Wall clock time and date at job start Tue Mar 31 2020 23:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46497 * 119.99852 * 2 1 4 4 C 1.34776 * 120.00052 * 180.02562 * 2 1 3 5 5 O 1.21585 * 120.00073 * 359.97438 * 4 2 1 6 6 N 1.34772 * 120.00031 * 180.02562 * 4 2 1 7 7 C 1.40036 * 120.00103 * 185.29212 * 6 4 2 8 8 C 1.39010 * 119.97906 * 213.23140 * 7 6 4 9 9 C 1.38167 * 120.24430 * 180.02562 * 8 7 6 10 10 C 1.38178 * 120.21020 * 0.02562 * 9 8 7 11 11 Cl 1.73594 * 120.02289 * 179.97438 * 10 9 8 12 12 C 1.39701 * 119.95558 * 359.97438 * 10 9 8 13 13 C 1.47783 * 120.12105 * 179.97438 * 12 10 9 14 14 O 1.21563 * 120.00057 * 0.02562 * 13 12 10 15 15 N 1.34773 * 119.99962 * 180.02562 * 13 12 10 16 16 C 1.46504 * 119.99908 * 179.97438 * 15 13 12 17 17 C 1.53003 * 109.46876 * 179.97438 * 16 15 13 18 18 C 1.50706 * 109.46937 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99655 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00053 * 180.02562 * 18 17 16 21 21 N 1.31509 * 120.00113 * 179.97438 * 20 18 17 22 22 Si 1.86796 * 119.99873 * 359.97438 * 20 18 17 23 23 H 1.48494 * 109.47412 * 90.00458 * 22 20 18 24 24 H 1.48503 * 109.47278 * 210.00266 * 22 20 18 25 25 H 1.48510 * 109.47295 * 330.00195 * 22 20 18 26 26 C 1.38531 * 119.97757 * 33.51139 * 7 6 4 27 27 H 1.08997 * 109.46972 * 269.99892 * 1 2 3 28 28 H 1.09000 * 109.47303 * 29.99732 * 1 2 3 29 29 H 1.09005 * 109.47101 * 150.00181 * 1 2 3 30 30 H 1.09004 * 109.47419 * 269.99882 * 3 2 1 31 31 H 1.09001 * 109.47678 * 30.00030 * 3 2 1 32 32 H 1.09003 * 109.46898 * 150.00678 * 3 2 1 33 33 H 0.96998 * 119.99984 * 5.28575 * 6 4 2 34 34 H 1.07998 * 119.87797 * 0.02562 * 8 7 6 35 35 H 1.08000 * 119.89343 * 179.97438 * 9 8 7 36 36 H 0.97004 * 120.00071 * 359.97438 * 15 13 12 37 37 H 1.08997 * 109.47135 * 300.00177 * 16 15 13 38 38 H 1.09004 * 109.47038 * 60.00325 * 16 15 13 39 39 H 1.08997 * 109.47528 * 300.00113 * 17 16 15 40 40 H 1.09004 * 109.46877 * 60.00404 * 17 16 15 41 41 H 0.96996 * 120.00322 * 179.97438 * 21 20 18 42 42 H 1.08003 * 120.10839 * 359.97438 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5310 -2.2202 -0.0005 6 7 3.4866 -1.1672 0.0000 7 6 4.1868 -2.3747 -0.1124 8 6 5.4062 -2.5335 0.5360 9 6 6.1019 -3.7223 0.4284 10 6 5.5905 -4.7615 -0.3251 11 17 6.4691 -6.2528 -0.4575 12 6 4.3659 -4.6112 -0.9803 13 6 3.8157 -5.7201 -1.7877 14 8 4.4288 -6.7655 -1.8821 15 7 2.6343 -5.5722 -2.4192 16 6 2.0892 -6.6713 -3.2200 17 6 0.7489 -6.2466 -3.8235 18 6 0.1879 -7.3774 -4.6467 19 1 0.7330 -8.3059 -4.7313 20 6 -1.0208 -7.2262 -5.2927 21 7 -1.5101 -8.2128 -6.0115 22 14 -1.9632 -5.6200 -5.1468 23 1 -1.5480 -4.7016 -6.2373 24 1 -3.4197 -5.8891 -5.2541 25 1 -1.6713 -4.9923 -3.8329 26 6 3.6668 -3.4081 -0.8744 27 1 -0.3633 0.0000 1.0276 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 2.3791 1.5834 -1.0277 31 1 1.6084 2.0284 0.5138 32 1 3.1499 1.1383 0.5137 33 1 3.9716 -0.3308 0.0781 34 1 5.8111 -1.7246 1.1260 35 1 7.0490 -3.8394 0.9342 36 1 2.1449 -4.7381 -2.3435 37 1 2.7866 -6.9183 -4.0204 38 1 1.9408 -7.5447 -2.5849 39 1 0.0517 -5.9999 -3.0228 40 1 0.8969 -5.3730 -4.4584 41 1 -2.3606 -8.1066 -6.4656 42 1 2.7215 -3.2844 -1.3820 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342618397.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:53:41 Heat of formation + Delta-G solvation = -22.964589 kcal Electronic energy + Delta-G solvation = -26627.485215 eV Core-core repulsion = 22634.455680 eV Total energy + Delta-G solvation = -3993.029535 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.21601 -39.81865 -38.33844 -36.52471 -35.94436 -34.98481 -34.85487 -32.83649 -31.69408 -29.92635 -29.79010 -28.34698 -26.32520 -25.35030 -23.83863 -22.73918 -20.85713 -20.45707 -20.36667 -18.85138 -17.99593 -17.01521 -16.87285 -16.47505 -16.31449 -15.66732 -15.39561 -15.03113 -14.71220 -14.45277 -14.37677 -14.10554 -13.89028 -13.61839 -13.28853 -13.16769 -13.10359 -12.81813 -12.62889 -12.50425 -12.33403 -12.21848 -11.72393 -11.42288 -11.14923 -11.06173 -10.56970 -10.33291 -10.32721 -10.11884 -9.89198 -9.33738 -9.30239 -9.21033 -9.13851 -8.58207 -8.45014 -8.27591 -6.05789 -4.05294 0.57338 0.91976 2.02574 2.22821 2.58806 3.00670 3.27352 3.29521 3.37022 3.40710 3.58267 3.75542 4.40423 4.43311 4.45387 4.54397 4.71161 4.78884 4.94653 4.97332 5.03594 5.12017 5.20173 5.27460 5.43332 5.51390 5.57469 5.72021 5.89866 5.93075 6.00229 6.20830 6.29056 6.33581 6.50544 6.64236 6.82062 7.21370 7.28892 7.31388 7.72580 7.95579 8.03532 8.49142 8.61197 8.98924 9.54795 11.07317 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.007483 B = 0.004078 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3740.811141 B = 6863.850034 C =10443.728853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.633 5.633 3 C 0.077 3.923 4 C 0.701 3.299 5 O -0.561 6.561 6 N -0.685 5.685 7 C 0.160 3.840 8 C -0.117 4.117 9 C -0.100 4.100 10 C -0.005 4.005 11 Cl -0.031 7.031 12 C -0.100 4.100 13 C 0.544 3.456 14 O -0.519 6.519 15 N -0.718 5.718 16 C 0.132 3.868 17 C -0.023 4.023 18 C -0.520 4.520 19 H 0.076 0.924 20 C 0.070 3.930 21 N -0.899 5.899 22 Si 0.880 3.120 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.265 1.265 26 C -0.079 4.079 27 H 0.055 0.945 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.407 0.593 34 H 0.137 0.863 35 H 0.143 0.857 36 H 0.396 0.604 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.023 0.977 40 H 0.017 0.983 41 H 0.264 0.736 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.284 24.649 16.481 32.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.371 5.371 3 C -0.067 4.067 4 C 0.402 3.598 5 O -0.436 6.436 6 N -0.335 5.335 7 C 0.065 3.935 8 C -0.139 4.139 9 C -0.119 4.119 10 C -0.034 4.034 11 Cl -0.001 7.001 12 C -0.104 4.104 13 C 0.329 3.671 14 O -0.396 6.396 15 N -0.369 5.369 16 C 0.010 3.990 17 C -0.061 4.061 18 C -0.559 4.559 19 H 0.094 0.906 20 C -0.132 4.132 21 N -0.538 5.538 22 Si 0.707 3.293 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.189 1.189 26 C -0.100 4.100 27 H 0.074 0.926 28 H 0.091 0.909 29 H 0.102 0.898 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.245 0.755 34 H 0.155 0.845 35 H 0.161 0.839 36 H 0.230 0.770 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.041 0.959 40 H 0.035 0.965 41 H 0.074 0.926 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 13.085 22.968 16.244 31.026 hybrid contribution -0.606 1.783 0.109 1.886 sum 12.479 24.751 16.353 32.183 Atomic orbital electron populations 1.21625 0.76856 1.03733 1.02096 1.46919 1.07536 1.04531 1.78087 1.21798 0.96878 0.85789 1.02223 1.15867 0.81329 0.84407 0.78153 1.91023 1.67134 1.29540 1.55886 1.42723 1.05180 1.08445 1.77124 1.17340 0.92648 0.86543 0.96976 1.20885 0.94936 0.98249 0.99790 1.20795 1.00730 0.91356 0.99009 1.20994 0.93244 0.89891 0.99266 1.98416 1.73926 1.31209 1.96567 1.19872 0.94725 0.95254 1.00567 1.17999 0.81861 0.87016 0.80177 1.90853 1.59020 1.27853 1.61915 1.46279 1.21099 1.19127 1.50346 1.21534 0.96122 0.87933 0.93430 1.19806 0.92002 0.97946 0.96319 1.20924 1.05459 1.00284 1.29208 0.90552 1.24980 0.97139 0.96479 0.94615 1.69901 1.19863 1.31855 1.32168 0.86780 0.79169 0.84293 0.79083 1.20275 1.21272 1.18926 1.21340 1.00282 0.91453 0.96925 0.92620 0.90921 0.89839 0.92072 0.90263 0.91622 0.75476 0.84549 0.83933 0.76970 0.91732 0.91700 0.95875 0.96508 0.92608 0.83381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.71 10.44 59.85 0.62 1.33 16 2 N -0.63 -4.79 3.27 -195.34 -0.64 -5.43 16 3 C 0.08 0.24 10.25 59.85 0.61 0.85 16 4 C 0.70 7.56 8.01 -86.92 -0.70 6.86 16 5 O -0.56 -8.55 13.62 5.29 0.07 -8.48 16 6 N -0.69 -5.59 5.22 -14.25 -0.07 -5.67 16 7 C 0.16 1.66 6.27 -83.71 -0.53 1.13 16 8 C -0.12 -0.96 9.95 -39.32 -0.39 -1.35 16 9 C -0.10 -0.96 9.81 -39.63 -0.39 -1.34 16 10 C -0.01 -0.07 6.35 -39.06 -0.25 -0.32 16 11 Cl -0.03 -0.45 26.01 -51.86 -1.35 -1.80 16 12 C -0.10 -1.51 5.87 -104.96 -0.62 -2.13 16 13 C 0.54 10.11 7.76 -12.36 -0.10 10.02 16 14 O -0.52 -10.99 13.96 5.31 0.07 -10.92 16 15 N -0.72 -13.45 5.51 -61.27 -0.34 -13.78 16 16 C 0.13 2.87 5.61 -4.04 -0.02 2.85 16 17 C -0.02 -0.56 4.16 -27.88 -0.12 -0.67 16 18 C -0.52 -15.04 9.66 -34.44 -0.33 -15.38 16 19 H 0.08 2.38 7.99 -52.49 -0.42 1.96 16 20 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 21 N -0.90 -27.94 13.96 55.43 0.77 -27.16 16 22 Si 0.88 21.70 27.47 -169.99 -4.67 17.03 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 26 C -0.08 -1.06 8.14 -38.98 -0.32 -1.37 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.33 8.07 -51.93 -0.42 -0.09 16 29 H 0.08 0.79 7.42 -51.93 -0.39 0.41 16 30 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.08 0.14 8.07 -51.93 -0.42 -0.28 16 32 H 0.07 0.10 6.29 -51.93 -0.33 -0.23 16 33 H 0.41 1.77 6.51 -40.82 -0.27 1.50 16 34 H 0.14 0.62 8.06 -52.49 -0.42 0.19 16 35 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 36 H 0.40 6.72 6.50 -40.82 -0.27 6.46 16 37 H 0.06 1.45 8.14 -51.93 -0.42 1.03 16 38 H 0.06 1.48 8.14 -51.93 -0.42 1.06 16 39 H 0.02 0.56 7.20 -51.93 -0.37 0.18 16 40 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 41 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 42 H 0.15 2.15 4.77 -52.48 -0.25 1.89 16 LS Contribution 364.91 15.07 5.50 5.50 Total: -1.00 -36.94 364.91 -8.48 -45.42 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -5.22 Total: 2.85 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: -2.61 Total: 2.44 kcal Atomic # 7 Polarization: -51.77 SS G_CDS: -0.28 Total: -52.04 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: 0.15 Total: -19.40 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -1.35 Total: -1.80 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.94 -8.48 -45.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342618397.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.456 kcal (2) G-P(sol) polarization free energy of solvation -36.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds