Wall clock time and date at job start Tue Mar 31 2020 23:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.46479 * 2 1 4 4 C 1.50696 * 109.47564 * 240.00130 * 2 1 3 5 5 H 1.07997 * 120.00207 * 240.00251 * 4 2 1 6 6 C 1.37884 * 120.00107 * 59.99414 * 4 2 1 7 7 N 1.31515 * 119.99535 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99950 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46889 * 180.02562 * 8 6 4 10 10 H 1.48499 * 109.47146 * 300.00247 * 8 6 4 11 11 H 1.48498 * 109.46879 * 60.00443 * 8 6 4 12 12 N 1.46496 * 109.47074 * 119.99427 * 2 1 3 13 13 C 1.34775 * 120.00699 * 275.00487 * 12 2 1 14 14 O 1.21366 * 119.99318 * 0.02562 * 13 12 2 15 15 C 1.49319 * 120.00234 * 179.97438 * 13 12 2 16 16 O 1.21391 * 119.99986 * 359.97438 * 15 13 12 17 17 N 1.34781 * 119.99957 * 180.02562 * 15 13 12 18 18 C 1.39892 * 119.99986 * 174.56026 * 17 15 13 19 19 C 1.38784 * 120.10162 * 335.55937 * 18 17 15 20 20 C 1.38178 * 120.01948 * 179.76401 * 19 18 17 21 21 C 1.38325 * 120.21667 * 0.51629 * 20 19 18 22 22 C 1.38296 * 120.19656 * 359.73815 * 21 20 19 23 23 Cl 1.73599 * 120.01058 * 179.97438 * 22 21 20 24 24 C 1.38825 * 119.98021 * 0.02562 * 22 21 20 25 25 N 1.39913 * 120.10798 * 180.02562 * 24 22 21 26 26 C 1.46904 * 110.99719 * 298.06452 * 25 24 22 27 27 C 1.46894 * 111.00263 * 62.01609 * 25 24 22 28 28 H 1.08998 * 109.47022 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.48014 * 300.00207 * 1 2 3 30 30 H 1.09000 * 109.47225 * 60.00447 * 1 2 3 31 31 H 0.97002 * 119.99734 * 179.97438 * 7 6 4 32 32 H 0.97004 * 119.99473 * 95.00170 * 12 2 1 33 33 H 0.97001 * 119.99699 * 354.55944 * 17 15 13 34 34 H 1.07997 * 119.98776 * 0.02562 * 19 18 17 35 35 H 1.07995 * 119.89283 * 180.25281 * 20 19 18 36 36 H 1.07998 * 119.90161 * 179.76097 * 21 20 19 37 37 H 1.08999 * 109.47300 * 55.37954 * 26 25 24 38 38 H 1.09002 * 109.46996 * 175.38176 * 26 25 24 39 39 H 1.09004 * 109.47082 * 295.37996 * 26 25 24 40 40 H 1.09002 * 109.47125 * 60.00517 * 27 25 24 41 41 H 1.09003 * 109.47123 * 180.02562 * 27 25 24 42 42 H 1.08998 * 109.47431 * 300.00285 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.6533 -1.5884 -1.1313 6 6 1.6993 -0.2393 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3215 -1.1203 -4.0079 9 1 1.8271 -0.4199 -5.2204 10 1 3.8065 -1.1208 -4.0081 11 1 1.8260 -2.5202 -4.0077 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8578 1.1593 2.4117 15 6 2.6441 -0.7222 3.5765 16 8 2.9320 -1.9002 3.5222 17 7 2.7723 -0.0499 4.7377 18 6 3.1284 -0.7327 5.9056 19 6 2.8662 -2.0902 6.0256 20 6 3.2231 -2.7640 7.1780 21 6 3.8325 -2.0876 8.2194 22 6 4.0932 -0.7338 8.1115 23 17 4.8576 0.1104 9.4217 24 6 3.7426 -0.0498 6.9555 25 7 4.0056 1.3198 6.8432 26 6 3.2782 2.0812 7.8675 27 6 5.4484 1.5864 6.9146 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3635 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 0.7094 1.1618 -3.4844 32 1 2.2490 -1.6317 1.1527 33 1 2.6176 0.9073 4.7635 34 1 2.3869 -2.6210 5.2164 35 1 3.0217 -3.8212 7.2676 36 1 4.1058 -2.6185 9.1194 37 1 3.5258 1.6908 8.8546 38 1 3.5635 3.1317 7.8102 39 1 2.2057 1.9862 7.6977 40 1 5.9548 1.0656 6.1019 41 1 5.6247 2.6583 6.8252 42 1 5.8363 1.2332 7.8700 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123015645.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:25 Heat of formation + Delta-G solvation = -24.864259 kcal Electronic energy + Delta-G solvation = -26907.261053 eV Core-core repulsion = 22914.149142 eV Total energy + Delta-G solvation = -3993.111911 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.13741 -39.77591 -38.20543 -36.95441 -36.68194 -35.36429 -34.55927 -32.43245 -30.30295 -29.88189 -29.11602 -27.83182 -25.39020 -25.06377 -24.70926 -22.70366 -21.58690 -20.77061 -19.63743 -18.75492 -17.79980 -16.96956 -16.58508 -16.07107 -15.80133 -15.58554 -15.21350 -15.12948 -14.93250 -14.60412 -14.27392 -14.14799 -13.98027 -13.48489 -13.28657 -12.72032 -12.58779 -12.49768 -12.36018 -11.95756 -11.90824 -11.81327 -11.48425 -11.34680 -11.20348 -11.07165 -11.01150 -10.81341 -10.55328 -10.38316 -10.28479 -9.18691 -9.12986 -8.94897 -8.70052 -8.63728 -8.30042 -8.14713 -6.18598 -4.28394 0.79176 0.82063 1.63825 1.84568 2.64195 3.24593 3.28696 3.29505 3.31762 3.51480 3.69129 4.03095 4.31868 4.59406 4.69242 4.94764 5.00252 5.05269 5.14352 5.15127 5.17313 5.24458 5.29272 5.40944 5.68348 5.71960 5.76521 5.83579 6.04876 6.16229 6.50525 6.54715 6.70279 6.82578 6.91213 7.00472 7.11234 7.20402 7.39099 7.60094 7.75182 7.86246 8.03579 8.40867 8.58765 8.82952 9.38642 10.87415 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.023596 B = 0.002406 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.351586 B =11634.602899 C =12106.973346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.262 3.738 3 H 0.055 0.945 4 C -0.538 4.538 5 H 0.064 0.936 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.905 3.095 9 H -0.285 1.285 10 H -0.275 1.275 11 H -0.275 1.275 12 N -0.667 5.667 13 C 0.495 3.505 14 O -0.531 6.531 15 C 0.508 3.492 16 O -0.505 6.505 17 N -0.633 5.633 18 C 0.191 3.809 19 C -0.124 4.124 20 C -0.087 4.087 21 C -0.126 4.126 22 C -0.046 4.046 23 Cl -0.059 7.059 24 C 0.064 3.936 25 N -0.505 5.505 26 C 0.008 3.992 27 C 0.012 3.988 28 H 0.030 0.970 29 H 0.017 0.983 30 H 0.094 0.906 31 H 0.266 0.734 32 H 0.402 0.598 33 H 0.432 0.568 34 H 0.158 0.842 35 H 0.138 0.862 36 H 0.133 0.867 37 H 0.049 0.951 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.508 -2.650 23.458 24.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.162 3.838 3 H 0.072 0.928 4 C -0.576 4.576 5 H 0.082 0.918 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.732 3.268 9 H -0.211 1.211 10 H -0.201 1.201 11 H -0.200 1.200 12 N -0.316 5.316 13 C 0.273 3.727 14 O -0.409 6.409 15 C 0.291 3.709 16 O -0.380 6.380 17 N -0.278 5.278 18 C 0.093 3.907 19 C -0.145 4.145 20 C -0.106 4.106 21 C -0.146 4.146 22 C -0.076 4.076 23 Cl -0.030 7.030 24 C -0.034 4.034 25 N -0.226 5.226 26 C -0.138 4.138 27 C -0.134 4.134 28 H 0.049 0.951 29 H 0.036 0.964 30 H 0.113 0.887 31 H 0.076 0.924 32 H 0.237 0.763 33 H 0.272 0.728 34 H 0.176 0.824 35 H 0.156 0.844 36 H 0.151 0.849 37 H 0.067 0.933 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.094 0.906 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.274 -2.205 22.811 23.516 hybrid contribution 0.744 -0.555 0.090 0.932 sum 6.017 -2.760 22.901 23.839 Atomic orbital electron populations 1.22102 0.97810 0.99574 1.01252 1.18977 0.91448 0.94150 0.79265 0.92760 1.21153 1.32899 1.13531 0.90029 0.91781 1.24876 0.94668 0.94925 0.99085 1.69883 1.35620 1.22314 1.24211 0.86449 0.79234 0.79611 0.81500 1.21079 1.20080 1.20037 1.46500 1.61356 1.14533 1.09245 1.19587 0.81334 0.87321 0.84436 1.90750 1.50554 1.15109 1.84504 1.21046 0.77812 0.87180 0.84816 1.90684 1.46696 1.15745 1.84838 1.43171 1.65376 1.13884 1.05418 1.17502 0.95902 0.91630 0.85671 1.21621 1.00614 0.92789 0.99439 1.21050 0.97228 1.00296 0.91979 1.20970 1.01378 0.91943 1.00313 1.21419 1.02426 0.93669 0.90056 1.98323 1.79659 1.77260 1.47732 1.18239 1.02026 0.90463 0.92651 1.59519 1.10215 1.03180 1.49649 1.22757 0.99022 0.98253 0.93788 1.22705 0.85994 1.02496 1.02220 0.95083 0.96432 0.88709 0.92370 0.76336 0.72844 0.82424 0.84410 0.84895 0.93260 0.90636 0.91192 0.91239 0.90626 0.93309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.58 9.26 37.16 0.34 -3.23 16 2 C 0.26 6.51 2.56 -69.09 -0.18 6.33 16 3 H 0.05 1.52 7.58 -51.93 -0.39 1.13 16 4 C -0.54 -14.04 8.73 -34.44 -0.30 -14.34 16 5 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -24.26 11.32 55.43 0.63 -23.63 16 8 Si 0.90 20.39 29.54 -169.99 -5.02 15.37 16 9 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 11 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 12 N -0.67 -14.02 5.06 -55.41 -0.28 -14.30 16 13 C 0.50 9.78 7.85 -11.65 -0.09 9.69 16 14 O -0.53 -11.67 16.15 5.48 0.09 -11.58 16 15 C 0.51 8.46 7.70 -11.64 -0.09 8.37 16 16 O -0.51 -8.68 13.61 5.46 0.07 -8.60 16 17 N -0.63 -9.08 5.26 -10.16 -0.05 -9.14 16 18 C 0.19 2.48 6.45 -83.51 -0.54 1.94 16 19 C -0.12 -1.50 8.72 -39.40 -0.34 -1.85 16 20 C -0.09 -0.82 10.04 -39.57 -0.40 -1.22 16 21 C -0.13 -1.15 9.82 -39.53 -0.39 -1.54 16 22 C -0.05 -0.48 5.94 -39.34 -0.23 -0.71 16 23 Cl -0.06 -0.52 22.71 -51.86 -1.18 -1.70 16 24 C 0.06 0.74 4.76 -83.48 -0.40 0.34 16 25 N -0.50 -5.47 4.31 -186.62 -0.80 -6.28 16 26 C 0.01 0.08 9.31 60.07 0.56 0.63 16 27 C 0.01 0.12 9.24 60.06 0.56 0.67 16 28 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 31 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 32 H 0.40 7.81 8.01 -40.82 -0.33 7.48 16 33 H 0.43 6.08 7.74 -40.82 -0.32 5.77 16 34 H 0.16 2.08 5.75 -52.49 -0.30 1.78 16 35 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 37 H 0.05 0.43 4.86 -51.93 -0.25 0.18 16 38 H 0.07 0.59 8.04 -51.93 -0.42 0.18 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.07 0.64 8.07 -51.93 -0.42 0.22 16 42 H 0.05 0.45 4.93 -51.93 -0.26 0.19 16 LS Contribution 360.74 15.07 5.44 5.44 Total: -1.00 -28.62 360.74 -7.78 -36.40 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -5.08 Total: 11.22 kcal Atomic # 6 Polarization: 8.40 SS G_CDS: -1.59 Total: 6.80 kcal Atomic # 7 Polarization: -52.84 SS G_CDS: -0.51 Total: -53.35 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: 0.16 Total: -20.18 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.18 Total: -1.70 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -28.62 -7.78 -36.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123015645.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.536 kcal (2) G-P(sol) polarization free energy of solvation -28.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds