 39 H 0.117 0.883 40 H 0.105 0.895 41 H 0.209 0.791 42 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 4.065 -12.785 25.794 29.074 hybrid contribution 0.089 0.215 -0.805 0.838 sum 4.154 -12.570 24.989 28.279 Atomic orbital electron populations 1.22077 0.96777 1.01100 0.99694 1.19019 0.92225 0.93336 0.82477 0.94533 1.21160 1.44701 0.94476 0.96313 0.93395 1.25639 0.93500 1.02813 0.94782 1.69993 1.46562 1.37830 1.02449 0.86009 0.79435 0.80926 0.78389 1.20201 1.19464 1.17525 1.46436 1.64847 1.14150 1.09477 1.18690 0.78461 0.86762 0.83976 1.90766 1.52059 1.16067 1.85434 1.19704 1.05477 0.94497 0.93491 1.21385 0.97005 0.92716 1.00202 1.17493 0.97881 0.84140 0.94436 1.42407 1.63864 1.07818 1.17569 1.16249 0.78706 0.82950 0.83124 1.91026 1.62991 1.60113 1.35392 1.47058 1.63762 1.08977 1.16800 1.21669 0.97702 0.99780 0.85406 1.22139 1.04044 0.95654 0.85566 1.21407 0.98736 0.92809 0.97657 1.21214 0.97868 0.94457 0.97288 1.21257 1.02266 0.86772 0.94520 1.98392 1.91690 1.13987 1.98271 0.92756 0.92878 0.94232 0.91941 0.76754 0.85250 0.72876 0.92281 0.87717 0.93329 0.90948 0.88331 0.89461 0.79119 0.80417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.46 9.47 71.98 0.68 -5.77 16 2 C 0.23 12.20 2.20 44.25 0.10 12.30 16 3 H 0.04 2.06 4.50 -2.39 -0.01 2.05 16 4 C -0.53 -31.27 9.05 25.60 0.23 -31.04 16 5 H 0.05 3.06 8.06 -2.91 -0.02 3.04 16 6 C 0.03 1.98 5.47 84.65 0.46 2.44 16 7 N -0.93 -58.43 13.96 21.45 0.30 -58.13 16 8 Si 0.93 47.20 27.31 68.60 1.87 49.08 16 9 H -0.28 -14.03 7.11 99.48 0.71 -13.33 16 10 H -0.27 -12.93 7.11 99.48 0.71 -12.23 16 11 H -0.25 -12.54 6.36 99.48 0.63 -11.90 16 12 N -0.70 -33.11 5.02 -449.05 -2.25 -35.36 16 13 C 0.53 23.94 7.73 86.77 0.67 24.61 16 14 O -0.56 -27.74 13.62 -3.93 -0.05 -27.80 16 15 C -0.13 -4.54 5.87 -20.08 -0.12 -4.66 16 16 C -0.09 -2.91 8.18 22.66 0.19 -2.73 16 17 C 0.16 3.41 6.29 38.09 0.24 3.65 16 18 N -0.66 -11.03 5.18 -317.25 -1.64 -12.67 16 19 C 0.69 16.52 8.12 179.05 1.45 17.98 16 20 O -0.62 -22.38 13.37 -4.01 -0.05 -22.44 16 21 N -0.63 -10.04 3.27 -890.17 -2.91 -12.96 16 22 C 0.10 1.58 10.44 127.77 1.33 2.91 16 23 C 0.07 0.30 10.16 127.77 1.30 1.60 16 24 C -0.09 -1.23 9.95 22.44 0.22 -1.01 16 25 C -0.09 -1.66 9.81 22.24 0.22 -1.44 16 26 C -0.02 -0.58 6.35 22.61 0.14 -0.43 16 27 Cl -0.05 -1.72 26.01 -2.72 -0.07 -1.79 16 28 H 0.05 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.05 2.43 8.14 -2.38 -0.02 2.41 16 30 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 32 H 0.40 18.09 6.62 -92.71 -0.61 17.48 16 33 H 0.13 4.80 4.58 -2.91 -0.01 4.78 16 34 H 0.43 2.89 6.62 -92.71 -0.61 2.28 16 35 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.10 0.94 8.07 -2.39 -0.02 0.92 16 37 H 0.05 1.15 7.42 -2.39 -0.02 1.13 16 38 H 0.07 0.19 8.14 -2.39 -0.02 0.17 16 39 H 0.10 0.10 8.07 -2.38 -0.02 0.08 16 40 H 0.09 0.03 6.43 -2.39 -0.02 0.01 16 41 H 0.19 0.71 8.06 -2.91 -0.02 0.69 16 42 H 0.18 2.01 8.06 -2.91 -0.02 1.99 16 Total: -1.00 -86.07 362.91 2.09 -83.97 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: -0.21 Total: 19.69 kcal Atomic # 6 Polarization: 11.28 SS G_CDS: 7.12 Total: 18.40 kcal Atomic # 7 Polarization: -112.61 SS G_CDS: -6.51 Total: -119.12 kcal Atomic # 8 Polarization: -50.13 SS G_CDS: -0.11 Total: -50.23 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 1.87 Total: 49.08 kcal Atomic # 17 Polarization: -1.72 SS G_CDS: -0.07 Total: -1.79 kcal Total: -86.07 2.09 -83.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119686766.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.331 kcal (2) G-P(sol) polarization free energy of solvation -86.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds