Wall clock time and date at job start Tue Mar 31 2020 22:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.46993 * 2 1 4 4 C 1.50701 * 109.47090 * 240.00197 * 2 1 3 5 5 C 1.38233 * 120.00991 * 343.48282 * 4 2 1 6 6 C 1.38221 * 120.01385 * 180.02562 * 5 4 2 7 7 C 1.38258 * 120.02676 * 0.02562 * 6 5 4 8 8 C 1.38194 * 120.01237 * 359.68578 * 7 6 5 9 9 C 1.38331 * 120.00338 * 163.49891 * 4 2 1 10 10 Cl 1.73595 * 120.01609 * 359.97438 * 9 4 2 11 11 N 1.46497 * 109.47267 * 120.00019 * 2 1 3 12 12 C 1.46505 * 119.99912 * 65.57814 * 11 2 1 13 13 C 1.34775 * 120.00305 * 245.58275 * 11 2 1 14 14 O 1.21585 * 119.99566 * 359.97438 * 13 11 2 15 15 N 1.34774 * 119.99860 * 180.02562 * 13 11 2 16 16 C 1.46506 * 119.99847 * 179.97438 * 15 13 11 17 17 C 1.50697 * 109.47097 * 179.97438 * 16 15 13 18 18 O 1.21294 * 120.00157 * 0.02562 * 17 16 15 19 19 N 1.34779 * 119.99878 * 179.97438 * 17 16 15 20 20 C 1.37095 * 120.00112 * 180.02562 * 19 17 16 21 21 H 1.08004 * 119.99890 * 0.02562 * 20 19 17 22 22 C 1.38947 * 120.00374 * 180.02562 * 20 19 17 23 23 N 1.31415 * 119.99804 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00359 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47219 * 59.99606 * 24 22 20 26 26 H 1.48503 * 109.47158 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.46994 * 299.99875 * 24 22 20 28 28 H 1.08997 * 109.46882 * 59.99968 * 1 2 3 29 29 H 1.09003 * 109.46887 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47053 * 299.99669 * 1 2 3 31 31 H 1.08004 * 119.99226 * 359.97438 * 5 4 2 32 32 H 1.07997 * 119.98287 * 179.97438 * 6 5 4 33 33 H 1.08004 * 119.99109 * 179.97438 * 7 6 5 34 34 H 1.08000 * 120.00477 * 180.30056 * 8 7 6 35 35 H 1.09004 * 109.46746 * 95.24545 * 12 11 2 36 36 H 1.08994 * 109.47637 * 215.24855 * 12 11 2 37 37 H 1.09004 * 109.47094 * 335.24976 * 12 11 2 38 38 H 0.96999 * 120.00082 * 359.97438 * 15 13 11 39 39 H 1.09000 * 109.47029 * 300.00024 * 16 15 13 40 40 H 1.09003 * 109.46834 * 60.00030 * 16 15 13 41 41 H 0.96996 * 120.00236 * 0.02562 * 19 17 16 42 42 H 0.96997 * 119.99716 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 6 1.1809 -1.5222 -1.9562 6 6 1.6416 -2.1742 -3.0845 7 6 2.9545 -2.0153 -3.4877 8 6 3.8052 -1.1992 -2.7665 9 6 3.3459 -0.5503 -1.6338 10 17 4.4158 0.4692 -0.7233 11 7 2.0184 -0.6906 1.1961 12 6 1.7680 -2.1238 1.3680 13 6 2.6980 -0.0075 2.1385 14 8 2.9061 1.1819 1.9956 15 7 3.1476 -0.6430 3.2386 16 6 3.8868 0.0994 4.2627 17 6 4.2733 -0.8352 5.3799 18 8 3.9623 -2.0063 5.3259 19 7 4.9653 -0.3699 6.4388 20 6 5.3174 -1.2202 7.4549 21 1 5.0405 -2.2630 7.4068 22 6 6.0304 -0.7404 8.5467 23 7 6.3668 0.5286 8.6056 24 14 6.5106 -1.8991 9.9310 25 1 7.3676 -2.9856 9.3922 26 1 7.2602 -1.1466 10.9688 27 1 5.2863 -2.4865 10.5321 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8899 31 1 0.1555 -1.6478 -1.6409 32 1 0.9761 -2.8088 -3.6508 33 1 3.3141 -2.5253 -4.3692 34 1 4.8294 -1.0713 -3.0843 35 1 2.6299 -2.6884 1.0123 36 1 1.6027 -2.3398 2.4235 37 1 0.8852 -2.4096 0.7960 38 1 2.9819 -1.5920 3.3524 39 1 4.7857 0.5301 3.8215 40 1 3.2579 0.8972 4.6580 41 1 5.2143 0.5666 6.4819 42 1 6.8649 0.8634 9.3676 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358307537.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:20 Heat of formation + Delta-G solvation = -38.127297 kcal Electronic energy + Delta-G solvation = -26810.411567 eV Core-core repulsion = 22816.724527 eV Total energy + Delta-G solvation = -3993.687039 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.52243 -39.39228 -38.18294 -36.46423 -36.10762 -34.44295 -33.74893 -32.44171 -31.33301 -30.99533 -29.41667 -27.51438 -26.85990 -24.71430 -23.95034 -22.69369 -21.29749 -19.61346 -19.44993 -18.33904 -17.81240 -17.48438 -16.42152 -15.89797 -15.78534 -15.40329 -15.19969 -14.81867 -14.43943 -14.39090 -14.19318 -13.94241 -13.79616 -13.43805 -13.36786 -13.07401 -12.57103 -12.44906 -12.26414 -12.06448 -11.99246 -11.85029 -11.67485 -11.60705 -11.59543 -11.14740 -11.08558 -10.71609 -10.49255 -10.29253 -9.90972 -9.60238 -9.25290 -8.92821 -8.83011 -8.59161 -8.44171 -8.07313 -6.48896 -3.90881 0.83136 0.92707 2.09636 2.75244 3.15261 3.22715 3.26514 3.39725 3.46060 3.78440 4.06269 4.20125 4.33223 4.44376 4.64398 4.84551 4.93278 4.98782 5.02931 5.08888 5.11726 5.19820 5.33054 5.41483 5.44597 5.59087 5.68794 5.72668 5.84124 5.92938 5.97284 6.05569 6.08809 6.11539 6.13572 6.47092 6.52205 6.83079 7.09094 7.48039 7.94891 8.22724 8.48206 8.85988 9.07101 9.42443 9.90523 10.68033 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.021608 B = 0.002394 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.475883 B =11693.759740 C =11864.249944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.192 3.808 3 H 0.117 0.883 4 C -0.089 4.089 5 C -0.100 4.100 6 C -0.120 4.120 7 C -0.107 4.107 8 C -0.115 4.115 9 C -0.023 4.023 10 Cl -0.046 7.046 11 N -0.624 5.624 12 C 0.079 3.921 13 C 0.710 3.290 14 O -0.589 6.589 15 N -0.724 5.724 16 C 0.128 3.872 17 C 0.430 3.570 18 O -0.598 6.598 19 N -0.550 5.550 20 C -0.305 4.305 21 H 0.104 0.896 22 C 0.025 3.975 23 N -0.895 5.895 24 Si 0.934 3.066 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.273 1.273 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.135 0.865 32 H 0.127 0.873 33 H 0.129 0.871 34 H 0.132 0.868 35 H 0.053 0.947 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.406 0.594 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.396 0.604 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.356 -2.886 -23.622 25.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.088 3.912 3 H 0.135 0.865 4 C -0.091 4.091 5 C -0.119 4.119 6 C -0.138 4.138 7 C -0.125 4.125 8 C -0.133 4.133 9 C -0.050 4.050 10 Cl -0.017 7.017 11 N -0.361 5.361 12 C -0.065 4.065 13 C 0.411 3.589 14 O -0.467 6.467 15 N -0.382 5.382 16 C 0.000 4.000 17 C 0.215 3.785 18 O -0.485 6.485 19 N -0.184 5.184 20 C -0.434 4.434 21 H 0.122 0.878 22 C -0.177 4.177 23 N -0.535 5.535 24 Si 0.760 3.240 25 H -0.198 1.198 26 H -0.209 1.209 27 H -0.198 1.198 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.153 0.847 32 H 0.145 0.855 33 H 0.147 0.853 34 H 0.150 0.850 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.245 0.755 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.230 0.770 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.170 -2.579 -23.441 25.682 hybrid contribution 0.554 -0.463 0.840 1.108 sum -9.616 -3.042 -22.601 24.750 Atomic orbital electron populations 1.22244 0.94519 1.02345 1.02973 1.19709 0.93734 0.97525 0.80224 0.86505 1.20077 0.92331 0.99043 0.97663 1.21178 0.99965 0.95774 0.94948 1.21228 0.95929 0.99754 0.96932 1.21139 0.93681 0.98017 0.99706 1.21106 1.00736 0.97316 0.94191 1.21018 0.91765 0.97347 0.94870 1.98449 1.64128 1.65941 1.73144 1.46908 1.59499 1.09278 1.20406 1.21678 1.01438 0.80962 1.02386 1.15725 0.78466 0.84935 0.79790 1.90883 1.63412 1.13413 1.78992 1.44901 1.59367 1.13918 1.20032 1.20769 0.96848 0.94098 0.88278 1.19775 0.84900 0.88910 0.84887 1.90483 1.60134 1.17735 1.80146 1.41778 1.47260 1.12202 1.17195 1.19670 1.32655 0.94050 0.97039 0.87771 1.25319 0.96825 0.96562 0.99024 1.69610 1.38721 1.13342 1.31869 0.85877 0.78804 0.79517 0.79788 1.19805 1.20867 1.19794 0.91187 0.91988 0.91404 0.84694 0.85465 0.85277 0.85026 0.92853 0.91034 0.90929 0.75475 0.90153 0.90078 0.77026 0.91562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 8.12 37.16 0.30 -1.08 16 2 C 0.19 2.19 2.20 -69.08 -0.15 2.04 16 3 H 0.12 1.62 6.29 -51.93 -0.33 1.29 16 4 C -0.09 -0.91 4.68 -104.59 -0.49 -1.40 16 5 C -0.10 -0.78 9.10 -39.59 -0.36 -1.14 16 6 C -0.12 -0.82 10.05 -39.58 -0.40 -1.22 16 7 C -0.11 -0.79 10.05 -39.59 -0.40 -1.18 16 8 C -0.11 -1.06 9.83 -39.55 -0.39 -1.45 16 9 C -0.02 -0.26 6.31 -39.50 -0.25 -0.51 16 10 Cl -0.05 -0.63 26.77 -51.86 -1.39 -2.02 16 11 N -0.62 -8.16 2.73 -181.00 -0.49 -8.66 16 12 C 0.08 0.84 9.25 59.85 0.55 1.39 16 13 C 0.71 11.94 7.87 -86.92 -0.68 11.26 16 14 O -0.59 -11.40 15.28 5.29 0.08 -11.32 16 15 N -0.72 -12.80 5.39 -66.41 -0.36 -13.16 16 16 C 0.13 2.48 6.15 -5.19 -0.03 2.45 16 17 C 0.43 10.05 7.85 -10.99 -0.09 9.96 16 18 O -0.60 -15.48 15.24 5.55 0.08 -15.39 16 19 N -0.55 -13.84 5.29 -10.96 -0.06 -13.90 16 20 C -0.30 -8.36 9.68 -14.94 -0.14 -8.50 16 21 H 0.10 2.96 7.16 -52.48 -0.38 2.59 16 22 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 23 N -0.90 -24.16 13.05 55.50 0.72 -23.43 16 24 Si 0.93 20.72 29.55 -169.99 -5.02 15.69 16 25 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 26 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 27 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 28 H 0.07 0.49 8.13 -51.93 -0.42 0.07 16 29 H 0.06 0.43 5.58 -51.93 -0.29 0.14 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.14 0.78 5.96 -52.48 -0.31 0.47 16 32 H 0.13 0.57 8.06 -52.49 -0.42 0.14 16 33 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 34 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.79 6.65 -51.93 -0.35 0.44 16 37 H 0.07 0.59 6.76 -51.93 -0.35 0.23 16 38 H 0.41 7.07 5.28 -40.82 -0.22 6.86 16 39 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 40 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 41 H 0.40 9.62 7.90 -40.82 -0.32 9.30 16 42 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 366.03 15.07 5.52 5.52 Total: -1.00 -32.22 366.03 -8.59 -40.81 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: -5.06 Total: 14.67 kcal Atomic # 6 Polarization: 13.81 SS G_CDS: -2.62 Total: 11.19 kcal Atomic # 7 Polarization: -58.95 SS G_CDS: -0.19 Total: -59.14 kcal Atomic # 8 Polarization: -26.88 SS G_CDS: 0.17 Total: -26.72 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.39 Total: -2.02 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.22 -8.59 -40.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358307537.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.684 kcal (2) G-P(sol) polarization free energy of solvation -32.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds