Wall clock time and date at job start Tue Mar 31 2020 23:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47116 * 2 1 4 4 C 1.50702 * 109.46906 * 239.99633 * 2 1 3 5 5 H 1.07999 * 120.00186 * 240.00125 * 4 2 1 6 6 C 1.37882 * 119.99856 * 60.00133 * 4 2 1 7 7 N 1.31515 * 119.99767 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00014 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47030 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46948 * 120.00177 * 8 6 4 11 11 H 1.48493 * 109.47279 * 240.00069 * 8 6 4 12 12 N 1.46506 * 109.47087 * 119.99876 * 2 1 3 13 13 C 1.34770 * 120.00036 * 274.99723 * 12 2 1 14 14 O 1.21362 * 120.00365 * 0.02562 * 13 12 2 15 15 C 1.49323 * 119.99774 * 179.97438 * 13 12 2 16 16 O 1.21386 * 120.00457 * 0.02562 * 15 13 12 17 17 N 1.34787 * 119.99821 * 179.97438 * 15 13 12 18 18 C 1.39879 * 119.99625 * 185.53141 * 17 15 13 19 19 C 1.38748 * 120.10566 * 24.83044 * 18 17 15 20 20 C 1.38283 * 119.99004 * 179.97438 * 19 18 17 21 21 Cl 1.73602 * 119.91022 * 179.97438 * 20 19 18 22 22 C 1.38414 * 120.18602 * 359.97438 * 20 19 18 23 23 C 1.38224 * 120.19288 * 359.72335 * 22 20 19 24 24 C 1.38702 * 120.01120 * 0.55706 * 23 22 20 25 25 N 1.39907 * 120.09103 * 179.71544 * 24 23 22 26 26 C 1.46903 * 110.99514 * 59.72663 * 25 24 23 27 27 C 1.46899 * 110.99952 * 295.77322 * 25 24 23 28 28 H 1.09006 * 109.47013 * 299.99661 * 1 2 3 29 29 H 1.09000 * 109.47112 * 59.99965 * 1 2 3 30 30 H 1.09006 * 109.47132 * 180.02562 * 1 2 3 31 31 H 0.97001 * 120.00132 * 179.97438 * 7 6 4 32 32 H 0.97000 * 119.99674 * 94.99643 * 12 2 1 33 33 H 0.96998 * 119.99932 * 5.53621 * 17 15 13 34 34 H 1.08004 * 120.00383 * 359.94767 * 19 18 17 35 35 H 1.07994 * 119.90606 * 180.02562 * 22 20 19 36 36 H 1.08003 * 119.98765 * 180.27538 * 23 22 20 37 37 H 1.08998 * 109.47243 * 56.04668 * 26 25 24 38 38 H 1.09000 * 109.47067 * 296.04642 * 26 25 24 39 39 H 1.08999 * 109.46978 * 176.04513 * 26 25 24 40 40 H 1.08996 * 109.46833 * 183.94887 * 27 25 24 41 41 H 1.08998 * 109.47228 * 303.95089 * 27 25 24 42 42 H 1.09004 * 109.46776 * 63.95481 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2395 -2.4828 7 7 0.9427 0.8296 -2.6034 8 14 2.3223 -1.1197 -4.0079 9 1 3.1472 -2.2865 -3.6037 10 1 1.1676 -1.5867 -4.8164 11 1 3.1471 -0.1860 -4.8161 12 7 2.0184 -0.6906 1.1962 13 6 2.1471 -0.0183 2.3571 14 8 1.8581 1.1592 2.4118 15 6 2.6443 -0.7224 3.5765 16 8 2.9330 -1.9001 3.5220 17 7 2.7736 -0.0498 4.7374 18 6 3.3472 -0.6766 5.8486 19 6 4.2251 -1.7366 5.6735 20 6 4.7912 -2.3542 6.7737 21 17 5.8889 -3.6808 6.5523 22 6 4.4851 -1.9176 8.0510 23 6 3.6163 -0.8582 8.2340 24 6 3.0393 -0.2367 7.1365 25 7 2.1551 0.8319 7.3200 26 6 2.8095 1.9411 8.0267 27 6 0.9441 0.3973 8.0290 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 0.7086 1.1612 -3.4844 32 1 2.2490 -1.6318 1.1527 33 1 2.4688 0.8688 4.8022 34 1 4.4660 -2.0797 4.6781 35 1 4.9301 -2.4029 8.9070 36 1 3.3832 -0.5175 9.2320 37 1 3.7031 2.2432 7.4805 38 1 3.0885 1.6186 9.0298 39 1 2.1224 2.7846 8.0942 40 1 0.2442 1.2301 8.0965 41 1 0.4795 -0.4246 7.4844 42 1 1.2103 0.0642 9.0321 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122915714.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:18 Heat of formation + Delta-G solvation = -52.307740 kcal Electronic energy + Delta-G solvation = -26753.765785 eV Core-core repulsion = 22759.463835 eV Total energy + Delta-G solvation = -3994.301949 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.29619 -40.91715 -39.59205 -38.11475 -37.15153 -36.87993 -35.89274 -34.34061 -31.46251 -31.02798 -30.52608 -28.49376 -27.38794 -26.44134 -25.59576 -23.95371 -22.42736 -22.23242 -21.24518 -20.12818 -18.94703 -18.20114 -17.86984 -17.35644 -17.25409 -16.92165 -16.52214 -16.20173 -16.06404 -15.74915 -15.32906 -15.13949 -14.80520 -14.72352 -14.46279 -14.32471 -13.77647 -13.65591 -13.42023 -13.22618 -13.06782 -12.92438 -12.82383 -12.79554 -12.65789 -12.61825 -12.39620 -12.30387 -12.12877 -11.97199 -11.54792 -11.15345 -10.70481 -10.60885 -10.00052 -9.83548 -9.57671 -9.23878 -8.20822 -6.37965 -0.25113 0.01130 0.54755 1.03333 1.28631 1.44410 1.46695 1.58419 2.06567 2.38511 2.49465 2.66440 2.80380 3.10163 3.43763 3.73954 3.98984 4.08739 4.16604 4.28890 4.41703 4.49682 4.64861 4.65830 4.69616 4.75218 4.88270 4.99342 5.01131 5.02842 5.07210 5.14619 5.16567 5.29533 5.42819 5.50879 5.59081 5.74958 5.87553 5.95913 6.02986 6.21583 6.49134 6.63985 6.74230 7.04923 7.34260 8.85602 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.014024 B = 0.002779 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.098807 B =10072.523798 C =11733.002407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.268 3.732 3 H 0.016 0.984 4 C -0.552 4.552 5 H 0.070 0.930 6 C 0.020 3.980 7 N -0.912 5.912 8 Si 0.972 3.028 9 H -0.264 1.264 10 H -0.277 1.277 11 H -0.281 1.281 12 N -0.669 5.669 13 C 0.496 3.504 14 O -0.555 6.555 15 C 0.515 3.485 16 O -0.515 6.515 17 N -0.620 5.620 18 C 0.162 3.838 19 C -0.137 4.137 20 C -0.024 4.024 21 Cl -0.065 7.065 22 C -0.108 4.108 23 C -0.105 4.105 24 C 0.067 3.933 25 N -0.529 5.529 26 C 0.026 3.974 27 C 0.030 3.970 28 H 0.020 0.980 29 H 0.074 0.926 30 H 0.039 0.961 31 H 0.268 0.732 32 H 0.410 0.590 33 H 0.434 0.566 34 H 0.139 0.861 35 H 0.162 0.838 36 H 0.166 0.834 37 H 0.064 0.936 38 H 0.051 0.949 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.055 0.945 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.130 -2.828 26.303 26.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.166 3.834 3 H 0.034 0.966 4 C -0.591 4.591 5 H 0.088 0.912 6 C -0.180 4.180 7 N -0.550 5.550 8 Si 0.796 3.204 9 H -0.188 1.188 10 H -0.202 1.202 11 H -0.207 1.207 12 N -0.319 5.319 13 C 0.276 3.724 14 O -0.434 6.434 15 C 0.298 3.702 16 O -0.390 6.390 17 N -0.265 5.265 18 C 0.065 3.935 19 C -0.158 4.158 20 C -0.052 4.052 21 Cl -0.036 7.036 22 C -0.128 4.128 23 C -0.125 4.125 24 C -0.029 4.029 25 N -0.251 5.251 26 C -0.120 4.120 27 C -0.116 4.116 28 H 0.039 0.961 29 H 0.093 0.907 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.246 0.754 33 H 0.274 0.726 34 H 0.156 0.844 35 H 0.180 0.820 36 H 0.183 0.817 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.105 0.895 40 H 0.106 0.894 41 H 0.074 0.926 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.947 -2.594 25.577 26.180 hybrid contribution 0.399 -0.558 -0.562 0.887 sum 5.346 -3.152 25.015 25.774 Atomic orbital electron populations 1.21931 0.97396 0.99819 1.00359 1.18633 0.91734 0.92407 0.80618 0.96622 1.21524 1.33021 1.13761 0.90744 0.91173 1.25719 0.94729 0.95545 1.02044 1.70022 1.36580 1.23617 1.24792 0.85299 0.78166 0.78497 0.78416 1.18840 1.20235 1.20656 1.46261 1.61811 1.14788 1.09013 1.20050 0.80309 0.87019 0.85018 1.90721 1.51224 1.16279 1.85189 1.20295 0.78664 0.86552 0.84719 1.90712 1.48039 1.15416 1.84849 1.42963 1.57644 1.17964 1.07935 1.17649 0.94646 0.95190 0.85983 1.21157 0.97184 0.97254 1.00225 1.20815 0.96599 0.93015 0.94740 1.98376 1.61785 1.45829 1.97652 1.21217 0.98837 0.97360 0.95393 1.21624 0.96252 0.95182 0.99460 1.18673 0.97707 0.95977 0.90577 1.59479 1.06325 1.06911 1.52388 1.22556 0.99726 0.92812 0.96944 1.22484 0.90754 1.01683 0.96688 0.96057 0.90731 0.94148 0.92292 0.75411 0.72587 0.84363 0.82040 0.81707 0.91705 0.93032 0.89476 0.89434 0.92578 0.92997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.76 9.26 71.98 0.67 -6.09 16 2 C 0.27 13.77 2.56 44.25 0.11 13.89 16 3 H 0.02 0.93 7.58 -2.39 -0.02 0.91 16 4 C -0.55 -29.35 8.73 25.60 0.22 -29.13 16 5 H 0.07 3.58 7.74 -2.91 -0.02 3.55 16 6 C 0.02 1.09 5.30 84.66 0.45 1.53 16 7 N -0.91 -51.08 11.32 21.45 0.24 -50.83 16 8 Si 0.97 41.99 29.54 68.60 2.03 44.02 16 9 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 10 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 11 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 12 N -0.67 -29.14 5.06 -447.56 -2.27 -31.41 16 13 C 0.50 20.30 7.85 87.23 0.68 20.98 16 14 O -0.55 -25.13 16.15 -3.28 -0.05 -25.18 16 15 C 0.52 17.81 7.69 87.23 0.67 18.48 16 16 O -0.51 -18.69 13.64 -3.36 -0.05 -18.74 16 17 N -0.62 -17.87 5.26 -304.40 -1.60 -19.47 16 18 C 0.16 4.11 6.45 38.29 0.25 4.36 16 19 C -0.14 -3.62 8.50 22.40 0.19 -3.43 16 20 C -0.02 -0.52 6.32 22.32 0.14 -0.38 16 21 Cl -0.07 -1.37 28.95 -2.72 -0.08 -1.45 16 22 C -0.11 -1.66 9.82 22.31 0.22 -1.44 16 23 C -0.10 -1.47 8.66 22.38 0.19 -1.27 16 24 C 0.07 1.28 4.73 38.28 0.18 1.47 16 25 N -0.53 -8.80 4.32 -744.42 -3.22 -12.02 16 26 C 0.03 0.30 9.28 127.69 1.19 1.49 16 27 C 0.03 0.40 9.34 127.69 1.19 1.59 16 28 H 0.02 0.98 8.14 -2.38 -0.02 0.96 16 29 H 0.07 4.01 6.07 -2.39 -0.01 4.00 16 30 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 31 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 32 H 0.41 16.52 8.01 -92.71 -0.74 15.78 16 33 H 0.43 12.04 7.75 -92.71 -0.72 11.32 16 34 H 0.14 4.30 5.78 -2.91 -0.02 4.29 16 35 H 0.16 1.58 8.06 -2.91 -0.02 1.56 16 36 H 0.17 1.27 7.08 -2.91 -0.02 1.25 16 37 H 0.06 0.86 8.12 -2.39 -0.02 0.84 16 38 H 0.05 0.41 7.25 -2.39 -0.02 0.39 16 39 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.06 0.92 8.12 -2.39 -0.02 0.90 16 42 H 0.05 0.48 7.49 -2.38 -0.02 0.46 16 Total: -1.00 -63.42 369.97 0.99 -62.43 By element: Atomic # 1 Polarization: 30.98 SS G_CDS: -0.38 Total: 30.60 kcal Atomic # 6 Polarization: 15.68 SS G_CDS: 6.36 Total: 22.04 kcal Atomic # 7 Polarization: -106.89 SS G_CDS: -6.84 Total: -113.73 kcal Atomic # 8 Polarization: -43.82 SS G_CDS: -0.10 Total: -43.92 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Atomic # 17 Polarization: -1.37 SS G_CDS: -0.08 Total: -1.45 kcal Total: -63.42 0.99 -62.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122915714.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.126 kcal (2) G-P(sol) polarization free energy of solvation -63.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds