Wall clock time and date at job start Tue Mar 31 2020 23:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34778 * 120.00231 * 2 1 4 4 O 1.21560 * 119.99994 * 0.27720 * 3 2 1 5 5 C 1.47782 * 119.99819 * 179.97438 * 3 2 1 6 6 C 1.39543 * 120.12403 * 359.72256 * 5 3 2 7 7 C 1.38548 * 119.79128 * 179.79028 * 6 5 3 8 8 N 1.39999 * 119.98218 * 180.23251 * 7 6 5 9 9 C 1.34771 * 120.00400 * 145.15346 * 8 7 6 10 10 O 1.21287 * 120.00146 * 4.60434 * 9 8 7 11 11 C 1.50704 * 120.00245 * 184.61429 * 9 8 7 12 12 H 1.08994 * 109.46840 * 319.99438 * 11 9 8 13 13 N 1.46899 * 109.46813 * 199.99819 * 11 9 8 14 14 C 1.52997 * 109.47142 * 79.99457 * 11 9 8 15 15 C 1.53002 * 109.46835 * 185.00195 * 14 11 9 16 16 C 1.50698 * 109.46933 * 180.02562 * 15 14 11 17 17 H 1.08003 * 120.00301 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00302 * 180.02562 * 16 15 14 19 19 N 1.31517 * 119.99716 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00391 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47218 * 59.99998 * 20 18 16 22 22 H 1.48509 * 109.47051 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.46920 * 299.99544 * 20 18 16 24 24 C 1.39017 * 120.03621 * 0.48498 * 7 6 5 25 25 C 1.38157 * 120.24866 * 359.74960 * 24 7 6 26 26 C 1.38181 * 120.20893 * 0.02562 * 25 24 7 27 27 Cl 1.73599 * 120.02077 * 179.97438 * 26 25 24 28 28 H 1.08999 * 109.46536 * 299.99904 * 1 2 3 29 29 H 1.09003 * 109.46763 * 59.99921 * 1 2 3 30 30 H 1.08994 * 109.47265 * 180.02562 * 1 2 3 31 31 H 0.97005 * 120.00014 * 180.02562 * 2 1 3 32 32 H 1.07997 * 120.10477 * 0.02562 * 6 5 3 33 33 H 0.97007 * 120.00127 * 325.14959 * 8 7 6 34 34 H 1.00904 * 110.99634 * 176.04869 * 13 11 9 35 35 H 1.00906 * 110.99971 * 299.99237 * 13 11 9 36 36 H 1.08997 * 109.47425 * 304.99980 * 14 11 9 37 37 H 1.09002 * 109.47044 * 65.00275 * 14 11 9 38 38 H 1.09006 * 109.46993 * 299.99929 * 15 14 11 39 39 H 1.09002 * 109.47239 * 60.00199 * 15 14 11 40 40 H 0.97000 * 120.00342 * 180.02562 * 19 18 16 41 41 H 1.07999 * 119.87352 * 179.71613 * 24 7 6 42 42 H 1.08002 * 119.89578 * 179.97438 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5312 2.2199 0.0051 5 6 3.6168 1.1671 0.0006 6 6 4.3170 -0.0399 0.0070 7 6 5.7024 -0.0320 0.0031 8 7 6.4090 -1.2406 0.0045 9 6 7.5741 -1.3409 -0.6653 10 8 8.0528 -0.3629 -1.1995 11 6 8.2823 -2.6685 -0.7509 12 1 8.2115 -3.1805 0.2087 13 7 9.6957 -2.4488 -1.0856 14 6 7.6285 -3.5263 -1.8361 15 6 8.2648 -4.9177 -1.8386 16 6 7.6213 -5.7624 -2.9078 17 1 6.8366 -5.3484 -3.5238 18 6 8.0335 -7.0641 -3.0992 19 7 8.9887 -7.5684 -2.3489 20 14 7.2353 -8.1114 -4.4242 21 1 7.4381 -7.4725 -5.7492 22 1 7.8531 -9.4619 -4.4267 23 1 5.7809 -8.2324 -4.1502 24 6 6.3914 1.1754 0.0030 25 6 5.6997 2.3714 0.0016 26 6 4.3179 2.3754 0.0008 27 17 3.4538 3.8810 -0.0003 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.9500 -0.8401 -0.0004 32 1 3.7807 -0.9773 0.0111 33 1 6.0600 -2.0059 0.4877 34 1 10.2067 -3.3188 -1.0857 35 1 9.7880 -1.9752 -1.9718 36 1 6.5610 -3.6153 -1.6348 37 1 7.7770 -3.0571 -2.8087 38 1 9.3324 -4.8286 -2.0399 39 1 8.1164 -5.3869 -0.8660 40 1 9.2790 -8.4841 -2.4837 41 1 7.4714 1.1785 0.0046 42 1 6.2407 3.3061 0.0020 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424090323.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:54:19 Heat of formation + Delta-G solvation = -50.974954 kcal Electronic energy + Delta-G solvation = -26117.121376 eV Core-core repulsion = 22122.877220 eV Total energy + Delta-G solvation = -3994.244155 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.96241 -39.99473 -38.40835 -36.63303 -35.69204 -34.92864 -34.75809 -32.96814 -31.81328 -30.06298 -29.87967 -27.26240 -26.65623 -24.34201 -24.08803 -22.43855 -21.38029 -20.57588 -20.03368 -18.75777 -17.79255 -16.92394 -16.61609 -16.27774 -16.20583 -15.59624 -15.32298 -15.17569 -14.78145 -14.55566 -14.38201 -14.25123 -13.79430 -13.77165 -13.35561 -13.20303 -12.88224 -12.73713 -12.62738 -12.28242 -12.13814 -11.89137 -11.73583 -11.36827 -11.21354 -11.01087 -10.79335 -10.33853 -10.11964 -10.10400 -9.78372 -9.55788 -9.45393 -9.36301 -9.30592 -8.52972 -8.39808 -8.33833 -6.17294 -4.21088 0.43758 0.78180 1.99687 2.41454 2.67347 2.78136 2.91133 3.22174 3.27821 3.29710 3.44602 4.26760 4.30696 4.31618 4.62765 4.83095 4.87052 4.92009 4.99271 5.12070 5.18889 5.18920 5.35110 5.36352 5.43718 5.50616 5.55115 5.81326 5.88791 6.02494 6.03934 6.11293 6.34879 6.53649 6.72090 7.10156 7.11287 7.36500 7.40641 7.50009 7.73109 7.79047 7.89107 8.04385 8.20676 8.84528 9.44466 10.93469 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013245 B = 0.002461 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.469174 B =11373.310465 C =13077.786510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.732 5.732 3 C 0.556 3.444 4 O -0.513 6.513 5 C -0.115 4.115 6 C -0.106 4.106 7 C 0.154 3.846 8 N -0.677 5.677 9 C 0.527 3.473 10 O -0.514 6.514 11 C 0.077 3.923 12 H 0.101 0.899 13 N -0.830 5.830 14 C -0.138 4.138 15 C 0.025 3.975 16 C -0.527 4.527 17 H 0.054 0.946 18 C 0.060 3.940 19 N -0.892 5.892 20 Si 0.893 3.107 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.276 1.276 24 C -0.084 4.084 25 C -0.100 4.100 26 C -0.004 4.004 27 Cl -0.037 7.037 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.401 0.599 32 H 0.138 0.862 33 H 0.416 0.584 34 H 0.358 0.642 35 H 0.347 0.653 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.018 0.982 39 H 0.019 0.981 40 H 0.263 0.737 41 H 0.156 0.844 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.211 15.259 8.471 20.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.385 5.385 3 C 0.342 3.658 4 O -0.389 6.389 5 C -0.119 4.119 6 C -0.127 4.127 7 C 0.059 3.941 8 N -0.323 5.323 9 C 0.316 3.684 10 O -0.387 6.387 11 C -0.038 4.038 12 H 0.119 0.881 13 N -0.363 5.363 14 C -0.178 4.178 15 C -0.012 4.012 16 C -0.565 4.565 17 H 0.072 0.928 18 C -0.142 4.142 19 N -0.531 5.531 20 Si 0.721 3.279 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.202 1.202 24 C -0.104 4.104 25 C -0.120 4.120 26 C -0.033 4.033 27 Cl -0.007 7.007 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.096 0.904 31 H 0.236 0.764 32 H 0.156 0.844 33 H 0.252 0.748 34 H 0.174 0.826 35 H 0.160 0.840 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.037 0.963 39 H 0.038 0.962 40 H 0.073 0.927 41 H 0.173 0.827 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -11.212 17.072 8.754 22.222 hybrid contribution -0.672 -2.156 -1.372 2.643 sum -11.885 14.916 7.382 20.450 Atomic orbital electron populations 1.21553 0.78957 1.02450 1.02494 1.45717 1.08015 1.08532 1.76277 1.18082 0.86741 0.84068 0.76888 1.90873 1.69542 1.30412 1.48059 1.19415 0.93289 0.92257 1.06951 1.20979 0.92534 0.97290 1.01935 1.17688 0.90316 0.86650 0.99458 1.43673 1.23504 1.12489 1.52636 1.21235 0.79436 0.91640 0.76134 1.90645 1.64378 1.38866 1.44853 1.21482 0.90134 0.90404 1.01775 0.88069 1.58759 1.08288 1.29274 1.39991 1.22413 1.00196 0.98734 0.96446 1.19097 0.95940 0.88581 0.97574 1.21118 1.20380 0.97023 1.18008 0.92752 1.25006 0.95014 0.97973 0.96223 1.69929 1.28455 1.15504 1.39214 0.86637 0.79579 0.79463 0.82235 1.20189 1.21167 1.20191 1.21552 1.02144 0.89912 0.96836 1.21005 0.91336 0.99331 1.00278 1.20961 0.92294 0.87501 1.02509 1.98405 1.76660 1.29430 1.96216 0.92040 0.92023 0.90440 0.76371 0.84439 0.74784 0.82637 0.83968 0.92430 0.92478 0.96335 0.96249 0.92728 0.82698 0.83883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.59 10.70 59.85 0.64 1.23 16 2 N -0.73 -5.88 5.66 -68.07 -0.39 -6.26 16 3 C 0.56 6.31 7.76 -12.36 -0.10 6.21 16 4 O -0.51 -7.31 13.96 5.31 0.07 -7.24 16 5 C -0.11 -1.25 5.87 -104.96 -0.62 -1.87 16 6 C -0.11 -0.98 9.45 -38.98 -0.37 -1.35 16 7 C 0.15 1.67 6.29 -83.72 -0.53 1.15 16 8 N -0.68 -7.18 5.34 -9.89 -0.05 -7.24 16 9 C 0.53 7.32 6.92 -10.99 -0.08 7.25 16 10 O -0.51 -8.47 13.68 5.55 0.08 -8.39 16 11 C 0.08 1.12 3.21 -68.86 -0.22 0.90 16 12 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 13 N -0.83 -12.57 8.94 -5.66 -0.05 -12.62 16 14 C -0.14 -2.41 4.78 -26.73 -0.13 -2.54 16 15 C 0.03 0.57 4.74 -27.88 -0.13 0.43 16 16 C -0.53 -13.73 9.11 -34.44 -0.31 -14.04 16 17 H 0.05 1.39 7.74 -52.48 -0.41 0.98 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.89 -25.04 13.29 55.43 0.74 -24.30 16 20 Si 0.89 20.51 29.54 -169.99 -5.02 15.48 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 24 C -0.08 -0.96 8.69 -39.32 -0.34 -1.31 16 25 C -0.10 -1.06 9.81 -39.63 -0.39 -1.45 16 26 C 0.00 -0.05 6.35 -39.06 -0.25 -0.29 16 27 Cl -0.04 -0.45 26.01 -51.86 -1.35 -1.79 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.40 2.22 6.86 -40.82 -0.28 1.94 16 32 H 0.14 0.85 6.40 -52.49 -0.34 0.51 16 33 H 0.42 3.24 8.82 -40.82 -0.36 2.88 16 34 H 0.36 5.51 7.55 -39.29 -0.30 5.21 16 35 H 0.35 5.36 8.58 -39.29 -0.34 5.02 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.02 0.44 6.87 -51.93 -0.36 0.08 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.16 1.94 6.21 -52.49 -0.33 1.61 16 42 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 LS Contribution 369.28 15.07 5.56 5.56 Total: -1.00 -32.50 369.28 -8.54 -41.04 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -5.22 Total: 9.93 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: -2.91 Total: -4.18 kcal Atomic # 7 Polarization: -50.67 SS G_CDS: 0.25 Total: -50.42 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: 0.15 Total: -15.63 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -1.35 Total: -1.79 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.50 -8.54 -41.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424090323.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.934 kcal (2) G-P(sol) polarization free energy of solvation -32.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds