Wall clock time and date at job start Tue Mar 31 2020 23:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46797 * 2 1 4 4 C 1.50699 * 109.46834 * 119.99810 * 2 1 3 5 5 H 1.08000 * 120.00074 * 120.00323 * 4 2 1 6 6 C 1.37883 * 120.00074 * 299.99740 * 4 2 1 7 7 N 1.31515 * 119.99858 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99925 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47285 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47359 * 120.00272 * 8 6 4 11 11 H 1.48499 * 109.47089 * 240.00082 * 8 6 4 12 12 N 1.46504 * 109.47064 * 239.99518 * 2 1 3 13 13 C 1.34775 * 119.99621 * 84.99916 * 12 2 1 14 14 O 1.21598 * 120.00054 * 0.02562 * 13 12 2 15 15 C 1.47510 * 119.99872 * 179.97438 * 13 12 2 16 16 C 1.39807 * 120.08246 * 359.73239 * 15 13 12 17 17 C 1.37606 * 119.93415 * 179.69304 * 16 15 13 18 18 C 1.39200 * 120.11093 * 0.60058 * 17 16 15 19 19 N 1.39436 * 119.91128 * 179.69835 * 18 17 16 20 20 C 1.34780 * 119.99771 * 213.52139 * 19 18 17 21 21 O 1.21580 * 119.99802 * 5.29973 * 20 19 18 22 22 N 1.34769 * 120.00213 * 185.30080 * 20 19 18 23 23 C 1.46499 * 120.00361 * 179.97438 * 22 20 19 24 24 C 1.46499 * 119.99823 * 0.02562 * 22 20 19 25 25 C 1.39041 * 120.17215 * 359.67211 * 18 17 16 26 26 C 1.37861 * 120.06058 * 0.02562 * 25 18 17 27 27 Cl 1.73601 * 120.05427 * 179.97438 * 26 25 18 28 28 H 1.08999 * 109.46976 * 300.00191 * 1 2 3 29 29 H 1.08992 * 109.47306 * 60.00524 * 1 2 3 30 30 H 1.09007 * 109.46715 * 180.02562 * 1 2 3 31 31 H 0.96999 * 119.99538 * 180.02562 * 7 6 4 32 32 H 0.96994 * 119.99731 * 264.99755 * 12 2 1 33 33 H 1.08000 * 120.03201 * 359.97296 * 16 15 13 34 34 H 1.07997 * 119.94378 * 180.29573 * 17 16 15 35 35 H 0.96995 * 120.00618 * 33.51884 * 19 18 17 36 36 H 1.08999 * 109.46822 * 60.00444 * 23 22 20 37 37 H 1.08997 * 109.47213 * 179.97438 * 23 22 20 38 38 H 1.09006 * 109.47193 * 300.00360 * 23 22 20 39 39 H 1.09006 * 109.47731 * 89.99653 * 24 22 20 40 40 H 1.08999 * 109.46927 * 209.99784 * 24 22 20 41 41 H 1.09004 * 109.47142 * 329.99810 * 24 22 20 42 42 H 1.07998 * 119.97125 * 180.02562 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9428 0.8298 2.6034 8 14 2.3224 -1.1194 4.0080 9 1 3.1472 -2.2862 3.6039 10 1 3.1471 -0.1856 4.8162 11 1 1.1677 -1.5864 4.8166 12 7 2.0184 -0.6907 -1.1961 13 6 2.1470 -0.0184 -2.3571 14 8 1.8583 1.1615 -2.4116 15 6 2.6393 -0.7137 -3.5614 16 6 2.9781 -2.0686 -3.4990 17 6 3.4309 -2.7158 -4.6258 18 6 3.5641 -2.0206 -5.8244 19 7 4.0293 -2.6790 -6.9621 20 6 4.7801 -2.0165 -7.8643 21 8 5.1325 -0.8746 -7.6406 22 7 5.1402 -2.6198 -9.0143 23 6 5.9558 -1.8995 -9.9953 24 6 4.7151 -3.9956 -9.2840 25 6 3.2338 -0.6716 -5.8902 26 6 2.7735 -0.0177 -4.7672 27 17 2.3618 1.6668 -4.8494 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0278 0.0005 31 1 0.7088 1.1614 3.4844 32 1 2.2491 -1.6318 -1.1525 33 1 2.8802 -2.6080 -2.5684 34 1 3.6882 -3.7636 -4.5789 35 1 3.8127 -3.6137 -7.1042 36 1 6.9040 -1.6139 -9.5397 37 1 6.1452 -2.5440 -10.8536 38 1 5.4255 -1.0050 -10.3220 39 1 3.7565 -3.9847 -9.8028 40 1 5.4599 -4.4904 -9.9073 41 1 4.6126 -4.5354 -8.3426 42 1 3.3379 -0.1355 -6.8219 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178539676.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:55 Heat of formation + Delta-G solvation = -45.690465 kcal Electronic energy + Delta-G solvation = -26435.617109 eV Core-core repulsion = 22441.602106 eV Total energy + Delta-G solvation = -3994.015003 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.01154 -40.90724 -39.35938 -37.50589 -36.69380 -36.63290 -35.91482 -34.30816 -32.09283 -31.57743 -30.17751 -28.79608 -27.32225 -27.09594 -24.75957 -24.13891 -22.73687 -21.50774 -21.03067 -19.73159 -19.39410 -18.55313 -17.82374 -17.32708 -17.01601 -16.59132 -16.49406 -15.93193 -15.85380 -15.65191 -15.25231 -15.08534 -14.77548 -14.47771 -14.29238 -14.15537 -13.90442 -13.59253 -13.51077 -13.48789 -12.98523 -12.92519 -12.83190 -12.77893 -12.70783 -12.54203 -12.25514 -12.14412 -11.96052 -11.54492 -11.33054 -11.05655 -10.61467 -10.39853 -9.92539 -9.86845 -9.71848 -9.19189 -8.14541 -6.31898 -0.36688 0.13697 1.11986 1.42714 1.46708 1.47656 1.59820 1.71579 2.10794 2.35880 2.59537 2.76081 2.77455 3.16206 3.66419 3.87536 3.99791 4.09332 4.17864 4.23481 4.35986 4.50746 4.59946 4.74578 4.76448 4.87943 4.92503 4.92986 4.96527 5.01108 5.11280 5.13421 5.18342 5.40706 5.47468 5.63735 5.69889 5.72909 5.74191 5.94817 6.12579 6.68232 6.75767 6.98159 7.29687 7.34954 7.56943 8.92172 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.020289 B = 0.002480 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.732889 B =11286.199323 C =12208.922832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.272 3.728 3 H -0.003 1.003 4 C -0.542 4.542 5 H 0.077 0.923 6 C 0.011 3.989 7 N -0.919 5.919 8 Si 0.974 3.026 9 H -0.256 1.256 10 H -0.287 1.287 11 H -0.279 1.279 12 N -0.697 5.697 13 C 0.534 3.466 14 O -0.573 6.573 15 C -0.161 4.161 16 C -0.044 4.044 17 C -0.129 4.129 18 C 0.203 3.797 19 N -0.665 5.665 20 C 0.692 3.308 21 O -0.613 6.613 22 N -0.628 5.628 23 C 0.101 3.899 24 C 0.066 3.934 25 C -0.137 4.137 26 C 0.017 3.983 27 Cl -0.057 7.057 28 H 0.066 0.934 29 H 0.010 0.990 30 H 0.043 0.957 31 H 0.264 0.736 32 H 0.404 0.596 33 H 0.166 0.834 34 H 0.188 0.812 35 H 0.430 0.570 36 H 0.049 0.951 37 H 0.116 0.884 38 H 0.048 0.952 39 H 0.071 0.929 40 H 0.102 0.898 41 H 0.083 0.917 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.045 -18.676 -25.934 32.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.169 3.831 3 H 0.015 0.985 4 C -0.581 4.581 5 H 0.095 0.905 6 C -0.189 4.189 7 N -0.557 5.557 8 Si 0.799 3.201 9 H -0.180 1.180 10 H -0.213 1.213 11 H -0.204 1.204 12 N -0.347 5.347 13 C 0.322 3.678 14 O -0.454 6.454 15 C -0.166 4.166 16 C -0.063 4.063 17 C -0.150 4.150 18 C 0.105 3.895 19 N -0.316 5.316 20 C 0.393 3.607 21 O -0.492 6.492 22 N -0.365 5.365 23 C -0.041 4.041 24 C -0.075 4.075 25 C -0.158 4.158 26 C -0.012 4.012 27 Cl -0.028 7.028 28 H 0.085 0.915 29 H 0.029 0.971 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.241 0.759 33 H 0.183 0.817 34 H 0.205 0.795 35 H 0.273 0.727 36 H 0.068 0.932 37 H 0.134 0.866 38 H 0.067 0.933 39 H 0.090 0.910 40 H 0.120 0.880 41 H 0.102 0.898 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 8.005 -16.822 -25.798 31.821 hybrid contribution -0.016 0.008 0.845 0.846 sum 7.989 -16.814 -24.953 31.132 Atomic orbital electron populations 1.21890 0.98250 0.99560 0.99455 1.18354 0.91125 0.91922 0.81702 0.98517 1.21568 1.32397 1.13538 0.90552 0.90495 1.25842 0.94938 0.95626 1.02448 1.70078 1.37128 1.24052 1.24475 0.85261 0.78043 0.78526 0.78268 1.17985 1.21308 1.20449 1.46138 1.65195 1.14120 1.09262 1.18597 0.78486 0.86674 0.84066 1.90803 1.52098 1.17082 1.85433 1.19886 1.08066 0.96163 0.92523 1.21409 0.93789 0.90715 1.00392 1.21220 1.02332 1.02811 0.88609 1.17501 0.93959 0.90850 0.87140 1.42438 1.53283 1.15625 1.20238 1.16164 0.79190 0.84221 0.81101 1.90986 1.60807 1.19009 1.78433 1.47103 1.55409 1.16782 1.17159 1.21686 0.93783 0.97436 0.91204 1.22185 1.02314 0.79560 1.03478 1.20867 1.01806 0.95352 0.97782 1.20910 0.99627 0.86366 0.94287 1.98393 1.91577 1.14467 1.98347 0.91520 0.97134 0.93818 0.92646 0.75948 0.81650 0.79513 0.72732 0.93199 0.86605 0.93344 0.91013 0.87971 0.89822 0.84635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.89 9.26 71.98 0.67 -6.23 16 2 C 0.27 14.45 2.56 44.25 0.11 14.57 16 3 H 0.00 -0.20 7.58 -2.39 -0.02 -0.21 16 4 C -0.54 -28.76 8.73 25.60 0.22 -28.53 16 5 H 0.08 3.75 7.74 -2.91 -0.02 3.73 16 6 C 0.01 0.61 5.30 84.66 0.45 1.05 16 7 N -0.92 -53.49 11.32 21.45 0.24 -53.24 16 8 Si 0.97 42.06 29.54 68.60 2.03 44.08 16 9 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 10 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 12 N -0.70 -29.88 5.02 -449.28 -2.25 -32.14 16 13 C 0.53 23.36 7.72 86.69 0.67 24.03 16 14 O -0.57 -30.02 13.61 -4.02 -0.05 -30.08 16 15 C -0.16 -5.49 5.88 -20.06 -0.12 -5.61 16 16 C -0.04 -1.00 9.53 22.50 0.21 -0.79 16 17 C -0.13 -2.13 9.94 22.35 0.22 -1.90 16 18 C 0.20 4.23 6.27 38.36 0.24 4.47 16 19 N -0.66 -9.54 5.20 -317.19 -1.65 -11.19 16 20 C 0.69 13.58 8.01 179.06 1.43 15.01 16 21 O -0.61 -18.57 14.02 -3.97 -0.06 -18.63 16 22 N -0.63 -7.14 3.27 -890.19 -2.91 -10.05 16 23 C 0.10 1.01 10.16 127.77 1.30 2.30 16 24 C 0.07 0.08 10.22 127.77 1.31 1.39 16 25 C -0.14 -3.98 8.41 22.37 0.19 -3.79 16 26 C 0.02 0.58 6.35 22.58 0.14 0.72 16 27 Cl -0.06 -2.24 26.01 -2.72 -0.07 -2.31 16 28 H 0.07 3.78 6.07 -2.39 -0.01 3.77 16 29 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.04 2.05 8.14 -2.38 -0.02 2.03 16 31 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 32 H 0.40 13.96 6.56 -92.71 -0.61 13.35 16 33 H 0.17 2.97 6.39 -2.91 -0.02 2.95 16 34 H 0.19 1.20 8.06 -2.91 -0.02 1.17 16 35 H 0.43 2.22 6.51 -92.71 -0.60 1.61 16 36 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.12 0.22 7.79 -2.39 -0.02 0.21 16 38 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 39 H 0.07 0.00 8.14 -2.38 -0.02 -0.02 16 40 H 0.10 -0.27 7.92 -2.39 -0.02 -0.28 16 41 H 0.08 -0.16 6.29 -2.38 -0.02 -0.18 16 42 H 0.14 4.28 6.41 -2.91 -0.02 4.26 16 Total: -1.00 -83.62 363.96 2.19 -81.42 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -0.13 Total: 15.44 kcal Atomic # 6 Polarization: 9.65 SS G_CDS: 7.05 Total: 16.70 kcal Atomic # 7 Polarization: -100.05 SS G_CDS: -6.57 Total: -106.62 kcal Atomic # 8 Polarization: -48.60 SS G_CDS: -0.11 Total: -48.71 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.08 kcal Atomic # 17 Polarization: -2.24 SS G_CDS: -0.07 Total: -2.31 kcal Total: -83.62 2.19 -81.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178539676.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.734 kcal (2) G-P(sol) polarization free energy of solvation -83.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds