Wall clock time and date at job start Tue Mar 31 2020 23:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47496 * 2 1 4 4 C 1.50699 * 109.47274 * 120.00337 * 2 1 3 5 5 H 1.07997 * 119.99799 * 92.57199 * 4 2 1 6 6 C 1.37869 * 120.00103 * 272.57392 * 4 2 1 7 7 N 1.31513 * 120.00359 * 174.17613 * 6 4 2 8 8 Si 1.86806 * 119.99891 * 354.17648 * 6 4 2 9 9 H 1.48505 * 109.47069 * 274.23013 * 8 6 4 10 10 H 1.48499 * 109.47046 * 34.23250 * 8 6 4 11 11 H 1.48500 * 109.47170 * 154.23311 * 8 6 4 12 12 N 1.46899 * 109.46919 * 240.00258 * 2 1 3 13 13 C 1.46898 * 111.00091 * 183.95517 * 12 2 1 14 14 C 1.46907 * 111.00061 * 59.99802 * 12 2 1 15 15 C 1.50695 * 109.47223 * 190.00161 * 14 12 2 16 16 O 1.21287 * 119.99931 * 359.97438 * 15 14 12 17 17 N 1.34777 * 120.00260 * 180.02562 * 15 14 12 18 18 N 1.40098 * 120.00360 * 179.97438 * 17 15 14 19 19 C 1.34772 * 120.00162 * 179.97438 * 18 17 15 20 20 O 1.21555 * 119.99807 * 0.02562 * 19 18 17 21 21 C 1.47854 * 120.00187 * 179.97438 * 19 18 17 22 22 C 1.39596 * 120.13317 * 359.72657 * 21 19 18 23 23 C 1.37947 * 119.87179 * 179.74443 * 22 21 19 24 24 C 1.38359 * 120.16386 * 0.53514 * 23 22 21 25 25 C 1.38450 * 120.27809 * 359.73982 * 24 23 22 26 26 Cl 1.73596 * 119.93958 * 180.02562 * 25 24 23 27 27 C 1.38107 * 120.11793 * 359.97438 * 25 24 23 28 28 H 1.09005 * 109.46890 * 292.84961 * 1 2 3 29 29 H 1.08999 * 109.47291 * 52.84383 * 1 2 3 30 30 H 1.08992 * 109.47477 * 172.85087 * 1 2 3 31 31 H 0.96998 * 120.00218 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.47033 * 60.00191 * 13 12 2 33 33 H 1.09004 * 109.47002 * 180.02562 * 13 12 2 34 34 H 1.08995 * 109.47111 * 299.99483 * 13 12 2 35 35 H 1.08992 * 109.47095 * 310.00324 * 14 12 2 36 36 H 1.09006 * 109.46864 * 70.00127 * 14 12 2 37 37 H 0.97004 * 119.99508 * 359.97438 * 17 15 14 38 38 H 0.97002 * 119.99577 * 359.97438 * 18 17 15 39 39 H 1.07988 * 120.06338 * 0.02562 * 22 21 19 40 40 H 1.08005 * 119.91210 * 180.27442 * 23 22 21 41 41 H 1.07999 * 119.85847 * 179.76386 * 24 23 22 42 42 H 1.07994 * 120.08053 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.2519 -1.7672 1.1919 6 6 2.2116 -0.0115 2.4052 7 7 2.5394 -0.6503 3.5070 8 14 1.9889 1.8431 2.4318 9 1 3.2596 2.5000 2.0326 10 1 0.9138 2.2262 1.4819 11 1 1.6166 2.2773 3.8022 12 7 2.0196 -0.6924 -1.1995 13 6 3.4850 -0.7945 -1.1871 14 6 1.5485 -0.0263 -2.4211 15 6 1.8577 -0.8910 -3.6160 16 8 2.4160 -1.9570 -3.4648 17 7 1.5148 -0.4792 -4.8526 18 7 1.8027 -1.2829 -5.9635 19 6 1.4593 -0.8714 -7.2001 20 8 0.9002 0.1973 -7.3516 21 6 1.7637 -1.7192 -8.3725 22 6 2.4118 -2.9438 -8.2024 23 6 2.6884 -3.7330 -9.2995 24 6 2.3351 -3.3085 -10.5681 25 6 1.6972 -2.0925 -10.7449 26 17 1.2572 -1.5688 -12.3404 27 6 1.4094 -1.2959 -9.6541 28 1 -0.3633 0.3991 0.9471 29 1 -0.3634 0.6207 -0.8190 30 1 -0.3634 -1.0196 -0.1279 31 1 2.6658 -0.1584 4.3334 32 1 3.8029 -1.3533 -0.3068 33 1 3.8208 -1.3109 -2.0865 34 1 3.9186 0.2051 -1.1593 35 1 0.4722 0.1325 -2.3564 36 1 2.0518 0.9347 -2.5281 37 1 1.0686 0.3736 -4.9735 38 1 2.2492 -2.1355 -5.8426 39 1 2.6920 -3.2749 -7.2134 40 1 3.1858 -4.6827 -9.1682 41 1 2.5574 -3.9286 -11.4239 42 1 0.9114 -0.3477 -9.7926 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161845580.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:23 Heat of formation + Delta-G solvation = -22.981281 kcal Electronic energy + Delta-G solvation = -25906.750350 eV Core-core repulsion = 21913.720092 eV Total energy + Delta-G solvation = -3993.030259 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.79306 -40.75751 -39.53514 -38.34311 -37.48234 -36.49604 -34.63278 -33.49620 -32.18921 -31.96015 -31.37825 -29.23049 -26.83718 -25.61857 -24.92570 -23.71715 -22.65094 -22.05224 -20.96636 -19.53913 -19.07882 -18.88787 -17.99008 -17.14923 -16.94611 -16.71393 -16.47653 -16.19278 -16.09971 -15.69627 -15.48506 -15.37571 -15.09097 -14.81723 -14.53242 -14.48288 -14.21645 -13.85264 -13.18119 -13.02792 -12.87327 -12.74118 -12.61474 -12.60515 -12.52404 -12.43317 -12.14417 -12.05354 -12.03884 -11.73112 -11.52155 -11.11461 -10.96119 -10.69804 -10.25496 -9.91815 -9.52062 -8.99901 -8.24947 -6.28317 -0.44273 0.06361 0.57734 1.06105 1.31074 1.36608 1.37938 1.48465 1.67603 2.36396 2.59291 2.71778 3.07563 3.26013 3.38249 3.71839 3.82166 3.89950 3.98589 4.21155 4.24620 4.38098 4.38946 4.50242 4.56720 4.75619 4.80193 4.85062 4.96055 4.96961 5.09802 5.15541 5.18314 5.29272 5.45376 5.48782 5.52527 5.64897 5.73530 6.04739 6.26189 6.40060 6.67367 6.71476 6.80235 7.21891 7.36885 8.91931 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.034430 B = 0.001831 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.047598 B =15287.711339 C =15797.925641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.184 3.816 3 H 0.008 0.992 4 C -0.501 4.501 5 H 0.031 0.969 6 C 0.012 3.988 7 N -0.948 5.948 8 Si 0.937 3.063 9 H -0.272 1.272 10 H -0.234 1.234 11 H -0.290 1.290 12 N -0.531 5.531 13 C 0.044 3.956 14 C 0.037 3.963 15 C 0.525 3.475 16 O -0.548 6.548 17 N -0.520 5.520 18 N -0.510 5.510 19 C 0.562 3.438 20 O -0.566 6.566 21 C -0.129 4.129 22 C -0.078 4.078 23 C -0.103 4.103 24 C -0.075 4.075 25 C -0.053 4.053 26 Cl -0.063 7.063 27 C -0.060 4.060 28 H 0.043 0.957 29 H 0.065 0.935 30 H 0.048 0.952 31 H 0.265 0.735 32 H 0.047 0.953 33 H 0.073 0.927 34 H 0.016 0.984 35 H 0.131 0.869 36 H 0.086 0.914 37 H 0.439 0.561 38 H 0.437 0.563 39 H 0.151 0.849 40 H 0.175 0.825 41 H 0.164 0.836 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.320 -1.758 -32.274 32.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.077 3.923 3 H 0.025 0.975 4 C -0.540 4.540 5 H 0.049 0.951 6 C -0.186 4.186 7 N -0.588 5.588 8 Si 0.761 3.239 9 H -0.198 1.198 10 H -0.156 1.156 11 H -0.216 1.216 12 N -0.257 5.257 13 C -0.105 4.105 14 C -0.095 4.095 15 C 0.312 3.688 16 O -0.423 6.423 17 N -0.271 5.271 18 N -0.258 5.258 19 C 0.351 3.649 20 O -0.445 6.445 21 C -0.134 4.134 22 C -0.097 4.097 23 C -0.121 4.121 24 C -0.094 4.094 25 C -0.080 4.080 26 Cl -0.034 7.034 27 C -0.080 4.080 28 H 0.062 0.938 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.092 0.908 34 H 0.035 0.965 35 H 0.148 0.852 36 H 0.104 0.896 37 H 0.283 0.717 38 H 0.282 0.718 39 H 0.169 0.831 40 H 0.193 0.807 41 H 0.182 0.818 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.511 -2.179 -32.182 32.291 hybrid contribution 0.369 1.456 0.644 1.634 sum -1.142 -0.723 -31.538 31.567 Atomic orbital electron populations 1.21979 0.95791 1.01073 1.00421 1.19655 0.93685 0.91671 0.87333 0.97491 1.21021 1.43152 0.95792 0.93994 0.95112 1.25844 0.94566 1.03301 0.94859 1.70058 1.50072 1.38016 1.00685 0.85912 0.80003 0.80087 0.77945 1.19778 1.15645 1.21580 1.61645 1.11004 1.52324 1.00682 1.22184 0.87307 0.99019 1.01942 1.22062 1.04776 0.95186 0.87476 1.21174 0.77835 0.87291 0.82514 1.90683 1.42457 1.24086 1.85097 1.44983 1.62821 1.21201 0.98108 1.44735 1.61225 1.21196 0.98674 1.18542 0.78496 0.86077 0.81770 1.90799 1.44009 1.24007 1.85662 1.19398 1.05698 0.96778 0.91490 1.21752 0.94577 0.91851 1.01485 1.21509 0.98962 1.01191 0.90390 1.21700 0.94361 0.93484 0.99833 1.20912 1.03722 0.96979 0.86357 1.98396 1.91704 1.90602 1.22724 1.21079 0.97113 0.99802 0.90020 0.93787 0.91628 0.93308 0.92620 0.93391 0.90830 0.96522 0.85174 0.89628 0.71711 0.71822 0.83096 0.80741 0.81810 0.84494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.14 8.43 71.98 0.61 -4.53 16 2 C 0.18 8.06 1.61 44.17 0.07 8.13 16 3 H 0.01 0.32 5.71 -2.39 -0.01 0.31 16 4 C -0.50 -27.89 7.57 25.60 0.19 -27.70 16 5 H 0.03 1.98 7.82 -2.91 -0.02 1.96 16 6 C 0.01 0.65 5.47 84.65 0.46 1.12 16 7 N -0.95 -58.52 13.96 21.44 0.30 -58.23 16 8 Si 0.94 42.20 26.37 68.60 1.81 44.01 16 9 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 10 H -0.23 -9.31 6.39 99.48 0.64 -8.68 16 11 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 12 N -0.53 -21.04 4.36 -906.05 -3.95 -24.99 16 13 C 0.04 1.76 8.90 127.69 1.14 2.90 16 14 C 0.04 1.04 5.26 85.55 0.45 1.50 16 15 C 0.52 14.40 7.64 87.66 0.67 15.07 16 16 O -0.55 -18.79 14.17 -3.05 -0.04 -18.84 16 17 N -0.52 -11.34 6.26 -173.53 -1.09 -12.42 16 18 N -0.51 -10.17 6.21 -175.60 -1.09 -11.26 16 19 C 0.56 11.64 7.89 86.79 0.68 12.33 16 20 O -0.57 -15.05 16.19 -3.89 -0.06 -15.12 16 21 C -0.13 -2.04 5.87 -20.09 -0.12 -2.16 16 22 C -0.08 -0.79 9.54 22.53 0.21 -0.58 16 23 C -0.10 -0.67 10.03 22.23 0.22 -0.45 16 24 C -0.08 -0.60 9.82 22.35 0.22 -0.38 16 25 C -0.05 -0.68 6.31 22.29 0.14 -0.54 16 26 Cl -0.06 -0.82 28.95 -2.72 -0.08 -0.90 16 27 C -0.06 -0.97 9.38 22.55 0.21 -0.76 16 28 H 0.04 1.74 7.24 -2.38 -0.02 1.73 16 29 H 0.06 1.91 6.59 -2.39 -0.02 1.90 16 30 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 32 H 0.05 2.26 6.83 -2.39 -0.02 2.24 16 33 H 0.07 2.78 5.82 -2.38 -0.01 2.76 16 34 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.13 3.08 5.98 -2.39 -0.01 3.07 16 36 H 0.09 2.02 8.12 -2.38 -0.02 2.00 16 37 H 0.44 8.21 8.00 -213.32 -1.71 6.50 16 38 H 0.44 7.59 6.03 -213.32 -1.29 6.30 16 39 H 0.15 1.04 6.40 -2.92 -0.02 1.02 16 40 H 0.18 0.07 8.06 -2.91 -0.02 0.05 16 41 H 0.16 0.53 8.06 -2.91 -0.02 0.50 16 42 H 0.14 2.45 7.65 -2.91 -0.02 2.42 16 Total: -1.00 -75.24 363.70 -1.01 -76.26 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: -1.97 Total: 17.54 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: 5.17 Total: 3.95 kcal Atomic # 7 Polarization: -101.07 SS G_CDS: -5.83 Total: -106.90 kcal Atomic # 8 Polarization: -33.85 SS G_CDS: -0.11 Total: -33.95 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 1.81 Total: 44.01 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -0.08 Total: -0.90 kcal Total: -75.24 -1.01 -76.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161845580.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.275 kcal (2) G-P(sol) polarization free energy of solvation -75.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds