Wall clock time and date at job start Tue Mar 31 2020 22:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.46993 * 2 1 4 4 C 1.50701 * 109.47090 * 240.00197 * 2 1 3 5 5 C 1.38233 * 120.00991 * 343.48282 * 4 2 1 6 6 C 1.38221 * 120.01385 * 180.02562 * 5 4 2 7 7 C 1.38258 * 120.02676 * 0.02562 * 6 5 4 8 8 C 1.38194 * 120.01237 * 359.68578 * 7 6 5 9 9 C 1.38331 * 120.00338 * 163.49891 * 4 2 1 10 10 Cl 1.73595 * 120.01609 * 359.97438 * 9 4 2 11 11 N 1.46497 * 109.47267 * 120.00019 * 2 1 3 12 12 C 1.46505 * 119.99912 * 65.57814 * 11 2 1 13 13 C 1.34775 * 120.00305 * 245.58275 * 11 2 1 14 14 O 1.21585 * 119.99566 * 359.97438 * 13 11 2 15 15 N 1.34774 * 119.99860 * 180.02562 * 13 11 2 16 16 C 1.46506 * 119.99847 * 179.97438 * 15 13 11 17 17 C 1.50697 * 109.47097 * 179.97438 * 16 15 13 18 18 O 1.21294 * 120.00157 * 0.02562 * 17 16 15 19 19 N 1.34779 * 119.99878 * 179.97438 * 17 16 15 20 20 C 1.37095 * 120.00112 * 180.02562 * 19 17 16 21 21 H 1.08004 * 119.99890 * 0.02562 * 20 19 17 22 22 C 1.38947 * 120.00374 * 180.02562 * 20 19 17 23 23 N 1.31415 * 119.99804 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00359 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47219 * 59.99606 * 24 22 20 26 26 H 1.48503 * 109.47158 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.46994 * 299.99875 * 24 22 20 28 28 H 1.08997 * 109.46882 * 59.99968 * 1 2 3 29 29 H 1.09003 * 109.46887 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47053 * 299.99669 * 1 2 3 31 31 H 1.08004 * 119.99226 * 359.97438 * 5 4 2 32 32 H 1.07997 * 119.98287 * 179.97438 * 6 5 4 33 33 H 1.08004 * 119.99109 * 179.97438 * 7 6 5 34 34 H 1.08000 * 120.00477 * 180.30056 * 8 7 6 35 35 H 1.09004 * 109.46746 * 95.24545 * 12 11 2 36 36 H 1.08994 * 109.47637 * 215.24855 * 12 11 2 37 37 H 1.09004 * 109.47094 * 335.24976 * 12 11 2 38 38 H 0.96999 * 120.00082 * 359.97438 * 15 13 11 39 39 H 1.09000 * 109.47029 * 300.00024 * 16 15 13 40 40 H 1.09003 * 109.46834 * 60.00030 * 16 15 13 41 41 H 0.96996 * 120.00236 * 0.02562 * 19 17 16 42 42 H 0.96997 * 119.99716 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 6 1.1809 -1.5222 -1.9562 6 6 1.6416 -2.1742 -3.0845 7 6 2.9545 -2.0153 -3.4877 8 6 3.8052 -1.1992 -2.7665 9 6 3.3459 -0.5503 -1.6338 10 17 4.4158 0.4692 -0.7233 11 7 2.0184 -0.6906 1.1961 12 6 1.7680 -2.1238 1.3680 13 6 2.6980 -0.0075 2.1385 14 8 2.9061 1.1819 1.9956 15 7 3.1476 -0.6430 3.2386 16 6 3.8868 0.0994 4.2627 17 6 4.2733 -0.8352 5.3799 18 8 3.9623 -2.0063 5.3259 19 7 4.9653 -0.3699 6.4388 20 6 5.3174 -1.2202 7.4549 21 1 5.0405 -2.2630 7.4068 22 6 6.0304 -0.7404 8.5467 23 7 6.3668 0.5286 8.6056 24 14 6.5106 -1.8991 9.9310 25 1 7.3676 -2.9856 9.3922 26 1 7.2602 -1.1466 10.9688 27 1 5.2863 -2.4865 10.5321 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8899 31 1 0.1555 -1.6478 -1.6409 32 1 0.9761 -2.8088 -3.6508 33 1 3.3141 -2.5253 -4.3692 34 1 4.8294 -1.0713 -3.0843 35 1 2.6299 -2.6884 1.0123 36 1 1.6027 -2.3398 2.4235 37 1 0.8852 -2.4096 0.7960 38 1 2.9819 -1.5920 3.3524 39 1 4.7857 0.5301 3.8215 40 1 3.2579 0.8972 4.6580 41 1 5.2143 0.5666 6.4819 42 1 6.8649 0.8634 9.3676 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358307537.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:19 Heat of formation + Delta-G solvation = -59.042765 kcal Electronic energy + Delta-G solvation = -26811.318529 eV Core-core repulsion = 22816.724527 eV Total energy + Delta-G solvation = -3994.594002 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -41.59424 -40.49320 -39.86909 -37.36869 -37.12897 -36.24207 -35.38143 -33.51365 -33.24280 -31.64662 -30.15615 -29.07617 -27.83575 -26.44498 -24.92487 -23.34334 -22.28551 -21.36993 -20.64553 -20.10260 -19.31719 -18.21485 -17.62972 -17.26631 -17.02996 -16.63598 -16.37479 -16.21394 -16.02284 -15.74285 -15.34680 -14.98075 -14.85408 -14.63473 -14.32986 -14.17027 -13.96198 -13.54375 -13.50453 -13.31519 -13.18983 -12.92559 -12.89810 -12.65891 -12.47441 -12.45911 -12.41375 -12.13907 -11.84948 -11.60024 -11.56583 -11.24879 -10.56183 -10.24814 -10.09896 -9.91894 -9.66137 -9.53271 -8.51098 -6.01594 0.14524 0.29174 1.27223 1.37728 1.41804 1.52590 1.62855 1.89207 2.16541 2.27800 2.69149 2.93777 3.15902 3.18485 3.53641 3.78584 4.09089 4.17439 4.20872 4.23737 4.31737 4.41365 4.42202 4.44126 4.47524 4.59620 4.67201 4.75693 4.84303 4.95517 5.01188 5.19600 5.33630 5.34564 5.38750 5.39729 5.50275 5.57993 5.89079 5.91402 5.92355 6.47415 6.92988 7.02679 7.41862 7.55509 7.93481 8.65742 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.021608 B = 0.002394 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.475883 B =11693.759740 C =11864.249944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.189 3.811 3 H 0.085 0.915 4 C -0.101 4.101 5 C -0.095 4.095 6 C -0.112 4.112 7 C -0.103 4.103 8 C -0.127 4.127 9 C -0.047 4.047 10 Cl -0.084 7.084 11 N -0.616 5.616 12 C 0.076 3.924 13 C 0.707 3.293 14 O -0.619 6.619 15 N -0.727 5.727 16 C 0.143 3.857 17 C 0.435 3.565 18 O -0.623 6.623 19 N -0.559 5.559 20 C -0.337 4.337 21 H 0.087 0.913 22 C -0.011 4.011 23 N -0.917 5.917 24 Si 0.998 3.002 25 H -0.270 1.270 26 H -0.272 1.272 27 H -0.268 1.268 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.053 0.947 31 H 0.161 0.839 32 H 0.162 0.838 33 H 0.157 0.843 34 H 0.135 0.865 35 H 0.050 0.950 36 H 0.066 0.934 37 H 0.106 0.894 38 H 0.408 0.592 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.398 0.602 42 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.980 -4.678 -25.199 28.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.086 3.914 3 H 0.103 0.897 4 C -0.103 4.103 5 C -0.113 4.113 6 C -0.130 4.130 7 C -0.121 4.121 8 C -0.145 4.145 9 C -0.074 4.074 10 Cl -0.055 7.055 11 N -0.352 5.352 12 C -0.066 4.066 13 C 0.408 3.592 14 O -0.499 6.499 15 N -0.386 5.386 16 C 0.014 3.986 17 C 0.222 3.778 18 O -0.511 6.511 19 N -0.194 5.194 20 C -0.467 4.467 21 H 0.105 0.895 22 C -0.212 4.212 23 N -0.557 5.557 24 Si 0.821 3.179 25 H -0.195 1.195 26 H -0.196 1.196 27 H -0.193 1.193 28 H 0.107 0.893 29 H 0.104 0.896 30 H 0.072 0.928 31 H 0.179 0.821 32 H 0.179 0.821 33 H 0.174 0.826 34 H 0.152 0.848 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.124 0.876 38 H 0.247 0.753 39 H 0.103 0.897 40 H 0.109 0.891 41 H 0.232 0.768 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.820 -4.377 -25.063 28.054 hybrid contribution 1.001 0.049 1.161 1.534 sum -10.818 -4.328 -23.902 26.591 Atomic orbital electron populations 1.22209 0.91953 1.03926 1.03225 1.19802 0.95568 0.95992 0.80072 0.89689 1.20035 0.92333 1.00241 0.97717 1.21469 1.00601 0.94531 0.94681 1.21659 0.96032 0.98975 0.96313 1.21514 0.93739 0.96903 0.99948 1.21285 1.01541 0.97767 0.93954 1.21250 0.91993 0.98309 0.95849 1.98430 1.65458 1.67350 1.74237 1.46990 1.58138 1.10170 1.19907 1.21836 1.02799 0.79283 1.02712 1.15858 0.78623 0.84722 0.80018 1.90859 1.64618 1.14833 1.79632 1.44846 1.59670 1.13846 1.20199 1.20538 0.97450 0.93251 0.87333 1.20370 0.83429 0.89030 0.85011 1.90456 1.60741 1.19130 1.80761 1.41830 1.47948 1.12137 1.17525 1.19710 1.34482 0.93826 0.98634 0.89498 1.26155 0.96086 0.98154 1.00806 1.69684 1.38780 1.14575 1.32668 0.84916 0.78567 0.77591 0.76841 1.19480 1.19623 1.19348 0.89326 0.89609 0.92814 0.82125 0.82081 0.82561 0.84752 0.93126 0.91555 0.87558 0.75304 0.89739 0.89142 0.76773 0.91060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 8.12 71.98 0.58 -1.72 16 2 C 0.19 4.19 2.20 44.25 0.10 4.29 16 3 H 0.09 2.45 6.29 -2.39 -0.02 2.44 16 4 C -0.10 -1.93 4.68 -19.84 -0.09 -2.02 16 5 C -0.09 -1.12 9.10 22.26 0.20 -0.91 16 6 C -0.11 -1.04 10.05 22.27 0.22 -0.82 16 7 C -0.10 -1.18 10.05 22.26 0.22 -0.95 16 8 C -0.13 -2.21 9.83 22.29 0.22 -1.99 16 9 C -0.05 -1.05 6.31 22.32 0.14 -0.91 16 10 Cl -0.08 -2.42 26.77 -2.72 -0.07 -2.50 16 11 N -0.62 -15.91 2.73 -844.82 -2.31 -18.21 16 12 C 0.08 1.51 9.25 127.77 1.18 2.69 16 13 C 0.71 24.25 7.87 179.06 1.41 25.66 16 14 O -0.62 -24.82 15.28 -3.99 -0.06 -24.88 16 15 N -0.73 -26.14 5.39 -482.29 -2.60 -28.75 16 16 C 0.14 5.63 6.15 85.63 0.53 6.16 16 17 C 0.43 20.78 7.85 87.66 0.69 21.47 16 18 O -0.62 -32.86 15.24 -3.07 -0.05 -32.91 16 19 N -0.56 -28.85 5.29 -306.98 -1.62 -30.47 16 20 C -0.34 -18.87 9.68 84.04 0.81 -18.06 16 21 H 0.09 5.08 7.16 -2.91 -0.02 5.06 16 22 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 23 N -0.92 -49.58 13.05 21.66 0.28 -49.29 16 24 Si 1.00 42.21 29.55 68.60 2.03 44.24 16 25 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 26 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 27 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 28 H 0.09 1.00 8.13 -2.39 -0.02 0.98 16 29 H 0.09 0.85 5.58 -2.39 -0.01 0.83 16 30 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.16 1.03 5.96 -2.91 -0.02 1.01 16 32 H 0.16 0.47 8.06 -2.91 -0.02 0.45 16 33 H 0.16 0.92 8.06 -2.91 -0.02 0.89 16 34 H 0.13 2.13 8.06 -2.91 -0.02 2.11 16 35 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.07 1.40 6.65 -2.39 -0.02 1.39 16 37 H 0.11 1.36 6.76 -2.38 -0.02 1.35 16 38 H 0.41 14.39 5.28 -92.71 -0.49 13.90 16 39 H 0.08 3.27 8.14 -2.39 -0.02 3.26 16 40 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16 41 H 0.40 19.87 7.90 -92.71 -0.73 19.14 16 42 H 0.28 14.17 8.31 -92.71 -0.77 13.40 16 Total: -1.00 -71.74 366.03 2.15 -69.59 By element: Atomic # 1 Polarization: 40.57 SS G_CDS: -0.14 Total: 40.43 kcal Atomic # 6 Polarization: 26.06 SS G_CDS: 6.69 Total: 32.75 kcal Atomic # 7 Polarization: -120.48 SS G_CDS: -6.25 Total: -126.72 kcal Atomic # 8 Polarization: -57.68 SS G_CDS: -0.11 Total: -57.79 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Atomic # 17 Polarization: -2.42 SS G_CDS: -0.07 Total: -2.50 kcal Total: -71.74 2.15 -69.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358307537.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.549 kcal (2) G-P(sol) polarization free energy of solvation -71.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds