Wall clock time and date at job start Tue Mar 31 2020 23:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.46479 * 2 1 4 4 C 1.50696 * 109.47564 * 240.00130 * 2 1 3 5 5 H 1.07997 * 120.00207 * 240.00251 * 4 2 1 6 6 C 1.37884 * 120.00107 * 59.99414 * 4 2 1 7 7 N 1.31515 * 119.99535 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99950 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46889 * 180.02562 * 8 6 4 10 10 H 1.48499 * 109.47146 * 300.00247 * 8 6 4 11 11 H 1.48498 * 109.46879 * 60.00443 * 8 6 4 12 12 N 1.46496 * 109.47074 * 119.99427 * 2 1 3 13 13 C 1.34775 * 120.00699 * 275.00487 * 12 2 1 14 14 O 1.21366 * 119.99318 * 0.02562 * 13 12 2 15 15 C 1.49319 * 120.00234 * 179.97438 * 13 12 2 16 16 O 1.21391 * 119.99986 * 359.97438 * 15 13 12 17 17 N 1.34781 * 119.99957 * 180.02562 * 15 13 12 18 18 C 1.39892 * 119.99986 * 174.56026 * 17 15 13 19 19 C 1.38784 * 120.10162 * 335.55937 * 18 17 15 20 20 C 1.38178 * 120.01948 * 179.76401 * 19 18 17 21 21 C 1.38325 * 120.21667 * 0.51629 * 20 19 18 22 22 C 1.38296 * 120.19656 * 359.73815 * 21 20 19 23 23 Cl 1.73599 * 120.01058 * 179.97438 * 22 21 20 24 24 C 1.38825 * 119.98021 * 0.02562 * 22 21 20 25 25 N 1.39913 * 120.10798 * 180.02562 * 24 22 21 26 26 C 1.46904 * 110.99719 * 298.06452 * 25 24 22 27 27 C 1.46894 * 111.00263 * 62.01609 * 25 24 22 28 28 H 1.08998 * 109.47022 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.48014 * 300.00207 * 1 2 3 30 30 H 1.09000 * 109.47225 * 60.00447 * 1 2 3 31 31 H 0.97002 * 119.99734 * 179.97438 * 7 6 4 32 32 H 0.97004 * 119.99473 * 95.00170 * 12 2 1 33 33 H 0.97001 * 119.99699 * 354.55944 * 17 15 13 34 34 H 1.07997 * 119.98776 * 0.02562 * 19 18 17 35 35 H 1.07995 * 119.89283 * 180.25281 * 20 19 18 36 36 H 1.07998 * 119.90161 * 179.76097 * 21 20 19 37 37 H 1.08999 * 109.47300 * 55.37954 * 26 25 24 38 38 H 1.09002 * 109.46996 * 175.38176 * 26 25 24 39 39 H 1.09004 * 109.47082 * 295.37996 * 26 25 24 40 40 H 1.09002 * 109.47125 * 60.00517 * 27 25 24 41 41 H 1.09003 * 109.47123 * 180.02562 * 27 25 24 42 42 H 1.08998 * 109.47431 * 300.00285 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.6533 -1.5884 -1.1313 6 6 1.6993 -0.2393 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3215 -1.1203 -4.0079 9 1 1.8271 -0.4199 -5.2204 10 1 3.8065 -1.1208 -4.0081 11 1 1.8260 -2.5202 -4.0077 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8578 1.1593 2.4117 15 6 2.6441 -0.7222 3.5765 16 8 2.9320 -1.9002 3.5222 17 7 2.7723 -0.0499 4.7377 18 6 3.1284 -0.7327 5.9056 19 6 2.8662 -2.0902 6.0256 20 6 3.2231 -2.7640 7.1780 21 6 3.8325 -2.0876 8.2194 22 6 4.0932 -0.7338 8.1115 23 17 4.8576 0.1104 9.4217 24 6 3.7426 -0.0498 6.9555 25 7 4.0056 1.3198 6.8432 26 6 3.2782 2.0812 7.8675 27 6 5.4484 1.5864 6.9146 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3635 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 0.7094 1.1618 -3.4844 32 1 2.2490 -1.6317 1.1527 33 1 2.6176 0.9073 4.7635 34 1 2.3869 -2.6210 5.2164 35 1 3.0217 -3.8212 7.2676 36 1 4.1058 -2.6185 9.1194 37 1 3.5258 1.6908 8.8546 38 1 3.5635 3.1317 7.8102 39 1 2.2057 1.9862 7.6977 40 1 5.9548 1.0656 6.1019 41 1 5.6247 2.6583 6.8252 42 1 5.8363 1.2332 7.8700 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123015645.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:24 Heat of formation + Delta-G solvation = -43.814498 kcal Electronic energy + Delta-G solvation = -26908.082797 eV Core-core repulsion = 22914.149142 eV Total energy + Delta-G solvation = -3993.933655 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.28815 -40.96055 -39.64464 -37.81100 -37.46248 -37.03193 -35.87602 -34.33167 -31.29677 -31.00498 -30.67183 -28.57510 -27.37845 -26.42407 -25.55161 -23.91207 -22.50949 -22.29023 -21.23264 -20.13984 -18.92213 -18.20186 -17.88469 -17.38358 -17.17787 -17.03607 -16.59794 -16.08775 -16.01452 -15.75800 -15.53865 -15.16459 -14.97985 -14.81449 -14.70654 -14.42937 -13.75257 -13.54387 -13.39636 -13.27382 -13.05910 -12.90513 -12.77808 -12.73688 -12.66021 -12.46841 -12.29869 -12.28223 -12.14153 -12.01416 -11.50917 -11.16924 -10.68089 -10.58821 -9.99127 -9.77856 -9.48392 -9.25395 -8.19791 -6.37252 -0.21336 -0.01319 0.55619 0.83930 1.32742 1.47188 1.48167 1.56374 2.08373 2.39277 2.54019 2.66576 2.76571 3.11082 3.44606 3.82843 3.93307 4.15227 4.22928 4.27912 4.40632 4.43059 4.58070 4.64356 4.70340 4.87450 4.89092 4.95427 4.98452 5.01908 5.03238 5.16184 5.30453 5.32027 5.43603 5.59443 5.62716 5.75520 5.79597 5.94864 6.03734 6.15410 6.48413 6.64587 6.74978 7.06519 7.35019 8.86219 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.023596 B = 0.002406 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.351586 B =11634.602899 C =12106.973346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.269 3.731 3 H 0.014 0.986 4 C -0.554 4.554 5 H 0.071 0.929 6 C 0.020 3.980 7 N -0.913 5.913 8 Si 0.972 3.028 9 H -0.284 1.284 10 H -0.272 1.272 11 H -0.265 1.265 12 N -0.668 5.668 13 C 0.495 3.505 14 O -0.556 6.556 15 C 0.519 3.481 16 O -0.512 6.512 17 N -0.621 5.621 18 C 0.161 3.839 19 C -0.135 4.135 20 C -0.080 4.080 21 C -0.114 4.114 22 C -0.054 4.054 23 Cl -0.045 7.045 24 C 0.063 3.937 25 N -0.520 5.520 26 C 0.009 3.991 27 C 0.014 3.986 28 H 0.041 0.959 29 H 0.020 0.980 30 H 0.073 0.927 31 H 0.268 0.732 32 H 0.411 0.589 33 H 0.431 0.569 34 H 0.145 0.855 35 H 0.168 0.832 36 H 0.162 0.838 37 H 0.054 0.946 38 H 0.087 0.913 39 H 0.065 0.935 40 H 0.056 0.944 41 H 0.087 0.913 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.453 -4.162 25.185 26.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.167 3.833 3 H 0.032 0.968 4 C -0.592 4.592 5 H 0.089 0.911 6 C -0.181 4.181 7 N -0.551 5.551 8 Si 0.796 3.204 9 H -0.209 1.209 10 H -0.197 1.197 11 H -0.190 1.190 12 N -0.318 5.318 13 C 0.275 3.725 14 O -0.436 6.436 15 C 0.301 3.699 16 O -0.387 6.387 17 N -0.266 5.266 18 C 0.064 3.936 19 C -0.156 4.156 20 C -0.098 4.098 21 C -0.133 4.133 22 C -0.083 4.083 23 Cl -0.016 7.016 24 C -0.035 4.035 25 N -0.241 5.241 26 C -0.137 4.137 27 C -0.133 4.133 28 H 0.060 0.940 29 H 0.039 0.961 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.247 0.753 33 H 0.271 0.729 34 H 0.162 0.838 35 H 0.185 0.815 36 H 0.179 0.821 37 H 0.072 0.928 38 H 0.105 0.895 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.106 0.894 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.233 -3.732 24.597 25.647 hybrid contribution 0.483 -0.041 -0.272 0.556 sum 6.716 -3.772 24.325 25.516 Atomic orbital electron populations 1.21929 0.97409 0.99879 1.00314 1.18610 0.91721 0.92353 0.80646 0.96801 1.21467 1.33137 1.13848 0.90714 0.91062 1.25730 0.94720 0.95540 1.02078 1.70015 1.36556 1.23589 1.24906 0.85402 0.78639 0.78727 0.77628 1.20888 1.19698 1.19006 1.46242 1.61840 1.14838 1.08884 1.20080 0.80326 0.87014 0.85070 1.90728 1.51364 1.16366 1.85123 1.20200 0.78442 0.86834 0.84412 1.90688 1.47528 1.15654 1.84836 1.42974 1.64636 1.13728 1.05276 1.17703 0.98090 0.92255 0.85516 1.21643 1.01120 0.92520 1.00273 1.21357 0.96062 1.01596 0.90809 1.21335 0.99574 0.91473 1.00949 1.21546 1.02418 0.94304 0.90080 1.98328 1.79332 1.77138 1.46775 1.18293 1.01650 0.90868 0.92667 1.59514 1.10881 1.03118 1.50603 1.22785 0.98634 0.98742 0.93521 1.22712 0.85372 1.03156 1.02023 0.94008 0.96110 0.90811 0.92301 0.75306 0.72901 0.83756 0.81470 0.82081 0.92773 0.89461 0.91594 0.92491 0.89448 0.92655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.72 9.26 71.98 0.67 -6.05 16 2 C 0.27 13.71 2.56 44.24 0.11 13.82 16 3 H 0.01 0.83 7.58 -2.38 -0.02 0.81 16 4 C -0.55 -29.15 8.73 25.60 0.22 -28.92 16 5 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 6 C 0.02 1.07 5.30 84.66 0.45 1.51 16 7 N -0.91 -51.04 11.32 21.45 0.24 -50.79 16 8 Si 0.97 41.62 29.54 68.60 2.03 43.65 16 9 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 10 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 11 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 12 N -0.67 -28.63 5.06 -447.57 -2.27 -30.89 16 13 C 0.50 20.03 7.85 87.23 0.68 20.72 16 14 O -0.56 -25.26 16.15 -3.30 -0.05 -25.31 16 15 C 0.52 17.46 7.70 87.23 0.67 18.13 16 16 O -0.51 -17.53 13.61 -3.38 -0.05 -17.58 16 17 N -0.62 -17.95 5.26 -304.40 -1.60 -19.56 16 18 C 0.16 4.08 6.45 38.29 0.25 4.33 16 19 C -0.13 -3.12 8.72 22.39 0.20 -2.92 16 20 C -0.08 -1.30 10.04 22.28 0.22 -1.07 16 21 C -0.11 -1.71 9.82 22.30 0.22 -1.50 16 22 C -0.05 -0.99 5.94 22.42 0.13 -0.86 16 23 Cl -0.04 -0.69 22.71 -2.72 -0.06 -0.75 16 24 C 0.06 1.38 4.76 38.29 0.18 1.57 16 25 N -0.52 -10.80 4.31 -744.33 -3.21 -14.01 16 26 C 0.01 0.16 9.31 127.69 1.19 1.35 16 27 C 0.01 0.25 9.24 127.69 1.18 1.43 16 28 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.07 3.95 6.07 -2.39 -0.01 3.94 16 31 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 32 H 0.41 16.06 8.01 -92.71 -0.74 15.32 16 33 H 0.43 12.38 7.74 -92.71 -0.72 11.66 16 34 H 0.14 3.73 5.75 -2.91 -0.02 3.72 16 35 H 0.17 1.69 8.06 -2.91 -0.02 1.67 16 36 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 37 H 0.05 0.85 4.86 -2.39 -0.01 0.84 16 38 H 0.09 1.24 8.04 -2.39 -0.02 1.23 16 39 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.06 1.17 8.14 -2.39 -0.02 1.16 16 41 H 0.09 1.36 8.07 -2.39 -0.02 1.34 16 42 H 0.06 0.92 4.93 -2.39 -0.01 0.91 16 Total: -1.00 -61.93 360.74 1.05 -60.88 By element: Atomic # 1 Polarization: 33.20 SS G_CDS: -0.37 Total: 32.83 kcal Atomic # 6 Polarization: 15.15 SS G_CDS: 6.38 Total: 21.52 kcal Atomic # 7 Polarization: -108.42 SS G_CDS: -6.83 Total: -115.25 kcal Atomic # 8 Polarization: -42.79 SS G_CDS: -0.10 Total: -42.89 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -0.06 Total: -0.75 kcal Total: -61.93 1.05 -60.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123015645.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.065 kcal (2) G-P(sol) polarization free energy of solvation -61.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds