Wall clock time and date at job start Tue Mar 31 2020 23:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34782 * 119.99659 * 2 1 4 4 O 1.21587 * 119.99569 * 179.97438 * 3 2 1 5 5 N 1.34774 * 120.00280 * 0.02562 * 3 2 1 6 6 C 1.39270 * 120.00048 * 174.32645 * 5 3 2 7 7 C 1.39464 * 119.84129 * 335.10154 * 6 5 3 8 8 C 1.36375 * 120.18188 * 179.97438 * 7 6 5 9 9 C 1.40889 * 119.84911 * 359.97438 * 8 7 6 10 10 C 1.41153 * 120.15894 * 179.97438 * 9 8 7 11 11 H 1.08003 * 119.99942 * 34.90736 * 10 9 8 12 12 C 1.39888 * 119.99708 * 214.91505 * 10 9 8 13 13 N 1.30879 * 120.00016 * 355.22362 * 12 10 9 14 14 Si 1.86803 * 119.99796 * 175.23452 * 12 10 9 15 15 H 1.48492 * 109.47405 * 89.99596 * 14 12 10 16 16 H 1.48500 * 109.46681 * 209.99790 * 14 12 10 17 17 H 1.48499 * 109.46909 * 329.98997 * 14 12 10 18 18 C 1.40844 * 119.68186 * 359.97438 * 9 8 7 19 19 C 1.36470 * 119.81696 * 359.74559 * 18 9 8 20 20 Cl 1.73608 * 119.92410 * 180.25063 * 19 18 9 21 21 C 1.46496 * 120.00089 * 179.97438 * 2 1 3 22 22 H 1.09000 * 110.28720 * 182.12347 * 21 2 1 23 23 C 1.54378 * 110.32732 * 304.36520 * 21 2 1 24 24 N 1.48848 * 104.63111 * 142.74780 * 23 21 2 25 25 C 1.48562 * 104.07986 * 320.54764 * 24 23 21 26 26 C 1.54266 * 110.32211 * 60.00230 * 21 2 1 27 27 H 1.08993 * 110.41114 * 0.04358 * 26 21 2 28 28 O 1.42905 * 110.32327 * 122.20688 * 26 21 2 29 29 H 1.08992 * 109.47178 * 270.00042 * 1 2 3 30 30 H 1.09007 * 109.47139 * 29.99897 * 1 2 3 31 31 H 1.09003 * 109.46790 * 149.99771 * 1 2 3 32 32 H 0.97003 * 119.99692 * 354.32444 * 5 3 2 33 33 H 1.08000 * 119.90780 * 359.97438 * 7 6 5 34 34 H 1.08003 * 120.07322 * 180.02562 * 8 7 6 35 35 H 0.97002 * 119.99913 * 180.02562 * 13 12 10 36 36 H 1.07995 * 120.08825 * 179.97438 * 18 9 8 37 37 H 1.09005 * 110.40874 * 261.53141 * 23 21 2 38 38 H 1.09004 * 110.40840 * 23.96571 * 23 21 2 39 39 H 1.00898 * 111.13244 * 201.00276 * 24 23 21 40 40 H 1.09005 * 110.40723 * 280.63063 * 25 24 23 41 41 H 1.08995 * 110.41280 * 158.30796 * 25 24 23 42 42 H 0.96694 * 113.99558 * 177.08951 * 28 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3547 1.1673 0.0005 5 7 1.4650 2.3345 0.0005 6 6 2.1562 3.5376 0.1198 7 6 3.4052 3.5618 0.7397 8 6 4.0884 4.7360 0.8598 9 6 3.5299 5.9270 0.3552 10 6 4.2311 7.1460 0.4764 11 1 5.3088 7.1583 0.4069 12 6 3.5300 8.3382 0.6867 13 7 2.2213 8.3380 0.6778 14 14 4.4619 9.9304 0.9798 15 1 4.7181 10.6007 -0.3202 16 1 3.6534 10.8246 1.8470 17 1 5.7550 9.6316 1.6461 18 6 2.2686 5.8954 -0.2708 19 6 1.5991 4.7120 -0.3888 20 17 0.0472 4.6688 -1.1657 21 6 2.1975 -1.2687 0.0006 22 1 3.2713 -1.0851 0.0384 23 6 1.7580 -2.1412 1.1959 24 7 1.7599 -3.5324 0.6668 25 6 1.2131 -3.3970 -0.7079 26 6 1.8390 -2.0949 -1.2519 27 1 1.1187 -1.5574 -1.8685 28 8 3.0164 -2.3879 -2.0070 29 1 -0.3633 0.0000 1.0276 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5139 32 1 0.4985 2.3365 -0.0822 33 1 3.8326 2.6482 1.1258 34 1 5.0557 4.7527 1.3399 35 1 1.7352 9.1647 0.8232 36 1 1.8342 6.8044 -0.6596 37 1 2.4682 -2.0461 2.0174 38 1 0.7569 -1.8607 1.5235 39 1 1.1792 -4.1363 1.2291 40 1 0.1267 -3.3131 -0.6783 41 1 1.5114 -4.2472 -1.3212 42 1 2.8581 -2.9432 -2.7825 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000415791371.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:54:09 Heat of formation + Delta-G solvation = -36.447185 kcal Electronic energy + Delta-G solvation = -27124.913258 eV Core-core repulsion = 23131.299074 eV Total energy + Delta-G solvation = -3993.614184 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.62805 -39.13299 -37.57495 -35.79984 -35.53754 -34.84559 -34.51456 -32.94006 -29.64108 -29.35529 -28.55911 -28.51940 -26.81604 -24.95891 -22.34224 -22.00303 -21.28617 -20.45241 -19.29583 -18.43539 -17.55356 -17.26577 -17.13678 -16.34557 -15.65224 -15.37197 -15.30532 -14.84647 -14.27606 -13.90068 -13.86937 -13.68372 -13.49249 -13.15668 -12.92808 -12.85702 -12.73188 -12.45870 -12.32281 -12.19838 -11.93280 -11.66744 -11.36095 -11.12315 -11.01933 -10.95000 -10.51575 -10.37271 -10.28418 -10.09578 -9.95058 -9.53923 -9.30225 -9.00402 -8.89759 -8.72968 -7.53628 -6.93254 -6.69327 -4.41855 2.43554 2.62856 2.87216 3.06095 3.07955 3.13086 3.15808 3.54915 3.87335 3.93774 3.96799 4.17466 4.37711 4.45451 4.60507 4.71576 4.80306 4.97629 5.05074 5.17398 5.26061 5.40873 5.42280 5.48669 5.63992 5.80608 6.09775 6.16138 6.38980 6.54155 6.68425 6.85125 6.86371 6.98149 7.07865 7.21910 7.35980 7.46143 7.66872 7.70563 7.93960 8.13152 8.28186 8.46760 8.77042 8.83251 8.93133 10.21754 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.023190 B = 0.002678 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.134683 B =10451.350670 C =11097.081239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.630 5.630 3 C 0.701 3.299 4 O -0.567 6.567 5 N -0.662 5.662 6 C 0.037 3.963 7 C -0.087 4.087 8 C -0.195 4.195 9 C 0.104 3.896 10 C -0.456 4.456 11 H 0.080 0.920 12 C 0.069 3.931 13 N -0.808 5.808 14 Si 0.917 3.083 15 H -0.269 1.269 16 H -0.278 1.278 17 H -0.262 1.262 18 C -0.132 4.132 19 C -0.028 4.028 20 Cl -0.123 7.123 21 C 0.162 3.838 22 H 0.127 0.873 23 C 0.028 3.972 24 N -0.656 5.656 25 C 0.003 3.997 26 C 0.089 3.911 27 H 0.067 0.933 28 O -0.548 6.548 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.395 0.605 33 H 0.127 0.873 34 H 0.103 0.897 35 H 0.280 0.720 36 H 0.145 0.855 37 H 0.093 0.907 38 H 0.050 0.950 39 H 0.339 0.661 40 H 0.047 0.953 41 H 0.088 0.912 42 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.312 -17.497 -1.577 19.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.369 5.369 3 C 0.403 3.597 4 O -0.443 6.443 5 N -0.309 5.309 6 C -0.057 4.057 7 C -0.107 4.107 8 C -0.215 4.215 9 C 0.100 3.900 10 C -0.487 4.487 11 H 0.098 0.902 12 C -0.146 4.146 13 N -0.435 5.435 14 Si 0.742 3.258 15 H -0.195 1.195 16 H -0.203 1.203 17 H -0.186 1.186 18 C -0.152 4.152 19 C -0.057 4.057 20 Cl -0.095 7.095 21 C 0.056 3.944 22 H 0.145 0.855 23 C -0.102 4.102 24 N -0.285 5.285 25 C -0.127 4.127 26 C 0.028 3.972 27 H 0.085 0.915 28 O -0.352 6.352 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.232 0.768 33 H 0.145 0.855 34 H 0.122 0.878 35 H 0.091 0.909 36 H 0.162 0.838 37 H 0.111 0.889 38 H 0.068 0.932 39 H 0.155 0.845 40 H 0.066 0.934 41 H 0.106 0.894 42 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -6.765 -17.028 -1.300 18.369 hybrid contribution -1.923 0.527 -0.223 2.006 sum -8.687 -16.501 -1.523 18.710 Atomic orbital electron populations 1.21711 0.80481 1.02815 1.01849 1.46982 1.05810 1.04573 1.79487 1.15805 0.85370 0.80083 0.78396 1.90890 1.11249 1.85391 1.56786 1.42252 1.09623 1.03588 1.75431 1.16775 0.96393 0.82293 1.10284 1.20562 0.93117 0.98544 0.98456 1.20941 1.01363 0.92861 1.06370 1.17598 0.91271 0.92522 0.88567 1.19477 0.94894 0.90799 1.43532 0.90179 1.25904 0.94978 1.00798 0.92948 1.69739 1.07244 1.29197 1.37320 0.86154 0.80206 0.80373 0.79049 1.19450 1.20261 1.18638 1.21193 0.96970 0.95193 1.01859 1.20353 0.87081 0.95099 1.03162 1.98242 1.31457 1.98795 1.81012 1.21396 1.00060 0.81372 0.91566 0.85526 1.23327 1.01020 0.88159 0.97701 1.63731 1.53196 1.08808 1.02784 1.23695 0.97234 0.99131 0.92597 1.22922 0.87350 0.93748 0.93136 0.91482 1.86633 1.32246 1.73529 1.42837 0.92391 0.91119 0.91287 0.76820 0.85510 0.87849 0.90901 0.83781 0.88884 0.93153 0.84543 0.93432 0.89419 0.77680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.69 8.83 59.85 0.53 1.22 16 2 N -0.63 -8.41 2.79 -178.08 -0.50 -8.91 16 3 C 0.70 12.79 8.07 -86.92 -0.70 12.09 16 4 O -0.57 -12.52 12.83 5.29 0.07 -12.45 16 5 N -0.66 -12.19 5.04 -14.07 -0.07 -12.26 16 6 C 0.04 0.82 6.44 -83.52 -0.54 0.28 16 7 C -0.09 -2.04 8.63 -39.80 -0.34 -2.39 16 8 C -0.20 -4.80 9.74 -39.25 -0.38 -5.18 16 9 C 0.10 2.70 5.55 -106.80 -0.59 2.11 16 10 C -0.46 -11.83 9.02 -37.86 -0.34 -12.17 16 11 H 0.08 1.99 7.85 -52.48 -0.41 1.58 16 12 C 0.07 1.71 5.42 -17.34 -0.09 1.61 16 13 N -0.81 -20.45 10.59 55.54 0.59 -19.86 16 14 Si 0.92 18.59 29.56 -169.99 -5.03 13.56 16 15 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 16 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 17 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 18 C -0.13 -3.34 8.38 -39.23 -0.33 -3.67 16 19 C -0.03 -0.65 6.30 -39.72 -0.25 -0.90 16 20 Cl -0.12 -2.36 27.75 -51.86 -1.44 -3.80 16 21 C 0.16 2.05 3.27 -66.55 -0.22 1.83 16 22 H 0.13 2.09 6.80 -51.93 -0.35 1.74 16 23 C 0.03 0.28 7.08 -2.02 -0.01 0.26 16 24 N -0.66 -5.67 7.64 -109.44 -0.84 -6.51 16 25 C 0.00 0.03 7.19 -2.18 -0.02 0.01 16 26 C 0.09 0.92 3.60 -25.35 -0.09 0.83 16 27 H 0.07 0.65 7.08 -51.93 -0.37 0.28 16 28 O -0.55 -6.37 13.27 -35.23 -0.47 -6.84 16 29 H 0.06 0.47 7.88 -51.93 -0.41 0.06 16 30 H 0.07 0.66 6.29 -51.93 -0.33 0.33 16 31 H 0.07 0.47 6.94 -51.93 -0.36 0.11 16 32 H 0.40 6.23 5.43 -40.82 -0.22 6.01 16 33 H 0.13 2.98 5.76 -52.49 -0.30 2.68 16 34 H 0.10 2.39 8.06 -52.48 -0.42 1.97 16 35 H 0.28 6.50 8.30 -40.82 -0.34 6.17 16 36 H 0.14 3.82 6.13 -52.49 -0.32 3.50 16 37 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.05 0.42 6.81 -51.93 -0.35 0.07 16 39 H 0.34 2.16 8.93 -39.29 -0.35 1.81 16 40 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 41 H 0.09 0.58 8.06 -51.93 -0.42 0.16 16 42 H 0.38 2.47 9.09 45.56 0.41 2.89 16 LS Contribution 354.03 15.07 5.34 5.34 Total: -1.00 -31.12 354.03 -9.91 -41.03 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: -4.19 Total: 14.77 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: -3.38 Total: -4.07 kcal Atomic # 7 Polarization: -46.73 SS G_CDS: -0.81 Total: -47.54 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.40 Total: -19.29 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.56 kcal Atomic # 17 Polarization: -2.36 SS G_CDS: -1.44 Total: -3.80 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.12 -9.91 -41.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415791371.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.582 kcal (2) G-P(sol) polarization free energy of solvation -31.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds