Wall clock time and date at job start Tue Mar 31 2020 23:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46507 * 109.47254 * 2 1 4 4 C 1.46495 * 120.00040 * 270.00276 * 3 2 1 5 5 C 1.50701 * 109.47271 * 269.99771 * 4 3 2 6 6 H 1.08004 * 119.99547 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00305 * 180.02562 * 5 4 3 8 8 N 1.31517 * 120.00154 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00332 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47022 * 89.99692 * 9 7 5 11 11 H 1.48500 * 109.47367 * 209.99941 * 9 7 5 12 12 H 1.48503 * 109.46795 * 329.99903 * 9 7 5 13 13 C 1.34775 * 119.99678 * 89.99873 * 3 2 1 14 14 O 1.21282 * 119.99970 * 180.02562 * 13 3 2 15 15 C 1.50702 * 120.00224 * 0.02562 * 13 3 2 16 16 N 1.46503 * 109.47059 * 179.97438 * 15 13 3 17 17 C 1.38880 * 119.99924 * 179.97438 * 16 15 13 18 18 C 1.38921 * 120.16642 * 0.23499 * 17 16 15 19 19 C 1.38000 * 120.09722 * 180.23258 * 18 17 16 20 20 C 1.38539 * 120.44341 * 359.78355 * 19 18 17 21 21 C 1.37930 * 120.34014 * 359.97438 * 20 19 18 22 22 Cl 1.73601 * 120.05363 * 179.97438 * 21 20 19 23 23 C 1.39867 * 119.88727 * 359.97438 * 21 20 19 24 24 C 1.47360 * 120.21477 * 179.97438 * 23 21 20 25 25 N 1.34777 * 119.99691 * 270.27197 * 24 23 21 26 26 O 1.21613 * 120.00001 * 89.99991 * 24 23 21 27 27 H 1.08997 * 109.47060 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46523 * 299.99753 * 1 2 3 29 29 H 1.08994 * 109.46899 * 59.99500 * 1 2 3 30 30 H 1.08997 * 109.47204 * 240.00166 * 2 1 3 31 31 H 1.09004 * 109.47309 * 120.00083 * 2 1 3 32 32 H 1.09003 * 109.47375 * 29.99728 * 4 3 2 33 33 H 1.09001 * 109.47224 * 149.99739 * 4 3 2 34 34 H 0.96996 * 120.00430 * 180.02562 * 8 7 5 35 35 H 1.08996 * 109.47101 * 59.99694 * 15 13 3 36 36 H 1.09005 * 109.46981 * 299.99545 * 15 13 3 37 37 H 0.96995 * 120.00226 * 0.02562 * 16 15 13 38 38 H 1.07992 * 119.95289 * 0.02562 * 18 17 16 39 39 H 1.07998 * 119.77954 * 179.76448 * 19 18 17 40 40 H 1.08007 * 119.83243 * 179.97438 * 20 19 18 41 41 H 0.97004 * 119.99647 * 179.72268 * 25 24 23 42 42 H 0.96990 * 120.00491 * 359.73091 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8351 -1.7038 6 1 4.3429 1.2310 -1.0958 7 6 4.1494 2.3906 -2.8774 8 7 3.3494 3.1267 -3.6176 9 14 5.9134 2.0965 -3.4171 10 1 5.9760 0.8760 -4.2607 11 1 6.3929 3.2641 -4.1994 12 1 6.7736 1.9156 -2.2202 13 6 2.2430 2.0165 1.1672 14 8 2.6469 3.1602 1.1673 15 6 1.9923 1.3059 2.4723 16 7 2.3101 2.2033 3.5859 17 6 2.1558 1.7668 4.8952 18 6 1.7050 0.4784 5.1530 19 6 1.5476 0.0477 6.4546 20 6 1.8408 0.8916 7.5135 21 6 2.2944 2.1728 7.2785 22 17 2.6590 3.2242 8.6109 23 6 2.4600 2.6234 5.9648 24 6 2.9436 3.9910 5.7053 25 7 2.0642 5.0055 5.5865 26 8 4.1364 4.2052 5.6034 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.5817 1.6878 -2.0284 33 1 2.0955 3.1411 -1.1383 34 1 3.6754 3.5172 -4.4434 35 1 2.6228 0.4187 2.5299 36 1 0.9444 1.0115 2.5303 37 1 2.6276 3.1026 3.4087 38 1 1.4742 -0.1862 4.3337 39 1 1.1932 -0.9537 6.6491 40 1 1.7137 0.5444 8.5284 41 1 2.3827 5.9064 5.4197 42 1 1.1129 4.8348 5.6678 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121927680.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:28:41 Heat of formation + Delta-G solvation = -81.653342 kcal Electronic energy + Delta-G solvation = -26866.448580 eV Core-core repulsion = 22870.874110 eV Total energy + Delta-G solvation = -3995.574470 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.50847 -40.77558 -39.38930 -37.76512 -37.13408 -36.20775 -34.92974 -34.75709 -32.08939 -31.66860 -31.03519 -29.41045 -27.57425 -25.18663 -24.87927 -24.13483 -22.61198 -21.86001 -20.18583 -19.28676 -18.69024 -18.48067 -17.97224 -17.82407 -17.34499 -16.98072 -16.65571 -16.21509 -16.05312 -15.55558 -15.28430 -15.04394 -14.85816 -14.75471 -14.67875 -14.43229 -14.21793 -13.90963 -13.57189 -13.27063 -13.10680 -13.03891 -12.68795 -12.66451 -12.54995 -12.42752 -12.18463 -12.07844 -11.89055 -11.75363 -11.26204 -11.13630 -10.79876 -10.78772 -10.66870 -9.84322 -9.52329 -8.60347 -8.26115 -6.40390 0.03441 0.44275 1.01215 1.33617 1.37074 1.40521 1.46590 1.66479 1.96044 2.34201 2.49718 2.51674 2.67590 3.04140 3.48630 3.83085 3.95050 4.07632 4.16294 4.23831 4.31356 4.35853 4.43961 4.45696 4.60698 4.67246 4.92906 5.00595 5.06866 5.08261 5.19207 5.22285 5.43369 5.45569 5.53528 5.63629 5.73529 5.79809 6.02308 6.06789 6.28479 6.36418 6.64936 6.72678 7.18048 7.21624 7.36256 8.80929 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.015385 B = 0.002799 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.498514 B =10000.346931 C =10977.244145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.093 3.907 3 N -0.594 5.594 4 C 0.263 3.737 5 C -0.544 4.544 6 H 0.053 0.947 7 C 0.009 3.991 8 N -0.927 5.927 9 Si 0.964 3.036 10 H -0.260 1.260 11 H -0.282 1.282 12 H -0.276 1.276 13 C 0.488 3.512 14 O -0.595 6.595 15 C 0.115 3.885 16 N -0.733 5.733 17 C 0.254 3.746 18 C -0.194 4.194 19 C -0.025 4.025 20 C -0.171 4.171 21 C 0.031 3.969 22 Cl -0.070 7.070 23 C -0.234 4.234 24 C 0.570 3.430 25 N -0.827 5.827 26 O -0.583 6.583 27 H 0.099 0.901 28 H 0.065 0.935 29 H 0.035 0.965 30 H 0.074 0.926 31 H 0.109 0.891 32 H 0.027 0.973 33 H -0.004 1.004 34 H 0.267 0.733 35 H 0.117 0.883 36 H 0.132 0.868 37 H 0.397 0.603 38 H 0.162 0.838 39 H 0.178 0.822 40 H 0.157 0.843 41 H 0.409 0.591 42 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.581 -10.810 22.334 27.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.028 4.028 3 N -0.325 5.325 4 C 0.141 3.859 5 C -0.582 4.582 6 H 0.071 0.929 7 C -0.190 4.190 8 N -0.567 5.567 9 Si 0.789 3.211 10 H -0.185 1.185 11 H -0.208 1.208 12 H -0.201 1.201 13 C 0.276 3.724 14 O -0.477 6.477 15 C -0.011 4.011 16 N -0.361 5.361 17 C 0.146 3.854 18 C -0.217 4.217 19 C -0.044 4.044 20 C -0.192 4.192 21 C 0.003 3.997 22 Cl -0.041 7.041 23 C -0.243 4.243 24 C 0.355 3.645 25 N -0.390 5.390 26 O -0.462 6.462 27 H 0.118 0.882 28 H 0.084 0.916 29 H 0.055 0.945 30 H 0.092 0.908 31 H 0.127 0.873 32 H 0.045 0.955 33 H 0.014 0.986 34 H 0.076 0.924 35 H 0.135 0.865 36 H 0.149 0.851 37 H 0.233 0.767 38 H 0.180 0.820 39 H 0.195 0.805 40 H 0.175 0.825 41 H 0.241 0.759 42 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -10.647 -10.215 22.025 26.511 hybrid contribution 1.018 1.614 -0.927 2.122 sum -9.630 -8.601 21.098 24.735 Atomic orbital electron populations 1.22171 0.94139 1.03838 1.01846 1.21898 0.95615 0.80753 1.04570 1.48217 1.63108 1.15341 1.05811 1.18716 0.95247 0.91542 0.80359 1.21711 0.97978 1.32029 1.06506 0.92897 1.25813 1.02172 0.94480 0.96531 1.70037 1.37703 1.34134 1.14800 0.85468 0.79207 0.78294 0.78169 1.18507 1.20788 1.20121 1.21154 0.77694 0.86688 0.86889 1.90665 1.48430 1.20897 1.87691 1.21370 1.04727 0.92992 0.82025 1.44521 1.72096 1.17323 1.02182 1.17733 0.92022 0.93303 0.82315 1.21134 1.07347 0.93424 0.99770 1.21432 0.92663 1.00315 0.90006 1.21094 1.04934 0.91092 1.02057 1.20732 0.99985 0.93058 0.85932 1.98380 1.93170 1.66705 1.45847 1.19000 1.16895 0.95502 0.92945 1.18320 0.85477 0.86001 0.74699 1.43739 1.10945 1.10713 1.73634 1.90842 1.18104 1.85460 1.51833 0.88225 0.91647 0.94548 0.90792 0.87322 0.95522 0.98611 0.92396 0.86515 0.85101 0.76660 0.82012 0.80486 0.82498 0.75929 0.75320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.20 10.24 71.98 0.74 -2.47 16 2 C 0.09 2.40 5.93 86.38 0.51 2.91 16 3 N -0.59 -23.17 2.46 -826.14 -2.03 -25.20 16 4 C 0.26 13.74 5.16 85.63 0.44 14.18 16 5 C -0.54 -30.97 9.39 25.60 0.24 -30.73 16 6 H 0.05 2.99 7.81 -2.91 -0.02 2.96 16 7 C 0.01 0.53 5.46 84.65 0.46 0.99 16 8 N -0.93 -55.83 13.29 21.45 0.28 -55.55 16 9 Si 0.96 45.13 29.54 68.60 2.03 47.16 16 10 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 12 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 13 C 0.49 18.82 7.74 87.66 0.68 19.50 16 14 O -0.60 -29.96 15.25 -3.04 -0.05 -30.01 16 15 C 0.12 2.79 3.93 85.63 0.34 3.13 16 16 N -0.73 -20.29 5.61 -342.53 -1.92 -22.21 16 17 C 0.25 5.81 6.66 38.71 0.26 6.06 16 18 C -0.19 -2.83 9.29 22.38 0.21 -2.62 16 19 C -0.03 -0.27 10.02 22.29 0.22 -0.05 16 20 C -0.17 -2.43 9.80 22.27 0.22 -2.22 16 21 C 0.03 0.64 6.35 22.59 0.14 0.79 16 22 Cl -0.07 -1.49 28.04 -2.72 -0.08 -1.57 16 23 C -0.23 -5.91 5.64 -19.96 -0.11 -6.02 16 24 C 0.57 16.97 5.32 86.64 0.46 17.43 16 25 N -0.83 -17.78 8.87 -175.93 -1.56 -19.34 16 26 O -0.58 -23.20 17.94 -4.07 -0.07 -23.27 16 27 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.06 1.11 7.22 -2.39 -0.02 1.10 16 29 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.07 2.10 8.07 -2.39 -0.02 2.08 16 31 H 0.11 1.87 6.44 -2.39 -0.02 1.85 16 32 H 0.03 1.41 8.07 -2.39 -0.02 1.39 16 33 H 0.00 -0.26 7.42 -2.39 -0.02 -0.28 16 34 H 0.27 15.12 8.31 -92.71 -0.77 14.34 16 35 H 0.12 2.24 7.19 -2.39 -0.02 2.22 16 36 H 0.13 2.11 6.99 -2.38 -0.02 2.09 16 37 H 0.40 13.89 6.28 -92.71 -0.58 13.31 16 38 H 0.16 1.43 6.71 -2.91 -0.02 1.41 16 39 H 0.18 0.46 8.06 -2.91 -0.02 0.43 16 40 H 0.16 1.48 8.06 -2.91 -0.02 1.46 16 41 H 0.41 8.05 8.93 -92.71 -0.83 7.22 16 42 H 0.42 6.49 8.81 -92.72 -0.82 5.67 16 Total: -1.00 -85.13 373.94 0.28 -84.85 By element: Atomic # 1 Polarization: 25.38 SS G_CDS: -1.13 Total: 24.25 kcal Atomic # 6 Polarization: 16.09 SS G_CDS: 4.81 Total: 20.90 kcal Atomic # 7 Polarization: -117.08 SS G_CDS: -5.23 Total: -122.30 kcal Atomic # 8 Polarization: -53.16 SS G_CDS: -0.12 Total: -53.28 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Atomic # 17 Polarization: -1.49 SS G_CDS: -0.08 Total: -1.57 kcal Total: -85.13 0.28 -84.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121927680.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.194 kcal (2) G-P(sol) polarization free energy of solvation -85.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds