Wall clock time and date at job start Tue Mar 31 2020 23:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46894 * 111.00073 * 2 1 4 4 C 1.39905 * 111.00097 * 236.04852 * 2 1 3 5 5 C 1.38702 * 120.09155 * 59.72329 * 4 2 1 6 6 C 1.38222 * 120.00741 * 179.74856 * 5 4 2 7 7 C 1.38408 * 120.19934 * 0.54927 * 6 5 4 8 8 Cl 1.73604 * 119.90930 * 179.72385 * 7 6 5 9 9 C 1.38283 * 120.18490 * 359.70784 * 7 6 5 10 10 C 1.38749 * 119.98691 * 0.02562 * 9 7 6 11 11 N 1.39886 * 120.10383 * 179.97438 * 10 9 7 12 12 C 1.34782 * 119.99441 * 23.68453 * 11 10 9 13 13 O 1.21389 * 120.00334 * 5.87375 * 12 11 10 14 14 C 1.49329 * 119.99600 * 185.87030 * 12 11 10 15 15 O 1.21359 * 119.99936 * 0.73225 * 14 12 11 16 16 N 1.34782 * 119.99933 * 180.73835 * 14 12 11 17 17 C 1.46501 * 119.99753 * 354.42443 * 16 14 12 18 18 C 1.46497 * 119.99962 * 174.42496 * 16 14 12 19 19 C 1.50701 * 109.47145 * 89.99833 * 18 16 14 20 20 H 1.08006 * 119.99868 * 359.97438 * 19 18 16 21 21 C 1.37873 * 120.00053 * 179.97438 * 19 18 16 22 22 N 1.31515 * 119.99828 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00204 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47162 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47303 * 119.99782 * 23 21 19 26 26 H 1.48501 * 109.47457 * 239.99986 * 23 21 19 27 27 H 1.09008 * 109.47061 * 183.95140 * 1 2 3 28 28 H 1.09004 * 109.46919 * 63.95501 * 1 2 3 29 29 H 1.08994 * 109.47559 * 303.95234 * 1 2 3 30 30 H 1.09004 * 109.46903 * 56.04706 * 3 2 1 31 31 H 1.09003 * 109.47575 * 176.04398 * 3 2 1 32 32 H 1.09000 * 109.47539 * 296.04464 * 3 2 1 33 33 H 1.07997 * 119.99813 * 359.97438 * 5 4 2 34 34 H 1.08003 * 119.89611 * 180.27510 * 6 5 4 35 35 H 1.08005 * 120.00847 * 180.02562 * 9 7 6 36 36 H 0.96995 * 120.00505 * 203.68652 * 11 10 9 37 37 H 1.09002 * 109.47313 * 83.82261 * 17 16 14 38 38 H 1.08994 * 109.46890 * 203.82380 * 17 16 14 39 39 H 1.09003 * 109.47061 * 323.82258 * 17 16 14 40 40 H 1.09000 * 109.47123 * 209.99997 * 18 16 14 41 41 H 1.09001 * 109.47120 * 329.99449 * 18 16 14 42 42 H 0.96997 * 119.99834 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9704 -0.7295 -1.0834 5 6 1.6548 -0.3534 -2.3807 6 6 2.1553 -1.0723 -3.4499 7 6 2.9627 -2.1749 -3.2307 8 17 3.5814 -3.0765 -4.5791 9 6 3.2782 -2.5601 -1.9406 10 6 2.7845 -1.8408 -0.8618 11 7 3.1016 -2.2287 0.4443 12 6 4.2139 -2.9523 0.6810 13 8 4.9953 -3.1767 -0.2204 14 6 4.4848 -3.4779 2.0522 15 8 3.6970 -3.2648 2.9504 16 7 5.6044 -4.1888 2.2924 17 6 6.4938 -4.5505 1.1858 18 6 5.9319 -4.5999 3.6598 19 6 5.3184 -5.9476 3.9398 20 1 4.7418 -6.4477 3.1756 21 6 5.4931 -6.5421 5.1714 22 7 6.1948 -5.9329 6.1020 23 14 4.7333 -8.2129 5.5182 24 1 3.9976 -8.6813 4.3162 25 1 5.8053 -9.1845 5.8528 26 1 3.7922 -8.1011 6.6615 27 1 -0.3633 -1.0253 0.0708 28 1 -0.3633 0.4512 -0.9233 29 1 -0.3634 0.5739 0.8524 30 1 1.5898 1.9162 0.8525 31 1 3.0828 1.3432 0.0709 32 1 1.7044 1.8723 -0.9233 33 1 1.0208 0.5032 -2.5554 34 1 1.9120 -0.7752 -4.4594 35 1 3.9089 -3.4207 -1.7729 36 1 2.5212 -1.9770 1.1795 37 1 7.1690 -3.7208 0.9763 38 1 7.0746 -5.4313 1.4596 39 1 5.8996 -4.7684 0.2984 40 1 7.0144 -4.6633 3.7708 41 1 5.5368 -3.8674 4.3638 42 1 6.3180 -6.3513 6.9684 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283445068.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:50:38 Heat of formation + Delta-G solvation = -36.027145 kcal Electronic energy + Delta-G solvation = -27075.793149 eV Core-core repulsion = 23082.197179 eV Total energy + Delta-G solvation = -3993.595970 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.35094 -40.95216 -39.50072 -38.10265 -37.30345 -36.80791 -35.73758 -34.65570 -31.38300 -30.59285 -30.01369 -28.49579 -27.78499 -26.41993 -25.59775 -24.65815 -22.92332 -22.22566 -20.89704 -19.25324 -18.74699 -18.57889 -17.94972 -17.35500 -17.22346 -16.90122 -16.56992 -16.23029 -16.06711 -15.76972 -15.45463 -15.07776 -14.75601 -14.74136 -14.40868 -14.18750 -13.87903 -13.68896 -13.63818 -13.42672 -13.24774 -13.10859 -12.93138 -12.78686 -12.64597 -12.62500 -12.43552 -12.25920 -12.21674 -11.95563 -11.72271 -11.50350 -10.65829 -10.40233 -9.81947 -9.65011 -9.56604 -9.20491 -8.25009 -6.39313 -0.23498 0.02783 0.57029 1.04420 1.28490 1.38655 1.40415 1.52886 2.06250 2.36616 2.51045 2.55100 2.78633 3.05739 3.24908 3.74749 4.00063 4.09909 4.17372 4.28103 4.41232 4.41528 4.49894 4.63977 4.65299 4.68411 4.75898 4.85822 4.94623 4.99191 5.02526 5.11671 5.13867 5.16053 5.19998 5.42439 5.52809 5.68906 5.87735 5.92056 5.98843 6.22422 6.35824 6.62231 6.68470 6.95923 7.31045 8.82947 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013387 B = 0.002991 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.063656 B = 9358.679170 C =10559.120367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.530 5.530 3 C 0.030 3.970 4 C 0.065 3.935 5 C -0.105 4.105 6 C -0.110 4.110 7 C -0.023 4.023 8 Cl -0.064 7.064 9 C -0.137 4.137 10 C 0.164 3.836 11 N -0.622 5.622 12 C 0.517 3.483 13 O -0.502 6.502 14 C 0.489 3.511 15 O -0.553 6.553 16 N -0.571 5.571 17 C 0.081 3.919 18 C 0.257 3.743 19 C -0.546 4.546 20 H 0.053 0.947 21 C 0.012 3.988 22 N -0.924 5.924 23 Si 0.968 3.032 24 H -0.269 1.269 25 H -0.269 1.269 26 H -0.279 1.279 27 H 0.063 0.937 28 H 0.051 0.949 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.164 0.836 34 H 0.162 0.838 35 H 0.143 0.857 36 H 0.432 0.568 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.091 0.909 40 H 0.035 0.965 41 H 0.012 0.988 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.532 14.335 -20.819 27.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.252 5.252 3 C -0.116 4.116 4 C -0.032 4.032 5 C -0.125 4.125 6 C -0.129 4.129 7 C -0.050 4.050 8 Cl -0.035 7.035 9 C -0.158 4.158 10 C 0.067 3.933 11 N -0.267 5.267 12 C 0.300 3.700 13 O -0.378 6.378 14 C 0.270 3.730 15 O -0.432 6.432 16 N -0.302 5.302 17 C -0.061 4.061 18 C 0.136 3.864 19 C -0.584 4.584 20 H 0.071 0.929 21 C -0.187 4.187 22 N -0.564 5.564 23 Si 0.793 3.207 24 H -0.194 1.194 25 H -0.195 1.195 26 H -0.204 1.204 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.105 0.895 30 H 0.106 0.894 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.182 0.818 34 H 0.179 0.821 35 H 0.160 0.840 36 H 0.272 0.728 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.110 0.890 40 H 0.053 0.947 41 H 0.030 0.970 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.059 13.925 -20.385 26.658 hybrid contribution -0.416 -0.597 0.314 0.792 sum -10.475 13.329 -20.071 26.272 Atomic orbital electron populations 1.22556 0.84024 1.02936 1.02528 1.59463 1.10127 1.15534 1.40108 1.22485 1.00383 0.86241 1.02482 1.18674 0.99884 0.93685 0.90917 1.21600 0.99870 1.00561 0.90501 1.21205 0.96801 0.93605 1.01336 1.20805 1.00060 0.96221 0.87962 1.98375 1.86465 1.74470 1.44235 1.21199 1.02776 1.01600 0.90257 1.17661 0.98248 0.94189 0.83181 1.43002 1.24127 1.50457 1.09110 1.20167 0.81720 0.79308 0.88836 1.90650 1.45765 1.55767 1.45583 1.20105 0.82977 0.81255 0.88621 1.90722 1.46014 1.59732 1.46755 1.48105 1.21671 1.49447 1.10961 1.22190 0.94229 1.01069 0.88584 1.19058 0.95866 0.94562 0.76885 1.21645 1.33667 1.03778 0.99343 0.92870 1.25803 0.95434 1.02036 0.95441 1.70037 1.40712 1.40187 1.05437 0.85352 0.78392 0.78820 0.78157 1.19377 1.19453 1.20423 0.91830 0.93035 0.89469 0.89422 0.92533 0.93059 0.81811 0.82090 0.83961 0.72802 0.91358 0.90895 0.89040 0.94667 0.96956 0.92197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.34 127.69 1.19 1.52 16 2 N -0.53 -9.24 4.31 -744.42 -3.21 -12.45 16 3 C 0.03 0.41 9.39 127.69 1.20 1.61 16 4 C 0.06 1.27 4.76 38.28 0.18 1.45 16 5 C -0.10 -1.50 8.57 22.38 0.19 -1.31 16 6 C -0.11 -1.68 9.82 22.31 0.22 -1.46 16 7 C -0.02 -0.49 6.32 22.32 0.14 -0.35 16 8 Cl -0.06 -1.31 28.95 -2.72 -0.08 -1.38 16 9 C -0.14 -3.56 8.51 22.40 0.19 -3.37 16 10 C 0.16 4.20 6.46 38.29 0.25 4.44 16 11 N -0.62 -18.52 5.26 -304.39 -1.60 -20.12 16 12 C 0.52 18.15 7.58 87.23 0.66 18.81 16 13 O -0.50 -17.38 10.37 -3.37 -0.03 -17.42 16 14 C 0.49 21.17 7.72 87.23 0.67 21.85 16 15 O -0.55 -27.25 16.12 -3.27 -0.05 -27.30 16 16 N -0.57 -25.58 2.86 -852.87 -2.44 -28.02 16 17 C 0.08 2.91 9.27 127.77 1.18 4.10 16 18 C 0.26 13.75 5.09 85.63 0.44 14.19 16 19 C -0.55 -31.31 9.39 25.60 0.24 -31.07 16 20 H 0.05 3.06 7.81 -2.91 -0.02 3.03 16 21 C 0.01 0.71 5.46 84.65 0.46 1.17 16 22 N -0.92 -54.81 13.29 21.45 0.28 -54.52 16 23 Si 0.97 44.55 29.54 68.60 2.03 46.58 16 24 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 25 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 26 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 27 H 0.06 0.92 8.14 -2.38 -0.02 0.91 16 28 H 0.05 0.46 7.11 -2.39 -0.02 0.44 16 29 H 0.09 0.92 8.12 -2.39 -0.02 0.90 16 30 H 0.09 1.00 8.12 -2.39 -0.02 0.98 16 31 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.05 0.50 7.36 -2.39 -0.02 0.49 16 33 H 0.16 1.33 7.02 -2.91 -0.02 1.31 16 34 H 0.16 1.58 8.06 -2.91 -0.02 1.56 16 35 H 0.14 4.27 5.71 -2.91 -0.02 4.25 16 36 H 0.43 12.75 7.73 -92.71 -0.72 12.03 16 37 H 0.07 2.20 8.13 -2.39 -0.02 2.18 16 38 H 0.07 2.57 8.02 -2.39 -0.02 2.55 16 39 H 0.09 3.13 5.83 -2.39 -0.01 3.11 16 40 H 0.04 1.90 8.07 -2.39 -0.02 1.88 16 41 H 0.01 0.74 7.51 -2.39 -0.02 0.72 16 42 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -68.50 368.89 2.47 -66.03 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: 0.35 Total: 17.02 kcal Atomic # 6 Polarization: 24.37 SS G_CDS: 7.22 Total: 31.59 kcal Atomic # 7 Polarization: -108.15 SS G_CDS: -6.96 Total: -115.11 kcal Atomic # 8 Polarization: -44.63 SS G_CDS: -0.09 Total: -44.72 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Atomic # 17 Polarization: -1.31 SS G_CDS: -0.08 Total: -1.38 kcal Total: -68.50 2.47 -66.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283445068.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.002 kcal (2) G-P(sol) polarization free energy of solvation -68.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds