Wall clock time and date at job start Tue Mar 31 2020 23:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.46971 * 2 1 4 4 C 1.46501 * 119.99699 * 90.00551 * 3 2 1 5 5 C 1.50702 * 109.47074 * 270.00204 * 4 3 2 6 6 C 1.38270 * 119.99101 * 270.27622 * 5 4 3 7 7 C 1.38215 * 120.02537 * 180.27948 * 6 5 4 8 8 C 1.38238 * 120.01126 * 359.44038 * 7 6 5 9 9 C 1.38325 * 119.98878 * 0.28199 * 8 7 6 10 10 Cl 1.73606 * 120.01335 * 179.97438 * 9 8 7 11 11 C 1.38193 * 119.99765 * 90.00024 * 5 4 3 12 12 C 1.34772 * 120.00532 * 270.00169 * 3 2 1 13 13 O 1.21582 * 120.00452 * 179.97438 * 12 3 2 14 14 N 1.34777 * 119.99537 * 0.02562 * 12 3 2 15 15 C 1.46509 * 119.99845 * 179.97438 * 14 12 3 16 16 C 1.50700 * 109.47186 * 180.02562 * 15 14 12 17 17 O 1.21294 * 119.99759 * 359.97438 * 16 15 14 18 18 N 1.34772 * 119.99998 * 180.02562 * 16 15 14 19 19 C 1.37099 * 120.00174 * 179.97438 * 18 16 15 20 20 H 1.07997 * 119.99590 * 0.02562 * 19 18 16 21 21 C 1.38950 * 120.00122 * 179.97438 * 19 18 16 22 22 N 1.31414 * 119.99762 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 119.99957 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46983 * 90.00164 * 23 21 19 25 25 H 1.48494 * 109.47352 * 210.00103 * 23 21 19 26 26 H 1.48499 * 109.47357 * 330.00748 * 23 21 19 27 27 H 1.09006 * 109.46768 * 299.99460 * 1 2 3 28 28 H 1.09001 * 109.47584 * 59.99432 * 1 2 3 29 29 H 1.09003 * 109.47170 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46768 * 240.00540 * 2 1 3 31 31 H 1.09001 * 109.47584 * 120.00567 * 2 1 3 32 32 H 1.08998 * 109.47483 * 149.99803 * 4 3 2 33 33 H 1.09000 * 109.47209 * 29.99624 * 4 3 2 34 34 H 1.07997 * 119.98420 * 0.02562 * 6 5 4 35 35 H 1.08002 * 119.99636 * 179.72646 * 7 6 5 36 36 H 1.07999 * 120.00577 * 180.25936 * 8 7 6 37 37 H 1.08003 * 120.00423 * 0.02562 * 11 5 4 38 38 H 0.97003 * 120.00506 * 359.97438 * 14 12 3 39 39 H 1.09007 * 109.46744 * 300.00191 * 15 14 12 40 40 H 1.09000 * 109.46851 * 60.00157 * 15 14 12 41 41 H 0.96996 * 120.00010 * 359.97438 * 18 16 15 42 42 H 0.97004 * 119.99750 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 1.2688 5 6 1.0067 2.7821 1.7040 6 6 0.7736 4.0838 1.3001 7 6 -0.3752 4.7379 1.7036 8 6 -1.2974 4.0870 2.5017 9 6 -1.0675 2.7828 2.9013 10 17 -2.2249 1.9650 3.9041 11 6 0.0855 2.1305 2.5019 12 6 2.2429 2.0167 -1.1671 13 8 2.6477 3.1632 -1.1671 14 7 2.0178 1.3815 -2.3343 15 6 2.2614 2.0725 -3.6031 16 6 1.9339 1.1496 -4.7486 17 8 1.5365 0.0252 -4.5269 18 7 2.0834 1.5733 -6.0192 19 6 1.7860 0.7336 -7.0613 20 1 1.4314 -0.2673 -6.8640 21 6 1.9397 1.1706 -8.3713 22 7 2.3707 2.3886 -8.6113 23 14 1.5351 0.0262 -9.7912 24 1 0.1076 0.1891 -10.1669 25 1 2.3945 0.3591 -10.9556 26 1 1.7814 -1.3792 -9.3798 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 3.0644 2.7985 1.1385 33 1 2.5506 1.3451 2.0284 34 1 1.4914 4.5910 0.6726 35 1 -0.5547 5.7561 1.3915 36 1 -2.1970 4.5968 2.8134 37 1 0.2658 1.1123 2.8139 38 1 1.6944 0.4670 -2.3344 39 1 1.6311 2.9600 -3.6603 40 1 3.3093 2.3666 -3.6612 41 1 2.4015 2.4723 -6.1964 42 1 2.4783 2.6936 -9.5259 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358302865.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:18 Heat of formation + Delta-G solvation = -45.811853 kcal Electronic energy + Delta-G solvation = -26589.909889 eV Core-core repulsion = 22595.889623 eV Total energy + Delta-G solvation = -3994.020267 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.47480 -39.33195 -38.22524 -36.76628 -35.96738 -34.53713 -33.77063 -32.22423 -31.36992 -31.09641 -30.22449 -27.94624 -25.95864 -24.37999 -23.35088 -22.90333 -21.84013 -19.72423 -19.61401 -18.34137 -17.80424 -17.36843 -16.35836 -15.93558 -15.79347 -15.47123 -15.35678 -14.71437 -14.46535 -14.40259 -14.04885 -14.01847 -13.74616 -13.68400 -13.42668 -13.33597 -12.92290 -12.45466 -12.21283 -11.91156 -11.89477 -11.78775 -11.64686 -11.62119 -11.45962 -11.17236 -11.13375 -11.10763 -10.46545 -10.32425 -10.01388 -9.63978 -9.18098 -8.96769 -8.90160 -8.62967 -8.52573 -8.10355 -6.51847 -3.93807 0.91159 0.98950 1.86893 2.69839 3.11200 3.21682 3.26834 3.33581 3.47065 3.74692 4.00572 4.16503 4.46263 4.53723 4.77550 4.80905 4.89420 4.96014 5.07249 5.13561 5.16990 5.19000 5.28563 5.46400 5.52041 5.64132 5.66524 5.75068 5.89550 5.93606 5.99928 6.07558 6.14347 6.15902 6.29292 6.44876 6.57153 6.75212 6.99194 7.45617 7.92049 8.13477 8.44808 8.75373 9.04313 9.39187 9.87032 10.65070 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.019174 B = 0.002209 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.994325 B =12670.244897 C =12859.456412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.105 3.895 3 N -0.626 5.626 4 C 0.174 3.826 5 C -0.092 4.092 6 C -0.086 4.086 7 C -0.111 4.111 8 C -0.110 4.110 9 C -0.041 4.041 10 Cl -0.077 7.077 11 C -0.097 4.097 12 C 0.709 3.291 13 O -0.594 6.594 14 N -0.723 5.723 15 C 0.127 3.873 16 C 0.429 3.571 17 O -0.598 6.598 18 N -0.549 5.549 19 C -0.304 4.304 20 H 0.105 0.895 21 C 0.025 3.975 22 N -0.895 5.895 23 Si 0.933 3.067 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.269 1.269 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.138 0.862 35 H 0.131 0.869 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.407 0.593 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.396 0.604 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.600 1.463 23.450 23.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.018 4.018 3 N -0.363 5.363 4 C 0.051 3.949 5 C -0.094 4.094 6 C -0.105 4.105 7 C -0.129 4.129 8 C -0.129 4.129 9 C -0.067 4.067 10 Cl -0.048 7.048 11 C -0.116 4.116 12 C 0.410 3.590 13 O -0.473 6.473 14 N -0.382 5.382 15 C -0.001 4.001 16 C 0.214 3.786 17 O -0.485 6.485 18 N -0.184 5.184 19 C -0.434 4.434 20 H 0.123 0.877 21 C -0.177 4.177 22 N -0.535 5.535 23 Si 0.760 3.240 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.193 1.193 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.115 0.885 33 H 0.104 0.896 34 H 0.156 0.844 35 H 0.149 0.851 36 H 0.148 0.852 37 H 0.149 0.851 38 H 0.247 0.753 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.230 0.770 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.604 1.553 23.426 23.752 hybrid contribution -0.467 -0.454 -0.856 1.076 sum -4.071 1.099 22.570 22.960 Atomic orbital electron populations 1.22349 0.95766 1.02464 1.03142 1.21566 0.94761 0.82240 1.03260 1.47116 1.70754 1.14107 1.04325 1.20190 0.93967 0.96495 0.84285 1.20305 0.97319 0.94662 0.97074 1.21408 0.97425 0.94290 0.97367 1.21175 0.93901 1.00368 0.97450 1.21069 1.00191 0.93025 0.98579 1.20869 0.92755 0.94058 0.99029 1.98369 1.59189 1.79135 1.68101 1.20901 0.92508 0.99900 0.98299 1.15776 0.78586 0.84348 0.80299 1.90867 1.53532 1.16571 1.86368 1.44957 1.71019 1.18543 1.03643 1.20793 1.02083 0.95014 0.82226 1.19763 0.85903 0.88744 0.84165 1.90488 1.52836 1.21045 1.84111 1.41785 1.56799 1.15864 1.03937 1.19720 1.41902 0.97737 0.84029 0.87702 1.25324 0.96800 0.96708 0.98906 1.69617 1.45236 1.16651 1.21978 0.85816 0.78358 0.80069 0.79805 1.20274 1.20797 1.19328 0.91889 0.92067 0.91472 0.90174 0.90189 0.88455 0.89593 0.84420 0.85070 0.85189 0.85096 0.75337 0.90086 0.90014 0.77026 0.91594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.81 10.24 37.16 0.38 -1.43 16 2 C 0.11 1.03 5.94 -4.04 -0.02 1.01 16 3 N -0.63 -7.45 2.46 -180.80 -0.44 -7.90 16 4 C 0.17 1.70 5.57 -5.19 -0.03 1.67 16 5 C -0.09 -0.93 5.39 -104.63 -0.56 -1.49 16 6 C -0.09 -0.94 9.70 -39.58 -0.38 -1.32 16 7 C -0.11 -1.06 10.05 -39.59 -0.40 -1.46 16 8 C -0.11 -1.02 9.83 -39.55 -0.39 -1.41 16 9 C -0.04 -0.39 6.32 -39.50 -0.25 -0.64 16 10 Cl -0.08 -0.70 28.96 -51.86 -1.50 -2.20 16 11 C -0.10 -0.90 7.32 -39.55 -0.29 -1.19 16 12 C 0.71 11.19 8.28 -86.92 -0.72 10.47 16 13 O -0.59 -10.78 15.42 5.29 0.08 -10.70 16 14 N -0.72 -12.17 5.39 -66.41 -0.36 -12.53 16 15 C 0.13 2.35 6.15 -5.19 -0.03 2.32 16 16 C 0.43 9.78 7.85 -10.99 -0.09 9.69 16 17 O -0.60 -15.17 15.24 5.54 0.08 -15.08 16 18 N -0.55 -13.55 5.29 -10.96 -0.06 -13.61 16 19 C -0.30 -8.23 9.68 -14.93 -0.14 -8.38 16 20 H 0.11 2.95 7.16 -52.49 -0.38 2.58 16 21 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 22 N -0.89 -23.81 13.05 55.50 0.72 -23.09 16 23 Si 0.93 20.47 29.55 -169.99 -5.02 15.44 16 24 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 25 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 26 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 27 H 0.06 0.62 5.26 -51.93 -0.27 0.34 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.86 6.36 -51.93 -0.33 0.53 16 31 H 0.08 0.57 7.89 -51.93 -0.41 0.16 16 32 H 0.10 1.04 7.37 -51.93 -0.38 0.66 16 33 H 0.09 0.60 7.84 -51.93 -0.41 0.19 16 34 H 0.14 1.64 7.55 -52.49 -0.40 1.24 16 35 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 37 H 0.13 1.01 7.73 -52.48 -0.41 0.61 16 38 H 0.41 6.80 5.17 -40.82 -0.21 6.59 16 39 H 0.08 1.45 8.14 -51.92 -0.42 1.03 16 40 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 41 H 0.40 9.41 7.90 -40.82 -0.32 9.09 16 42 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 371.72 15.07 5.60 5.60 Total: -1.00 -31.04 371.72 -9.10 -40.14 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: -5.19 Total: 15.49 kcal Atomic # 6 Polarization: 11.44 SS G_CDS: -3.02 Total: 8.42 kcal Atomic # 7 Polarization: -56.99 SS G_CDS: -0.14 Total: -57.12 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: 0.17 Total: -25.78 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.50 Total: -2.20 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.04 -9.10 -40.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358302865.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.667 kcal (2) G-P(sol) polarization free energy of solvation -31.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds