Wall clock time and date at job start Tue Mar 31 2020 23:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46492 * 109.47237 * 2 1 4 4 C 1.36904 * 120.00436 * 82.66043 * 3 2 1 5 5 H 1.08001 * 120.00256 * 169.65032 * 4 3 2 6 6 C 1.39019 * 119.99837 * 349.92076 * 4 3 2 7 7 N 1.31385 * 119.99878 * 14.62228 * 6 4 3 8 8 Si 1.86800 * 120.00077 * 194.62187 * 6 4 3 9 9 H 1.48494 * 109.47201 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46753 * 119.99949 * 8 6 4 11 11 H 1.48494 * 109.47225 * 239.99826 * 8 6 4 12 12 C 1.34775 * 119.99897 * 262.65711 * 3 2 1 13 13 O 1.21630 * 120.00181 * 174.69231 * 12 3 2 14 14 C 1.47404 * 119.99903 * 354.68869 * 12 3 2 15 15 C 1.39870 * 120.09020 * 53.22370 * 14 12 3 16 16 C 1.37590 * 119.93161 * 179.74371 * 15 14 12 17 17 C 1.39208 * 120.11417 * 0.55315 * 16 15 14 18 18 N 1.39441 * 119.90592 * 179.72021 * 17 16 15 19 19 C 1.34780 * 120.00061 * 213.72900 * 18 17 16 20 20 O 1.21582 * 119.99854 * 5.55024 * 19 18 17 21 21 N 1.34773 * 119.99841 * 185.55422 * 19 18 17 22 22 C 1.46506 * 119.99871 * 185.22633 * 21 19 18 23 23 C 1.46498 * 120.00108 * 5.22508 * 21 19 18 24 24 C 1.39062 * 120.18757 * 359.69724 * 17 16 15 25 25 C 1.37833 * 120.06617 * 0.02562 * 24 17 16 26 26 Cl 1.73597 * 120.06186 * 179.97438 * 25 24 17 27 27 H 1.08998 * 109.46963 * 42.79830 * 1 2 3 28 28 H 1.09000 * 109.47052 * 162.79164 * 1 2 3 29 29 H 1.09004 * 109.47278 * 282.79665 * 1 2 3 30 30 H 1.09000 * 109.47340 * 239.99321 * 2 1 3 31 31 H 1.09005 * 109.46550 * 119.99958 * 2 1 3 32 32 H 0.96997 * 119.99996 * 180.02562 * 7 6 4 33 33 H 1.08001 * 120.02780 * 359.97438 * 15 14 12 34 34 H 1.07994 * 119.94090 * 180.26984 * 16 15 14 35 35 H 0.96999 * 120.00017 * 33.73200 * 18 17 16 36 36 H 1.09001 * 109.46983 * 89.99635 * 22 21 19 37 37 H 1.08993 * 109.46869 * 210.00342 * 22 21 19 38 38 H 1.08997 * 109.46579 * 329.99760 * 22 21 19 39 39 H 1.08997 * 109.47530 * 5.02314 * 23 21 19 40 40 H 1.09008 * 109.47211 * 125.02198 * 23 21 19 41 41 H 1.08997 * 109.47122 * 245.01650 * 23 21 19 42 42 H 1.08001 * 119.97051 * 180.02562 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1038 2.0771 1.1759 5 1 2.6156 3.0277 1.2048 6 6 1.5365 1.5575 2.3338 7 7 1.1767 0.2947 2.3796 8 14 1.2859 2.6547 3.8247 9 1 1.7701 4.0246 3.5181 10 1 -0.1589 2.7054 4.1647 11 1 2.0464 2.1065 4.9763 12 6 2.3836 1.9667 -1.1576 13 8 2.6969 3.1419 -1.1724 14 6 2.4035 1.1829 -2.4059 15 6 1.2688 0.4681 -2.8032 16 6 1.2892 -0.2582 -3.9716 17 6 2.4408 -0.2919 -4.7530 18 7 2.4586 -1.0341 -5.9334 19 6 3.5945 -1.6410 -6.3308 20 8 4.5750 -1.6266 -5.6120 21 7 3.6434 -2.2638 -7.5250 22 6 4.8381 -3.0204 -7.9081 23 6 2.5021 -2.1842 -8.4400 24 6 3.5734 0.4128 -4.3599 25 6 3.5595 1.1474 -3.1938 26 17 4.9737 2.0265 -2.7029 27 1 -0.3633 0.7540 -0.6982 28 1 -0.3633 -0.9817 -0.3040 29 1 -0.3634 0.2276 1.0022 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8901 32 1 0.7806 -0.0677 3.1874 33 1 0.3764 0.4892 -2.1952 34 1 0.4118 -0.8066 -4.2807 35 1 1.6535 -1.1135 -6.4685 36 1 4.7347 -4.0541 -7.5782 37 1 4.9525 -2.9944 -8.9917 38 1 5.7157 -2.5754 -7.4393 39 1 1.7506 -1.5120 -8.0259 40 1 2.8363 -1.8047 -9.4057 41 1 2.0703 -3.1766 -8.5694 42 1 4.4648 0.3844 -4.9690 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121776243.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:16 Heat of formation + Delta-G solvation = 6.256760 kcal Electronic energy + Delta-G solvation = -27424.885757 eV Core-core repulsion = 23433.123355 eV Total energy + Delta-G solvation = -3991.762402 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.93942 -39.37921 -37.76545 -36.07985 -35.77573 -35.06534 -34.66783 -31.80414 -30.55800 -29.82149 -29.34479 -28.26820 -26.38931 -25.02230 -22.98561 -22.64105 -21.95368 -20.26256 -19.48321 -18.73643 -17.55963 -17.02234 -16.53511 -16.20067 -15.70112 -15.22022 -14.90660 -14.37087 -14.31432 -14.14902 -13.97493 -13.74437 -13.32564 -13.16211 -13.03542 -12.94575 -12.79220 -12.57802 -12.34955 -12.06304 -11.63164 -11.44689 -11.39316 -11.12590 -11.02301 -10.78543 -10.45283 -10.32544 -10.26298 -10.23070 -9.97095 -9.74412 -9.08118 -8.89657 -8.47409 -8.43224 -7.84092 -7.71779 -6.19429 -3.80429 1.24213 1.53585 2.25216 2.65705 2.86886 3.14871 3.26401 3.34695 3.51157 3.69715 4.06162 4.19013 4.54930 4.83590 4.86615 4.87674 5.07946 5.13602 5.15178 5.20916 5.25202 5.46677 5.55693 5.58438 5.63458 5.90853 6.01283 6.20220 6.26163 6.36783 6.42051 6.57117 6.62784 6.68300 6.72426 6.78153 7.04679 7.38296 7.51853 7.61192 7.73495 8.11119 8.24501 8.56675 9.18082 9.44580 9.99944 10.63702 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.020612 B = 0.003074 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.098511 B = 9105.034551 C = 9825.282969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.098 3.902 3 N -0.429 5.429 4 C -0.288 4.288 5 H 0.105 0.895 6 C 0.026 3.974 7 N -0.871 5.871 8 Si 0.927 3.073 9 H -0.268 1.268 10 H -0.280 1.280 11 H -0.282 1.282 12 C 0.476 3.524 13 O -0.576 6.576 14 C -0.094 4.094 15 C -0.071 4.071 16 C -0.149 4.149 17 C 0.168 3.832 18 N -0.681 5.681 19 C 0.702 3.298 20 O -0.563 6.563 21 N -0.637 5.637 22 C 0.102 3.898 23 C 0.078 3.922 24 C -0.120 4.120 25 C 0.016 3.984 26 Cl -0.050 7.050 27 H 0.029 0.971 28 H 0.035 0.965 29 H 0.085 0.915 30 H 0.033 0.967 31 H 0.133 0.867 32 H 0.265 0.735 33 H 0.148 0.852 34 H 0.129 0.871 35 H 0.406 0.594 36 H 0.053 0.947 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.545 -9.173 -19.817 21.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.025 4.025 3 N -0.146 5.146 4 C -0.416 4.416 5 H 0.123 0.877 6 C -0.175 4.175 7 N -0.513 5.513 8 Si 0.754 3.246 9 H -0.192 1.192 10 H -0.206 1.206 11 H -0.208 1.208 12 C 0.264 3.736 13 O -0.461 6.461 14 C -0.099 4.099 15 C -0.091 4.091 16 C -0.170 4.170 17 C 0.073 3.927 18 N -0.331 5.331 19 C 0.404 3.596 20 O -0.438 6.438 21 N -0.375 5.375 22 C -0.041 4.041 23 C -0.065 4.065 24 C -0.141 4.141 25 C -0.013 4.013 26 Cl -0.021 7.021 27 H 0.047 0.953 28 H 0.054 0.946 29 H 0.103 0.897 30 H 0.052 0.948 31 H 0.150 0.850 32 H 0.077 0.923 33 H 0.165 0.835 34 H 0.147 0.853 35 H 0.244 0.756 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.589 -8.667 -19.128 21.008 hybrid contribution -0.647 0.156 0.274 0.720 sum -1.236 -8.511 -18.854 20.723 Atomic orbital electron populations 1.22343 0.97273 0.97966 1.03133 1.22110 0.94196 0.83682 1.02554 1.43765 1.53686 1.11923 1.05218 1.19831 1.32787 1.04085 0.84860 0.87686 1.25268 0.96705 0.96185 0.99354 1.69897 1.41764 1.11411 1.28224 0.85829 0.78045 0.80389 0.80312 1.19200 1.20606 1.20848 1.17569 0.86019 0.87276 0.82761 1.90648 1.54400 1.15494 1.85513 1.20195 0.92931 0.99195 0.97572 1.21510 0.98322 0.94078 0.95172 1.20762 0.97816 1.03294 0.95154 1.17252 0.95033 0.93497 0.86962 1.42608 1.12839 1.53150 1.24525 1.15857 0.83523 0.78458 0.81797 1.90993 1.34671 1.64196 1.53932 1.46909 1.18690 1.55453 1.16458 1.21546 0.87086 0.95300 1.00193 1.21786 0.88496 1.02214 0.94030 1.20784 0.99369 0.97051 0.96917 1.20675 0.88882 0.96679 0.95063 1.98372 1.38163 1.74372 1.91177 0.95262 0.94591 0.89691 0.94847 0.84951 0.92328 0.83498 0.85285 0.75577 0.92809 0.91146 0.90079 0.91054 0.91355 0.91845 0.83909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 8.67 37.16 0.32 -2.75 16 2 C 0.10 2.23 4.90 -4.05 -0.02 2.21 16 3 N -0.43 -11.12 2.63 -116.04 -0.31 -11.42 16 4 C -0.29 -7.94 9.44 -15.00 -0.14 -8.08 16 5 H 0.11 3.07 7.28 -52.49 -0.38 2.69 16 6 C 0.03 0.67 5.19 -17.45 -0.09 0.58 16 7 N -0.87 -21.73 7.56 55.50 0.42 -21.31 16 8 Si 0.93 20.51 29.58 -169.99 -5.03 15.48 16 9 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 10 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 11 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 12 C 0.48 12.16 6.55 -12.53 -0.08 12.07 16 13 O -0.58 -16.45 15.74 5.25 0.08 -16.37 16 14 C -0.09 -2.00 4.79 -104.92 -0.50 -2.50 16 15 C -0.07 -1.25 7.60 -39.21 -0.30 -1.55 16 16 C -0.15 -2.11 9.94 -39.46 -0.39 -2.50 16 17 C 0.17 2.48 6.27 -83.73 -0.52 1.95 16 18 N -0.68 -7.68 5.17 -14.22 -0.07 -7.75 16 19 C 0.70 8.94 7.99 -86.92 -0.69 8.24 16 20 O -0.56 -9.59 13.60 5.29 0.07 -9.52 16 21 N -0.64 -5.57 3.27 -195.34 -0.64 -6.21 16 22 C 0.10 0.74 10.52 59.85 0.63 1.37 16 23 C 0.08 0.35 10.60 59.85 0.63 0.99 16 24 C -0.12 -2.11 8.40 -39.42 -0.33 -2.44 16 25 C 0.02 0.32 6.34 -39.09 -0.25 0.07 16 26 Cl -0.05 -1.04 27.33 -51.86 -1.42 -2.46 16 27 H 0.03 0.58 6.38 -51.93 -0.33 0.25 16 28 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.08 1.93 5.98 -51.93 -0.31 1.62 16 30 H 0.03 0.71 5.48 -51.93 -0.28 0.43 16 31 H 0.13 3.32 5.59 -51.93 -0.29 3.03 16 32 H 0.27 6.26 8.31 -40.82 -0.34 5.93 16 33 H 0.15 2.53 4.53 -52.49 -0.24 2.29 16 34 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 35 H 0.41 2.98 6.33 -40.82 -0.26 2.73 16 36 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.32 8.07 -51.93 -0.42 -0.10 16 38 H 0.08 0.75 7.35 -51.93 -0.38 0.36 16 39 H 0.07 0.25 5.61 -51.93 -0.29 -0.04 16 40 H 0.07 0.22 8.14 -51.92 -0.42 -0.20 16 41 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 42 H 0.14 2.53 6.43 -52.49 -0.34 2.19 16 LS Contribution 351.39 15.07 5.30 5.30 Total: -1.00 -33.59 351.39 -8.11 -41.69 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -4.77 Total: 4.89 kcal Atomic # 6 Polarization: 9.41 SS G_CDS: -1.74 Total: 7.67 kcal Atomic # 7 Polarization: -46.09 SS G_CDS: -0.60 Total: -46.69 kcal Atomic # 8 Polarization: -26.04 SS G_CDS: 0.15 Total: -25.89 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.03 Total: 15.48 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -1.42 Total: -2.46 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.59 -8.11 -41.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121776243.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.950 kcal (2) G-P(sol) polarization free energy of solvation -33.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds