Wall clock time and date at job start Tue Mar 31 2020 23:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34782 * 119.99659 * 2 1 4 4 O 1.21587 * 119.99569 * 179.97438 * 3 2 1 5 5 N 1.34774 * 120.00280 * 0.02562 * 3 2 1 6 6 C 1.39270 * 120.00048 * 174.32645 * 5 3 2 7 7 C 1.39464 * 119.84129 * 335.10154 * 6 5 3 8 8 C 1.36375 * 120.18188 * 179.97438 * 7 6 5 9 9 C 1.40889 * 119.84911 * 359.97438 * 8 7 6 10 10 C 1.41153 * 120.15894 * 179.97438 * 9 8 7 11 11 H 1.08003 * 119.99942 * 34.90736 * 10 9 8 12 12 C 1.39888 * 119.99708 * 214.91505 * 10 9 8 13 13 N 1.30879 * 120.00016 * 355.22362 * 12 10 9 14 14 Si 1.86803 * 119.99796 * 175.23452 * 12 10 9 15 15 H 1.48492 * 109.47405 * 89.99596 * 14 12 10 16 16 H 1.48500 * 109.46681 * 209.99790 * 14 12 10 17 17 H 1.48499 * 109.46909 * 329.98997 * 14 12 10 18 18 C 1.40844 * 119.68186 * 359.97438 * 9 8 7 19 19 C 1.36470 * 119.81696 * 359.74559 * 18 9 8 20 20 Cl 1.73608 * 119.92410 * 180.25063 * 19 18 9 21 21 C 1.46496 * 120.00089 * 179.97438 * 2 1 3 22 22 H 1.09000 * 110.28720 * 182.12347 * 21 2 1 23 23 C 1.54378 * 110.32732 * 304.36520 * 21 2 1 24 24 N 1.48848 * 104.63111 * 142.74780 * 23 21 2 25 25 C 1.48562 * 104.07986 * 320.54764 * 24 23 21 26 26 C 1.54266 * 110.32211 * 60.00230 * 21 2 1 27 27 H 1.08993 * 110.41114 * 0.04358 * 26 21 2 28 28 O 1.42905 * 110.32327 * 122.20688 * 26 21 2 29 29 H 1.08992 * 109.47178 * 270.00042 * 1 2 3 30 30 H 1.09007 * 109.47139 * 29.99897 * 1 2 3 31 31 H 1.09003 * 109.46790 * 149.99771 * 1 2 3 32 32 H 0.97003 * 119.99692 * 354.32444 * 5 3 2 33 33 H 1.08000 * 119.90780 * 359.97438 * 7 6 5 34 34 H 1.08003 * 120.07322 * 180.02562 * 8 7 6 35 35 H 0.97002 * 119.99913 * 180.02562 * 13 12 10 36 36 H 1.07995 * 120.08825 * 179.97438 * 18 9 8 37 37 H 1.09005 * 110.40874 * 261.53141 * 23 21 2 38 38 H 1.09004 * 110.40840 * 23.96571 * 23 21 2 39 39 H 1.00898 * 111.13244 * 201.00276 * 24 23 21 40 40 H 1.09005 * 110.40723 * 280.63063 * 25 24 23 41 41 H 1.08995 * 110.41280 * 158.30796 * 25 24 23 42 42 H 0.96694 * 113.99558 * 177.08951 * 28 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3547 1.1673 0.0005 5 7 1.4650 2.3345 0.0005 6 6 2.1562 3.5376 0.1198 7 6 3.4052 3.5618 0.7397 8 6 4.0884 4.7360 0.8598 9 6 3.5299 5.9270 0.3552 10 6 4.2311 7.1460 0.4764 11 1 5.3088 7.1583 0.4069 12 6 3.5300 8.3382 0.6867 13 7 2.2213 8.3380 0.6778 14 14 4.4619 9.9304 0.9798 15 1 4.7181 10.6007 -0.3202 16 1 3.6534 10.8246 1.8470 17 1 5.7550 9.6316 1.6461 18 6 2.2686 5.8954 -0.2708 19 6 1.5991 4.7120 -0.3888 20 17 0.0472 4.6688 -1.1657 21 6 2.1975 -1.2687 0.0006 22 1 3.2713 -1.0851 0.0384 23 6 1.7580 -2.1412 1.1959 24 7 1.7599 -3.5324 0.6668 25 6 1.2131 -3.3970 -0.7079 26 6 1.8390 -2.0949 -1.2519 27 1 1.1187 -1.5574 -1.8685 28 8 3.0164 -2.3879 -2.0070 29 1 -0.3633 0.0000 1.0276 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5139 32 1 0.4985 2.3365 -0.0822 33 1 3.8326 2.6482 1.1258 34 1 5.0557 4.7527 1.3399 35 1 1.7352 9.1647 0.8232 36 1 1.8342 6.8044 -0.6596 37 1 2.4682 -2.0461 2.0174 38 1 0.7569 -1.8607 1.5235 39 1 1.1792 -4.1363 1.2291 40 1 0.1267 -3.3131 -0.6783 41 1 1.5114 -4.2472 -1.3212 42 1 2.8581 -2.9432 -2.7825 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000415791371.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:54:08 Heat of formation + Delta-G solvation = -60.355872 kcal Electronic energy + Delta-G solvation = -27125.950017 eV Core-core repulsion = 23131.299074 eV Total energy + Delta-G solvation = -3994.650942 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.92118 -40.28822 -39.17831 -37.26127 -36.77185 -36.20410 -35.87247 -34.66006 -31.33368 -31.02297 -29.79098 -29.23070 -27.87781 -26.65704 -23.84602 -23.01693 -22.81503 -21.87924 -20.48891 -19.78234 -19.28824 -18.36824 -18.19131 -17.63432 -17.11377 -16.78961 -16.42922 -16.05693 -15.87886 -15.38487 -14.97615 -14.73663 -14.63119 -14.44853 -14.34831 -14.26605 -13.90934 -13.62029 -13.51498 -13.32207 -13.12239 -13.02978 -12.79498 -12.74847 -12.67380 -12.21598 -12.05764 -11.93420 -11.86873 -11.63609 -11.29382 -11.06613 -11.01752 -10.66244 -9.84488 -9.60401 -9.40713 -8.74407 -8.53359 -6.35563 0.63902 0.95730 1.33288 1.42285 1.45305 1.48542 1.56184 2.05609 2.24833 2.75037 2.83877 3.16384 3.32246 3.55349 3.63851 3.69448 3.98447 4.02837 4.16854 4.31187 4.38583 4.50518 4.56836 4.64006 4.72387 4.75700 4.87690 4.89708 4.90739 4.99868 5.16644 5.29422 5.32546 5.47276 5.54894 5.69253 5.84839 5.89574 6.07364 6.24077 6.35861 6.53623 6.84831 6.87849 6.88172 6.92278 7.46587 8.39655 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.023190 B = 0.002678 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.134683 B =10451.350670 C =11097.081239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.617 5.617 3 C 0.696 3.304 4 O -0.612 6.612 5 N -0.655 5.655 6 C 0.049 3.951 7 C -0.096 4.096 8 C -0.206 4.206 9 C 0.075 3.925 10 C -0.490 4.490 11 H 0.078 0.922 12 C 0.031 3.969 13 N -0.835 5.835 14 Si 0.989 3.011 15 H -0.262 1.262 16 H -0.269 1.269 17 H -0.261 1.261 18 C -0.147 4.147 19 C -0.034 4.034 20 Cl -0.087 7.087 21 C 0.152 3.848 22 H 0.078 0.922 23 C 0.038 3.962 24 N -0.669 5.669 25 C 0.013 3.987 26 C 0.089 3.911 27 H 0.077 0.923 28 O -0.578 6.578 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.102 0.898 32 H 0.410 0.590 33 H 0.126 0.874 34 H 0.108 0.892 35 H 0.287 0.713 36 H 0.130 0.870 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.355 0.645 40 H 0.077 0.923 41 H 0.100 0.900 42 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.603 -18.955 -1.790 21.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.355 5.355 3 C 0.398 3.602 4 O -0.492 6.492 5 N -0.304 5.304 6 C -0.046 4.046 7 C -0.116 4.116 8 C -0.226 4.226 9 C 0.072 3.928 10 C -0.521 4.521 11 H 0.096 0.904 12 C -0.182 4.182 13 N -0.462 5.462 14 Si 0.810 3.190 15 H -0.187 1.187 16 H -0.193 1.193 17 H -0.185 1.185 18 C -0.168 4.168 19 C -0.063 4.063 20 Cl -0.058 7.058 21 C 0.046 3.954 22 H 0.096 0.904 23 C -0.092 4.092 24 N -0.300 5.300 25 C -0.116 4.116 26 C 0.028 3.972 27 H 0.095 0.905 28 O -0.387 6.387 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.120 0.880 32 H 0.249 0.751 33 H 0.143 0.857 34 H 0.126 0.874 35 H 0.098 0.902 36 H 0.148 0.852 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.173 0.827 40 H 0.095 0.905 41 H 0.118 0.882 42 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -9.134 -18.572 -1.529 20.753 hybrid contribution -1.308 0.778 -0.220 1.537 sum -10.442 -17.794 -1.749 20.706 Atomic orbital electron populations 1.22072 0.77340 1.04586 1.03700 1.46961 1.07601 1.03115 1.77776 1.16025 0.84985 0.81090 0.78062 1.90860 1.13501 1.86215 1.58645 1.42082 1.10145 1.02597 1.75574 1.16803 0.95888 0.83628 1.08324 1.20642 0.93910 0.98068 0.98974 1.21071 1.01787 0.93034 1.06682 1.17888 0.92192 0.93181 0.89510 1.19696 0.95036 0.91830 1.45502 0.90396 1.26728 0.95783 1.03648 0.92076 1.69801 1.08484 1.30374 1.37583 0.85090 0.78768 0.76023 0.79150 1.18718 1.19316 1.18515 1.21094 0.97343 0.95568 1.02798 1.20341 0.88569 0.94487 1.02930 1.98237 1.28658 1.98735 1.80208 1.21493 0.97553 0.81612 0.94709 0.90351 1.23157 1.01651 0.88477 0.95935 1.63675 1.54509 1.08118 1.03690 1.23675 0.98540 0.97765 0.91639 1.22953 0.87089 0.94994 0.92126 0.90545 1.86586 1.33549 1.74371 1.44172 0.90472 0.90966 0.87960 0.75111 0.85678 0.87432 0.90236 0.85195 0.90311 0.90917 0.82748 0.90510 0.88168 0.75362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.97 8.83 127.77 1.13 2.10 16 2 N -0.62 -15.65 2.79 -835.57 -2.33 -17.98 16 3 C 0.70 25.37 8.07 179.05 1.45 26.81 16 4 O -0.61 -28.03 12.83 -3.99 -0.05 -28.08 16 5 N -0.66 -23.72 5.04 -316.69 -1.60 -25.31 16 6 C 0.05 2.22 6.44 38.58 0.25 2.46 16 7 C -0.10 -4.66 8.63 22.13 0.19 -4.47 16 8 C -0.21 -10.55 9.74 22.48 0.22 -10.33 16 9 C 0.08 4.09 5.55 -21.28 -0.12 3.97 16 10 C -0.49 -26.31 9.02 23.39 0.21 -26.10 16 11 H 0.08 4.04 7.85 -2.91 -0.02 4.02 16 12 C 0.03 1.53 5.42 85.23 0.46 1.99 16 13 N -0.84 -42.97 10.59 21.82 0.23 -42.74 16 14 Si 0.99 38.33 29.56 68.60 2.03 40.35 16 15 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 16 H -0.27 -9.93 7.11 99.48 0.71 -9.23 16 17 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 18 C -0.15 -7.69 8.38 22.49 0.19 -7.50 16 19 C -0.03 -1.58 6.30 22.18 0.14 -1.44 16 20 Cl -0.09 -3.22 27.75 -2.72 -0.08 -3.29 16 21 C 0.15 3.73 3.27 45.89 0.15 3.88 16 22 H 0.08 2.73 6.80 -2.39 -0.02 2.71 16 23 C 0.04 0.68 7.08 86.39 0.61 1.29 16 24 N -0.67 -9.76 7.64 -500.14 -3.82 -13.58 16 25 C 0.01 0.15 7.19 86.45 0.62 0.77 16 26 C 0.09 1.64 3.60 31.49 0.11 1.76 16 27 H 0.08 1.25 7.08 -2.39 -0.02 1.23 16 28 O -0.58 -13.00 13.27 -148.98 -1.98 -14.98 16 29 H 0.08 0.93 7.88 -2.39 -0.02 0.91 16 30 H 0.07 1.09 6.29 -2.38 -0.01 1.08 16 31 H 0.10 0.90 6.94 -2.39 -0.02 0.88 16 32 H 0.41 12.19 5.43 -92.71 -0.50 11.68 16 33 H 0.13 6.14 5.76 -2.91 -0.02 6.12 16 34 H 0.11 5.23 8.06 -2.91 -0.02 5.21 16 35 H 0.29 13.41 8.30 -92.71 -0.77 12.64 16 36 H 0.13 7.10 6.13 -2.91 -0.02 7.08 16 37 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 38 H 0.07 0.97 6.81 -2.39 -0.02 0.95 16 39 H 0.35 3.32 8.93 -89.70 -0.80 2.52 16 40 H 0.08 0.47 8.14 -2.38 -0.02 0.45 16 41 H 0.10 0.94 8.06 -2.39 -0.02 0.92 16 42 H 0.40 4.64 9.09 -74.06 -0.67 3.97 16 Total: -1.00 -71.19 354.03 -2.84 -74.03 By element: Atomic # 1 Polarization: 37.25 SS G_CDS: -0.86 Total: 36.38 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: 5.61 Total: -4.81 kcal Atomic # 7 Polarization: -92.10 SS G_CDS: -7.51 Total: -99.61 kcal Atomic # 8 Polarization: -41.03 SS G_CDS: -2.03 Total: -43.06 kcal Atomic # 14 Polarization: 38.33 SS G_CDS: 2.03 Total: 40.35 kcal Atomic # 17 Polarization: -3.22 SS G_CDS: -0.08 Total: -3.29 kcal Total: -71.19 -2.84 -74.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415791371.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.677 kcal (2) G-P(sol) polarization free energy of solvation -71.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds